Delete data/community_contributions/hf_portal_category_modality_smoke_20260728_v3

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/README.md

@@ -1,28 +0,0 @@
-# HF Portal Central Storage Smoke Test
-
-Embedding ID: `hf_portal_category_modality_smoke_20260728_v3`
-
-This package contains deterministic synthetic vectors created solely
-to verify the direct Hugging Face Pull Request submission pipeline.
-
-It contains 1,500 human Ensembl gene IDs and eight-dimensional
-float32 vectors. It makes no biological or scientific claims.
-
-The submitted modality is `Spatial Omics`, which is intentionally
-outside the official catalog taxonomy. The expected displayed
-category is therefore `Other`.
-
-After the portal implementation is approved, this synthetic package
-can be removed from the staging library.
-
-
-## Portal smoke-test purpose
-
-This synthetic package tests the complete Hugging Face contribution
-workflow after introducing distinct catalog `category` and `modality`
-fields.
-
-- Category: `Protein`
-- Modality: `Synthetic protein-sequence embedding test`
-- Intended environment: staging only
-- Biological interpretation: none; deterministic technical test only

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/embeddings.npz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:6e64076f1885b497fe0c40b52a3176a3fb037ddd5f56ef971d6a44c2fd4cf711
-size 44678

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/genes.tsv

@@ -1,1501 +0,0 @@
-ensembl_gene_id
-ENSG00000000003
-ENSG00000000005
-ENSG00000000419
-ENSG00000000457
-ENSG00000000460
-ENSG00000000938
-ENSG00000000971
-ENSG00000001036
-ENSG00000001084
-ENSG00000001167
-ENSG00000001460
-ENSG00000001461
-ENSG00000001497
-ENSG00000001561
-ENSG00000001617
-ENSG00000001626
-ENSG00000001629
-ENSG00000001630
-ENSG00000001631
-ENSG00000002016
-ENSG00000002330
-ENSG00000002549
-ENSG00000002586
-ENSG00000002587
-ENSG00000002726
-ENSG00000002745
-ENSG00000002746
-ENSG00000002822
-ENSG00000002834
-ENSG00000002919
-ENSG00000002933
-ENSG00000003056
-ENSG00000003096
-ENSG00000003137
-ENSG00000003147
-ENSG00000003249
-ENSG00000003393
-ENSG00000003400
-ENSG00000003402
-ENSG00000003436
-ENSG00000003509
-ENSG00000003756
-ENSG00000003987
-ENSG00000003989
-ENSG00000004059
-ENSG00000004139
-ENSG00000004142
-ENSG00000004399
-ENSG00000004455
-ENSG00000004468
-ENSG00000004478
-ENSG00000004487
-ENSG00000004534
-ENSG00000004660
-ENSG00000004700
-ENSG00000004766
-ENSG00000004776
-ENSG00000004777
-ENSG00000004779
-ENSG00000004799
-ENSG00000004809
-ENSG00000004838
-ENSG00000004846
-ENSG00000004848
-ENSG00000004864
-ENSG00000004866
-ENSG00000004897
-ENSG00000004939
-ENSG00000004948
-ENSG00000004961
-ENSG00000004975
-ENSG00000005001
-ENSG00000005007
-ENSG00000005020
-ENSG00000005022
-ENSG00000005059
