| taxid organism fasta_file proteins E NE role |
| 294 Pseudomonas fluorescens othersource_data_taxid294.fasta 5866 396 0 cross-validation |
| 883 Nitratidesulfovibrio vulgaris str. 'Miyazaki F' uniprotkb_data_taxid883.fasta 3188 303 0 cross-validation |
| 1140 Synechococcus elongatus PCC 7942 = FACHB-805 uniprotkb_data_taxid1140.fasta 2657 613 76 cross-validation |
| 3702 Arabidopsis thaliana uniprotkb_data_taxid3702.fasta 27386 464 104 cross-validation |
| 5823 Plasmodium berghei ANKA uniprotkb_data_taxid5823.fasta 4927 1192 905 cross-validation |
| 6239 Caenorhabditis elegans uniprotkb_data_taxid6239.fasta 19820 469 6734 cross-validation |
| 7227 Drosophila melanogaster uniprotkb_data_taxid7227.fasta 13807 391 7177 cross-validation |
| 7955 Danio rerio uniprotkb_data_taxid7955.fasta 26719 189 0 cross-validation |
| 10090 Mus musculus uniprotkb_data_taxid10090.fasta 21734 463 5900 cross-validation |
| 36329 Plasmodium falciparum 3D7 uniprotkb_data_taxid36329.fasta 5361 3230 1953 cross-validation |
| 62977 Acinetobacter baylyi ADP1 uniprotkb_data_taxid62977.fasta 3263 250 2508 cross-validation |
| 68895 Cupriavidus basilensis uniprotkb_data_taxid68895.fasta 7643 468 0 cross-validation |
| 71421 Haemophilus influenzae Rd KW20 uniprotkb_data_taxid71421.fasta 1704 520 1073 cross-validation |
| 83332 Mycobacterium tuberculosis H37Rv uniprotkb_data_taxid83332.fasta 3994 729 3179 cross-validation |
| 83333 Escherichia coli K-12 uniprotkb_data_taxid83333.fasta 4361 290 3969 held out (Fig. 5B) |
| 85962 Helicobacter pylori 26695 uniprotkb_data_taxid85962.fasta 1554 349 1096 cross-validation |
| 93061 Staphylococcus aureus subsp. aureus NCTC 8325 uniprotkb_data_taxid93061.fasta 2889 395 2484 cross-validation |
| 93064 Sphingomonas koreensis othersource_data_taxid93064.fasta 4118 443 0 cross-validation |
| 94122 Shewanella sp. ANA-3 uniprotkb_data_taxid94122.fasta 4341 305 0 cross-validation |
| 99287 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uniprotkb_data_taxid99287.fasta 4533 221 0 cross-validation |
| 171101 Streptococcus pneumoniae R6 uniprotkb_data_taxid171101.fasta 2031 133 0 cross-validation |
| 176299 Agrobacterium fabrum str. C58 uniprotkb_data_taxid176299.fasta 5344 360 4784 cross-validation |
| 185431 Trypanosoma brucei brucei TREU927 uniprotkb_data_taxid185431.fasta 8560 79 25 cross-validation |
| 187410 Yersinia pestis KIM10+ ncbi_data_taxid187410.fasta 3798 0 2726 cross-validation |
| 192222 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 uniprotkb_data_taxid192222.fasta 1623 261 1223 cross-validation |
| 199310 Escherichia coli CFT073 uniprotkb_data_taxid199310.fasta 5336 232 0 excluded |
| 205921 Streptococcus agalactiae A909 ncbi_data_taxid205921.fasta 1997 283 1564 cross-validation |
| 208963 Pseudomonas aeruginosa UCBPP-PA14 ncbi_data_taxid208963.fasta 5886 1684 4064 cross-validation |
| 208964 Pseudomonas aeruginosa PAO1 uniprotkb_data_taxid208964.fasta 5562 453 5106 cross-validation |
| 209261 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 ncbi_data_taxid209261.fasta 4237 2214 1889 cross-validation |
