Datasets:
| { | |
| "samples": 12157, | |
| "annotated": 12157, | |
| "flags": { | |
| "low_confidence_annotation": 3113, | |
| "feature_species_differs": 47, | |
| "normal_but_disease_text": 17 | |
| }, | |
| "changes_vs_v3": 236, | |
| "dropped_short_synonym_disease_terms": 347, | |
| "life_stage_source": { | |
| "luna": 8170, | |
| "age rule: age with unit": 1630, | |
| "age rule: bare number read as years": 1351, | |
| "age rule: postnatal day": 404, | |
| "rule: culture or organoid (culture time is not a life stage)": 239, | |
| "age rule: embryonic day": 154, | |
| "age rule: age in years": 113, | |
| "age rule: post-conception / gestational weeks": 64, | |
| "age rule: days in an age series": 28, | |
| "age rule: age range midpoint": 4 | |
| }, | |
| "life_stage_rule_vs_luna_disagree": 624, | |
| "organ": { | |
| "brain": 3391, | |
| "colon": 1000, | |
| "lung": 939, | |
| "liver": 776, | |
| "spinal cord": 639, | |
| "kidney": 590, | |
| "skin": 489, | |
| "pancreas": 488, | |
| "other": 398, | |
| "heart": 288, | |
| "breast": 267, | |
| "small intestine": 251, | |
| "unknown": 185, | |
| "blood vessel": 162, | |
| "stomach": 162, | |
| "lymph node": 160, | |
| "rectum": 154, | |
| "ovary": 150, | |
| "skeletal muscle": 138, | |
| "head and neck": 122, | |
| "plant": 120, | |
| "uterus": 117, | |
| "spleen": 108, | |
| "bone": 107, | |
| "prostate": 101, | |
| "placenta": 94, | |
| "embryo (whole)": 93, | |
| "eye": 89, | |
| "bone marrow": 89, | |
| "meninges": 70, | |
| "peripheral nerve": 67, | |
| "oral cavity": 60, | |
| "bladder": 55, | |
| "adrenal gland": 39, | |
| "thymus": 34, | |
| "peritoneum": 32, | |
| "adipose tissue": 32, | |
| "airway": 29, | |
| "thyroid": 29, | |
| "esophagus": 19, | |
| "tonsil": 12, | |
| "testis": 11, | |
| "cartilage": 1 | |
| }, | |
| "sample_kind": { | |
| "primary tissue": 8568, | |
| "tumour tissue": 2754, | |
| "metastasis": 352, | |
| "organoid": 212, | |
| "xenograft": 185, | |
| "whole embryo/organism": 57, | |
| "cell culture": 17, | |
| "engineered tissue": 10, | |
| "unknown": 2 | |
| }, | |
| "disease_status": { | |
| "disease": 7023, | |
| "normal": 3943, | |
| "perturbation": 1124, | |
| "not stated": 67 | |
| }, | |
| "life_stage": { | |
| "not stated": 7058, | |
| "adult": 2838, | |
| "aged": 1182, | |
| "juvenile": 330, | |
| "neonatal or infant": 324, | |
| "embryonic": 278, | |
| "fetal": 147 | |
| }, | |
| "sex": { | |
| "unknown": 7437, | |
| "male": 2687, | |
| "female": 2012, | |
| "mixed": 21 | |
| }, | |
| "preservation": { | |
| "null": 6951, | |
| "FFPE": 2839, | |
| "fresh frozen": 2327, | |
| "fixed frozen": 40 | |
| }, | |
| "with_tissue_term": 11599, | |
| "with_disease_term": 6479, | |
| "with_pubmed": 8473, | |
| "with_donor_key": 3391 | |
| } |