-ENSG00000005073
-ENSG00000005075
-ENSG00000005100
-ENSG00000005102
-ENSG00000005108
-ENSG00000005156
-ENSG00000005175
-ENSG00000005187
-ENSG00000005189
-ENSG00000005194
-ENSG00000005206
-ENSG00000005238
-ENSG00000005243
-ENSG00000005249
-ENSG00000005302
-ENSG00000005339
-ENSG00000005379
-ENSG00000005381
-ENSG00000005421
-ENSG00000005436
-ENSG00000005448
-ENSG00000005469
-ENSG00000005471
-ENSG00000005483
-ENSG00000005486
-ENSG00000005513
-ENSG00000005700
-ENSG00000005801
-ENSG00000005810
-ENSG00000005812
-ENSG00000005844
-ENSG00000005882
-ENSG00000005884
-ENSG00000005889
-ENSG00000005893
-ENSG00000005961
-ENSG00000005981
-ENSG00000006007
-ENSG00000006015
-ENSG00000006016
-ENSG00000006025
-ENSG00000006042
-ENSG00000006047
-ENSG00000006059
-ENSG00000006062
-ENSG00000006071
-ENSG00000006116
-ENSG00000006118
-ENSG00000006125
-ENSG00000006128
-ENSG00000006194
-ENSG00000006210
-ENSG00000006282
-ENSG00000006283
-ENSG00000006327
-ENSG00000006377
-ENSG00000006432
-ENSG00000006451
-ENSG00000006453
-ENSG00000006459
-ENSG00000006468
-ENSG00000006530
-ENSG00000006534
-ENSG00000006555
-ENSG00000006576
-ENSG00000006606
-ENSG00000006607
-ENSG00000006611
-ENSG00000006625
-ENSG00000006634
-ENSG00000006638
-ENSG00000006652
-ENSG00000006659
-ENSG00000006695
-ENSG00000006704
-ENSG00000006712
-ENSG00000006715
-ENSG00000006740
-ENSG00000006744
-ENSG00000006747
-ENSG00000006756
-ENSG00000006757
-ENSG00000006788
-ENSG00000006831
-ENSG00000006837
-ENSG00000007001
-ENSG00000007038
-ENSG00000007047
-ENSG00000007062
-ENSG00000007080
-ENSG00000007129
-ENSG00000007168
-ENSG00000007171
-ENSG00000007174
-ENSG00000007202
-ENSG00000007216
-ENSG00000007237
-ENSG00000007255
-ENSG00000007264
-ENSG00000007306
-ENSG00000007312
-ENSG00000007314
-ENSG00000007341
-ENSG00000007350
-ENSG00000007372
-ENSG00000007376
-ENSG00000007384
-ENSG00000007392
-ENSG00000007402
-ENSG00000007516
-ENSG00000007520
-ENSG00000007541
-ENSG00000007545
-ENSG00000007866
-ENSG00000007908
-ENSG00000007923
-ENSG00000007933
-ENSG00000007944
-ENSG00000007952
-ENSG00000007968
-ENSG00000008018
-ENSG00000008056
-ENSG00000008083
-ENSG00000008086
-ENSG00000008118
-ENSG00000008128
-ENSG00000008130
-ENSG00000008196
-ENSG00000008197
-ENSG00000008226
-ENSG00000008256
-ENSG00000008277
-ENSG00000008282
-ENSG00000008283
-ENSG00000008294
-ENSG00000008300
-ENSG00000008311
-ENSG00000008323
-ENSG00000008324
-ENSG00000008382
-ENSG00000008394
-ENSG00000008405
-ENSG00000008438
-ENSG00000008441
-ENSG00000008513
-ENSG00000008516
-ENSG00000008517
-ENSG00000008710
-ENSG00000008735
-ENSG00000008838
-ENSG00000008853
-ENSG00000008869
-ENSG00000008952
-ENSG00000008988
-ENSG00000009307
-ENSG00000009335
-ENSG00000009413
-ENSG00000009694
-ENSG00000009709
-ENSG00000009724
-ENSG00000009765
-ENSG00000009780
-ENSG00000009790
-ENSG00000009830
-ENSG00000009844