| 211586 Shewanella oneidensis MR-1 uniprotkb_data_taxid211586.fasta 4068 487 1836 cross-validation |
| 216591 Burkholderia cenocepacia J2315 uniprotkb_data_taxid216591.fasta 6993 160 3095 cross-validation |
| 216596 Rhizobium johnstonii 3841 uniprotkb_data_taxid216596.fasta 7091 0 4095 cross-validation |
| 216597 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 uniprotkb_data_taxid216597.fasta 4659 617 3052 cross-validation |
| 220341 Salmonella enterica subsp. enterica serovar Typhi str. CT18 othersource_data_taxid220341.fasta 4625 411 3581 cross-validation |
| 224308 Bacillus subtilis subsp. subtilis str. 168 uniprotkb_data_taxid224308.fasta 4260 362 3804 cross-validation |
| 225937 Marinobacter adhaerens HP15 uniprotkb_data_taxid225937.fasta 4407 550 0 cross-validation |
| 226186 Bacteroides thetaiotaomicron VPI-5482 uniprotkb_data_taxid226186.fasta 4782 325 0 cross-validation |
| 227321 Aspergillus nidulans FGSC A4 uniprotkb_data_taxid227321.fasta 10561 21 239 cross-validation |
| 243273 Mycoplasmoides genitalium G37 othersource_data_taxid243273.fasta 504 381 93 cross-validation |
| 258594 Rhodopseudomonas palustris CGA009 uniprotkb_data_taxid258594.fasta 4920 482 0 cross-validation |
| 266834 Sinorhizobium meliloti 1021 uniprotkb_data_taxid266834.fasta 6168 556 0 cross-validation |
| 267377 Methanococcus maripaludis S2 uniprotkb_data_taxid267377.fasta 1722 413 1055 cross-validation |
| 271848 Burkholderia thailandensis E264 ncbi_data_taxid271848.fasta 5607 396 0 cross-validation |
| 272560 Burkholderia pseudomallei K96243 uniprotkb_data_taxid272560.fasta 5717 500 0 cross-validation |
| 272634 Mycoplasmoides pneumoniae M129 uniprotkb_data_taxid272634.fasta 686 342 259 cross-validation |
| 272635 Mycoplasmopsis pulmonis UAB CTIP uniprotkb_data_taxid272635.fasta 778 463 315 cross-validation |
| 284812 Schizosaccharomyces pombe 972h- uniprotkb_data_taxid284812.fasta 5158 1359 3176 cross-validation |
| 290336 Klebsiella michiganensis M5al othersource_data_taxid290336.fasta 5306 378 0 cross-validation |
| 293653 Streptococcus pyogenes MGAS5005 ncbi_data_taxid293653.fasta 1697 171 686 cross-validation |
| 321846 Pseudomonas simiae othersource_data_taxid321846.fasta 5506 473 0 cross-validation |
| 323850 Shewanella loihica PV-4 uniprotkb_data_taxid323850.fasta 3855 286 0 cross-validation |
| 326297 Shewanella amazonensis SB2B uniprotkb_data_taxid326297.fasta 3638 390 0 cross-validation |
| 330879 Aspergillus fumigatus Af293 uniprotkb_data_taxid330879.fasta 9647 3 72 cross-validation |
| 354242 Campylobacter jejuni subsp. jejuni 81-176 ncbi_data_taxid354242.fasta 1643 199 0 cross-validation |
| 373153 Streptococcus pneumoniae D39 uniprotkb_data_taxid373153.fasta 1915 110 167 cross-validation |
| 388919 Streptococcus sanguinis SK36 uniprotkb_data_taxid388919.fasta 2269 218 2047 cross-validation |
| 392499 Rhizorhabdus wittichii RW1 uniprotkb_data_taxid392499.fasta 5313 547 0 cross-validation |
| 398527 Paraburkholderia phytofirmans PsJN uniprotkb_data_taxid398527.fasta 7197 405 0 cross-validation |