-ENSG00000009950
-ENSG00000009954
-ENSG00000010017
-ENSG00000010030
-ENSG00000010072
-ENSG00000010165
-ENSG00000010219
-ENSG00000010244
-ENSG00000010256
-ENSG00000010270
-ENSG00000010278
-ENSG00000010282
-ENSG00000010292
-ENSG00000010295
-ENSG00000010310
-ENSG00000010318
-ENSG00000010319
-ENSG00000010322
-ENSG00000010327
-ENSG00000010361
-ENSG00000010379
-ENSG00000010404
-ENSG00000010438
-ENSG00000010539
-ENSG00000010610
-ENSG00000010626
-ENSG00000010671
-ENSG00000010704
-ENSG00000010803
-ENSG00000010810
-ENSG00000010818
-ENSG00000010932
-ENSG00000011007
-ENSG00000011009
-ENSG00000011021
-ENSG00000011028
-ENSG00000011052
-ENSG00000011083
-ENSG00000011105
-ENSG00000011114
-ENSG00000011132
-ENSG00000011143
-ENSG00000011198
-ENSG00000011201
-ENSG00000011243
-ENSG00000011258
-ENSG00000011260
-ENSG00000011275
-ENSG00000011295
-ENSG00000011304
-ENSG00000011332
-ENSG00000011347
-ENSG00000011376
-ENSG00000011405
-ENSG00000011422
-ENSG00000011426
-ENSG00000011451
-ENSG00000011454
-ENSG00000011465
-ENSG00000011478
-ENSG00000011485
-ENSG00000011523
-ENSG00000011566
-ENSG00000011590
-ENSG00000011600
-ENSG00000011638
-ENSG00000011677
-ENSG00000012048
-ENSG00000012061
-ENSG00000012124
-ENSG00000012171
-ENSG00000012174
-ENSG00000012211
-ENSG00000012223
-ENSG00000012232
-ENSG00000012504
-ENSG00000012660
-ENSG00000012779
-ENSG00000012817
-ENSG00000012822
-ENSG00000012963
-ENSG00000012983
-ENSG00000013016
-ENSG00000013275
-ENSG00000013288
-ENSG00000013293
-ENSG00000013297
-ENSG00000013306
-ENSG00000013364
-ENSG00000013374
-ENSG00000013375
-ENSG00000013392
-ENSG00000013441
-ENSG00000013503
-ENSG00000013523
-ENSG00000013561
-ENSG00000013563
-ENSG00000013573
-ENSG00000013583
-ENSG00000013588
-ENSG00000013619
-ENSG00000013725
-ENSG00000013810
-ENSG00000014123
-ENSG00000014138
-ENSG00000014164
-ENSG00000014216
-ENSG00000014257
-ENSG00000014641
-ENSG00000014824
-ENSG00000014914
-ENSG00000014919
-ENSG00000015133
-ENSG00000015153
-ENSG00000015171
-ENSG00000015285
-ENSG00000015413
-ENSG00000015475
-ENSG00000015479
-ENSG00000015520
-ENSG00000015532
-ENSG00000015568
-ENSG00000015592
-ENSG00000015676
-ENSG00000016082
-ENSG00000016391
-ENSG00000016402
-ENSG00000016490
-ENSG00000016602
-ENSG00000016864
-ENSG00000017260
-ENSG00000017427
-ENSG00000017483
-ENSG00000017797
-ENSG00000018189
-ENSG00000018236
-ENSG00000018280
-ENSG00000018408
-ENSG00000018510
-ENSG00000018610
-ENSG00000018625
-ENSG00000018699
-ENSG00000018869
-ENSG00000019102
-ENSG00000019144
-ENSG00000019169
-ENSG00000019186
-ENSG00000019485
-ENSG00000019505
-ENSG00000019549
-ENSG00000019582
-ENSG00000019991
-ENSG00000019995
-ENSG00000020129
-ENSG00000020181
-ENSG00000020256
-ENSG00000020426
-ENSG00000020577
-ENSG00000020633
-ENSG00000020922
-ENSG00000021300
-ENSG00000021355
-ENSG00000021461
-ENSG00000021488
-ENSG00000021574
-ENSG00000021645
-ENSG00000021762
-ENSG00000021776
-ENSG00000021826
-ENSG00000021852
-ENSG00000022267
-ENSG00000022277
-ENSG00000022355
-ENSG00000022556
-ENSG00000022567
-ENSG00000022840
-ENSG00000022976
-ENSG00000023041
-ENSG00000023171
-ENSG00000023191
-ENSG00000023228
-ENSG00000023287
-ENSG00000023318
-ENSG00000023330
-ENSG00000023445
-ENSG00000023516
-ENSG00000023572
-ENSG00000023608
-ENSG00000023697
-ENSG00000023734
-ENSG00000023839
-ENSG00000023892
-ENSG00000023902
-ENSG00000023909
-ENSG00000024048
-ENSG00000024422
-ENSG00000024526
-ENSG00000024862
-ENSG00000025039
-ENSG00000025156
-ENSG00000025293
-ENSG00000025423
-ENSG00000025434
-ENSG00000025708
-ENSG00000025770
-ENSG00000025772
-ENSG00000025796
-ENSG00000025800
-ENSG00000026025
-ENSG00000026036
-ENSG00000026103
-ENSG00000026297
-ENSG00000026508
-ENSG00000026559
-ENSG00000026652
-ENSG00000026751
-ENSG00000026950
-ENSG00000027001
-ENSG00000027075
-ENSG00000027644
-ENSG00000027697
-ENSG00000027847
-ENSG00000027869
-ENSG00000028116
-ENSG00000028137
-ENSG00000028203
-ENSG00000028277
-ENSG00000028310
-ENSG00000028528
-ENSG00000028839
-ENSG00000029153
-ENSG00000029363
-ENSG00000029364
-ENSG00000029534
-ENSG00000029559
-ENSG00000029639
-ENSG00000029725
-ENSG00000029993
-ENSG00000030066
-ENSG00000030110
-ENSG00000030304
-ENSG00000030419
-ENSG00000030582
-ENSG00000031003
-ENSG00000031081
-ENSG00000031691
-ENSG00000031698
-ENSG00000031823
-ENSG00000032219
-ENSG00000032389
-ENSG00000032444
-ENSG00000032742
-ENSG00000033011
-ENSG00000033030
-ENSG00000033050
-ENSG00000033100
-ENSG00000033122
-ENSG00000033170
-ENSG00000033178
-ENSG00000033327
-ENSG00000033627
-ENSG00000033800
-ENSG00000033867
-ENSG00000034053
-ENSG00000034152
-ENSG00000034239
-ENSG00000034510
-ENSG00000034533
-ENSG00000034677
-ENSG00000034693
-ENSG00000034713
-ENSG00000034971
-ENSG00000035115
-ENSG00000035141
-ENSG00000035403
-ENSG00000035499
-ENSG00000035664
-ENSG00000035681
-ENSG00000035687
-ENSG00000035720
-ENSG00000035862
-ENSG00000035928
-ENSG00000036054
-ENSG00000036257
-ENSG00000036448
-ENSG00000036473
-ENSG00000036530
-ENSG00000036549
-ENSG00000036565
-ENSG00000036672
-ENSG00000036828
-ENSG00000037042
-ENSG00000037241
-ENSG00000037280
-ENSG00000037474
-ENSG00000037637
-ENSG00000037749
-ENSG00000037757
-ENSG00000037897
-ENSG00000037965
-ENSG00000038002
-ENSG00000038210
-ENSG00000038219
-ENSG00000038274
-ENSG00000038295
-ENSG00000038358
-ENSG00000038382
-ENSG00000038427
-ENSG00000038532
-ENSG00000038945
-ENSG00000039068
-ENSG00000039123
-ENSG00000039139
-ENSG00000039319
-ENSG00000039523
-ENSG00000039537
-ENSG00000039560
-ENSG00000039600
-ENSG00000039650
-ENSG00000039987
-ENSG00000040199
-ENSG00000040275
-ENSG00000040341
-ENSG00000040487
-ENSG00000040531
-ENSG00000040608
-ENSG00000040633
-ENSG00000040731