| 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 uniprotkb_data_taxid398580.fasta 4086 528 0 cross-validation |
| 400667 Acinetobacter baumannii ATCC 17978 othersource_data_taxid400667.fasta 3799 604 2646 cross-validation |
| 401614 Francisella tularensis subsp. novicida U112 ncbi_data_taxid401614.fasta 1761 506 1204 cross-validation |
| 425011 Aspergillus niger CBS 513.88 uniprotkb_data_taxid425011.fasta 14069 7 77 cross-validation |
| 431947 Porphyromonas gingivalis ATCC 33277 ncbi_data_taxid431947.fasta 1884 454 0 cross-validation |
| 471876 Streptococcus pyogenes NZ131 uniprotkb_data_taxid471876.fasta 1700 239 1171 cross-validation |
| 507601 Toxoplasma gondii GT1 uniprotkb_data_taxid507601.fasta 8450 2874 5276 cross-validation |
| 510516 Aspergillus oryzae RIB40 uniprotkb_data_taxid510516.fasta 12056 3 55 cross-validation |
| 528354 Neisseria gonorrhoeae MS11 ncbi_data_taxid528354.fasta 1990 671 1053 cross-validation |
| 535206 Enterococcus faecium E1162 ncbi_data_taxid535206.fasta 2545 11 0 cross-validation |
| 565050 Caulobacter vibrioides NA1000 uniprotkb_data_taxid565050.fasta 3859 544 3078 cross-validation |
| 580240 Saccharomyces cerevisiae S288C othersource_data_taxid580240.fasta 5975 939 4353 held out (Fig. 5B) |
| 588858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uniprotkb_data_taxid588858.fasta 5369 113 0 cross-validation |
| 633149 Brevundimonas subvibrioides ATCC 15264 uniprotkb_data_taxid633149.fasta 3326 414 2794 cross-validation |
| 640081 Azospira oryzae PS uniprotkb_data_taxid640081.fasta 3432 485 0 cross-validation |
| 644801 Stutzerimonas stutzeri RCH2 uniprotkb_data_taxid644801.fasta 4234 427 0 cross-validation |
| 679895 Escherichia coli BW25113 othersource_data_taxid679895.fasta 4192 313 0 excluded |
| 709015 Pontibacter actiniarum DSM 19842 othersource_data_taxid709015.fasta 4220 472 0 cross-validation |
| 714359 Bacillus thuringiensis BMB171 ncbi_data_taxid714359.fasta 5391 510 0 cross-validation |
| 757424 Herbaspirillum seropedicae SmR1 uniprotkb_data_taxid757424.fasta 4732 466 0 cross-validation |
| 862962 Bacteroides fragilis 638R uniprotkb_data_taxid862962.fasta 4284 544 0 cross-validation |
| 926556 Echinicola vietnamensis DSM 17526 uniprotkb_data_taxid926556.fasta 4509 491 0 cross-validation |
| 941322 Escherichia coli O25b:H4-ST131 ncbi_data_taxid941322.fasta 4821 294 4023 excluded |
| 1064539 Azospirillum baldaniorum ncbi_data_taxid1064539.fasta 6720 142 0 cross-validation |
| 1122134 Kangiella aquimarina DSM 16071 othersource_data_taxid1122134.fasta 2467 399 0 cross-validation |
| 1124478 Vibrio cholerae O1 str. C6706 ncbi_data_taxid1124478.fasta 3532 0 0 excluded |
| 1380365 Dyella japonica UNC79MFTsu3.2 othersource_data_taxid1380365.fasta 4374 0 0 excluded |
| 1423144 Phaeobacter gallaeciensis DSM 26640 ncbi_data_taxid1423144.fasta 4286 267 0 cross-validation |
| 1813946 Acidovorax sp. GW101-3H11 uniprotkb_data_taxid1813946.fasta 4741 499 0 cross-validation |
| 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 uniprotkb_data_taxid1986952.fasta 4946 477 0 cross-validation |
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