-ENSG00000040933
-ENSG00000041353
-ENSG00000041357
-ENSG00000041515
-ENSG00000041802
-ENSG00000041880
-ENSG00000041982
-ENSG00000041988
-ENSG00000042062
-ENSG00000042088
-ENSG00000042286
-ENSG00000042317
-ENSG00000042429
-ENSG00000042445
-ENSG00000042493
-ENSG00000042753
-ENSG00000042781
-ENSG00000042813
-ENSG00000042832
-ENSG00000042980
-ENSG00000043039
-ENSG00000043093
-ENSG00000043143
-ENSG00000043355
-ENSG00000043462
-ENSG00000043514
-ENSG00000043591
-ENSG00000044012
-ENSG00000044090
-ENSG00000044115
-ENSG00000044446
-ENSG00000044459
-ENSG00000044524
-ENSG00000044574
-ENSG00000046604
-ENSG00000046647
-ENSG00000046651
-ENSG00000046653
-ENSG00000046774
-ENSG00000046889
-ENSG00000047056
-ENSG00000047188
-ENSG00000047230
-ENSG00000047249
-ENSG00000047315
-ENSG00000047346
-ENSG00000047365
-ENSG00000047410
-ENSG00000047457
-ENSG00000047578
-ENSG00000047579
-ENSG00000047597
-ENSG00000047617
-ENSG00000047621
-ENSG00000047634
-ENSG00000047644
-ENSG00000047648
-ENSG00000047662
-ENSG00000047849
-ENSG00000047932
-ENSG00000047936
-ENSG00000048028
-ENSG00000048052
-ENSG00000048140
-ENSG00000048162
-ENSG00000048342
-ENSG00000048392
-ENSG00000048405
-ENSG00000048462
-ENSG00000048471
-ENSG00000048540
-ENSG00000048544
-ENSG00000048545
-ENSG00000048649
-ENSG00000048707
-ENSG00000048740
-ENSG00000048828
-ENSG00000048991
-ENSG00000049089
-ENSG00000049130
-ENSG00000049167
-ENSG00000049192
-ENSG00000049239
-ENSG00000049245
-ENSG00000049246
-ENSG00000049247
-ENSG00000049249
-ENSG00000049283
-ENSG00000049323
-ENSG00000049449
-ENSG00000049540
-ENSG00000049541
-ENSG00000049618
-ENSG00000049656
-ENSG00000049759
-ENSG00000049768
-ENSG00000049769
-ENSG00000049860
-ENSG00000049883
-ENSG00000050030
-ENSG00000050130
-ENSG00000050165
-ENSG00000050327
-ENSG00000050344
-ENSG00000050393
-ENSG00000050405
-ENSG00000050426
-ENSG00000050438
-ENSG00000050555
-ENSG00000050628
-ENSG00000050730
-ENSG00000050748
-ENSG00000050767
-ENSG00000050820
-ENSG00000051009
-ENSG00000051108
-ENSG00000051128
-ENSG00000051180
-ENSG00000051341
-ENSG00000051382
-ENSG00000051523
-ENSG00000051596
-ENSG00000051620
-ENSG00000051825
-ENSG00000052126
-ENSG00000052344
-ENSG00000052723
-ENSG00000052749
-ENSG00000052795
-ENSG00000052802
-ENSG00000052841
-ENSG00000052850
-ENSG00000053108
-ENSG00000053254
-ENSG00000053328
-ENSG00000053371
-ENSG00000053372
-ENSG00000053438
-ENSG00000053501
-ENSG00000053524
-ENSG00000053702
-ENSG00000053747
-ENSG00000053770
-ENSG00000053900
-ENSG00000053918
-ENSG00000054116
-ENSG00000054118
-ENSG00000054148
-ENSG00000054179
-ENSG00000054219
-ENSG00000054267
-ENSG00000054277
-ENSG00000054282
-ENSG00000054356
-ENSG00000054392
-ENSG00000054523
-ENSG00000054598
-ENSG00000054611
-ENSG00000054654
-ENSG00000054690
-ENSG00000054793
-ENSG00000054796
-ENSG00000054803
-ENSG00000054938
-ENSG00000054965
-ENSG00000054967
-ENSG00000054983
-ENSG00000055044
-ENSG00000055070
-ENSG00000055118
-ENSG00000055130
-ENSG00000055147
-ENSG00000055163
-ENSG00000055208
-ENSG00000055211
-ENSG00000055332
-ENSG00000055483
-ENSG00000055609
-ENSG00000055732
-ENSG00000055813
-ENSG00000055917
-ENSG00000055950
-ENSG00000055955
-ENSG00000055957
-ENSG00000056050
-ENSG00000056097
-ENSG00000056277
-ENSG00000056291
-ENSG00000056487
-ENSG00000056558
-ENSG00000056586
-ENSG00000056736
-ENSG00000056972
-ENSG00000056998
-ENSG00000057019
-ENSG00000057149
-ENSG00000057252
-ENSG00000057294
-ENSG00000057468
-ENSG00000057593
-ENSG00000057608
-ENSG00000057657
-ENSG00000057663
-ENSG00000057704
-ENSG00000057757
-ENSG00000057935
-ENSG00000058056
-ENSG00000058063
-ENSG00000058085
-ENSG00000058091
-ENSG00000058262
-ENSG00000058272
-ENSG00000058335
-ENSG00000058404
-ENSG00000058453
-ENSG00000058600
-ENSG00000058668
-ENSG00000058673
-ENSG00000058729
-ENSG00000058799
-ENSG00000058804
-ENSG00000058866
-ENSG00000059122
-ENSG00000059145
-ENSG00000059377
-ENSG00000059378
-ENSG00000059573
-ENSG00000059588
-ENSG00000059691
-ENSG00000059728
-ENSG00000059758
-ENSG00000059769
-ENSG00000059804
-ENSG00000059915
-ENSG00000060069
-ENSG00000060138
-ENSG00000060140
-ENSG00000060237
-ENSG00000060339
-ENSG00000060491
-ENSG00000060558
-ENSG00000060566
-ENSG00000060642
-ENSG00000060656
-ENSG00000060688
-ENSG00000060709
-ENSG00000060718
-ENSG00000060749
-ENSG00000060762
-ENSG00000060971
-ENSG00000060982
-ENSG00000061273
-ENSG00000061337
-ENSG00000061455
-ENSG00000061492
-ENSG00000061656
-ENSG00000061676
-ENSG00000061794
-ENSG00000061918
-ENSG00000061936
-ENSG00000061938
-ENSG00000061987
-ENSG00000062038
-ENSG00000062096
-ENSG00000062194
-ENSG00000062282
-ENSG00000062370
-ENSG00000062485
-ENSG00000062524
-ENSG00000062582
-ENSG00000062598
-ENSG00000062650
-ENSG00000062716
-ENSG00000062725
-ENSG00000062822
-ENSG00000063015
-ENSG00000063046
-ENSG00000063127
-ENSG00000063169
-ENSG00000063176
-ENSG00000063177
-ENSG00000063180
-ENSG00000063241
-ENSG00000063244
-ENSG00000063245
-ENSG00000063322
-ENSG00000063438
-ENSG00000063515
-ENSG00000063587
-ENSG00000063601
-ENSG00000063660
-ENSG00000063761
-ENSG00000063854
-ENSG00000063978
-ENSG00000064012
-ENSG00000064042
-ENSG00000064102
-ENSG00000064115
-ENSG00000064195
-ENSG00000064199
-ENSG00000064201
-ENSG00000064205
-ENSG00000064218
-ENSG00000064225
-ENSG00000064270
-ENSG00000064300
-ENSG00000064309
-ENSG00000064313
-ENSG00000064393
-ENSG00000064419
-ENSG00000064489
-ENSG00000064490
-ENSG00000064545
-ENSG00000064547
-ENSG00000064601
-ENSG00000064607
-ENSG00000064651
-ENSG00000064652
-ENSG00000064655
-ENSG00000064666
-ENSG00000064687
-ENSG00000064692
-ENSG00000064703
-ENSG00000064726
-ENSG00000064763
-ENSG00000064787
-ENSG00000064835
-ENSG00000064886
-ENSG00000064932
-ENSG00000064933
-ENSG00000064961
-ENSG00000064989
-ENSG00000064995
-ENSG00000064999
-ENSG00000065000
-ENSG00000065029
-ENSG00000065054
-ENSG00000065057
-ENSG00000065060
-ENSG00000065135
-ENSG00000065150
-ENSG00000065154
-ENSG00000065183
-ENSG00000065243
-ENSG00000065268
-ENSG00000065308
-ENSG00000065320
-ENSG00000065325
-ENSG00000065328
-ENSG00000065357
-ENSG00000065361
-ENSG00000065371
-ENSG00000065413
-ENSG00000065427
-ENSG00000065457
-ENSG00000065485
-ENSG00000065491
-ENSG00000065518
-ENSG00000065526
-ENSG00000065534
-ENSG00000065548
-ENSG00000065559
-ENSG00000065600
-ENSG00000065609
-ENSG00000065613
-ENSG00000065615
-ENSG00000065618
-ENSG00000065621
-ENSG00000065665
-ENSG00000065675
-ENSG00000065717
-ENSG00000065802
-ENSG00000065809
-ENSG00000065833
-ENSG00000065882
-ENSG00000065883
-ENSG00000065911
-ENSG00000065923
-ENSG00000065970
-ENSG00000065978
-ENSG00000065989
-ENSG00000066027
-ENSG00000066032
-ENSG00000066044
-ENSG00000066056
-ENSG00000066084
-ENSG00000066117
-ENSG00000066135
-ENSG00000066136
-ENSG00000066185
-ENSG00000066230
-ENSG00000066248
-ENSG00000066279
-ENSG00000066294
-ENSG00000066322
-ENSG00000066336
-ENSG00000066379
-ENSG00000066382
-ENSG00000066405
-ENSG00000066422
-ENSG00000066427
-ENSG00000066455
-ENSG00000066468
-ENSG00000066557
-ENSG00000066583
-ENSG00000066629
-ENSG00000066651
-ENSG00000066654
-ENSG00000066697
-ENSG00000066735
-ENSG00000066739
-ENSG00000066777
-ENSG00000066813
-ENSG00000066827
-ENSG00000066855
-ENSG00000066923
-ENSG00000066926
-ENSG00000066933
-ENSG00000067048
-ENSG00000067057
-ENSG00000067064
-ENSG00000067066
-ENSG00000067082
-ENSG00000067113
-ENSG00000067141
-ENSG00000067167
-ENSG00000067177
-ENSG00000067182
-ENSG00000067191
-ENSG00000067208
-ENSG00000067221
-ENSG00000067225
-ENSG00000067248
-ENSG00000067334
-ENSG00000067365
-ENSG00000067369
-ENSG00000067445
-ENSG00000067533
-ENSG00000067560
-ENSG00000067596
-ENSG00000067606
-ENSG00000067646
-ENSG00000067704
-ENSG00000067715
-ENSG00000067798
-ENSG00000067829
-ENSG00000067836
-ENSG00000067840
-ENSG00000067842
-ENSG00000067900
-ENSG00000067955
-ENSG00000067992
-ENSG00000068001
-ENSG00000068024
-ENSG00000068028
-ENSG00000068078
-ENSG00000068079
-ENSG00000068097
-ENSG00000068120
-ENSG00000068137
-ENSG00000068305
-ENSG00000068308
-ENSG00000068323
-ENSG00000068354
-ENSG00000068366
-ENSG00000068383
-ENSG00000068394
-ENSG00000068400
-ENSG00000068438
-ENSG00000068489
-ENSG00000068615
-ENSG00000068650
-ENSG00000068654
-ENSG00000068697
-ENSG00000068724
-ENSG00000068745
-ENSG00000068781
-ENSG00000068784
-ENSG00000068796
-ENSG00000068831
-ENSG00000068878
-ENSG00000068885
-ENSG00000068903
-ENSG00000068912
-ENSG00000068971
-ENSG00000068976
-ENSG00000068985
-ENSG00000069011
-ENSG00000069018
-ENSG00000069020
-ENSG00000069122
-ENSG00000069188
-ENSG00000069206
-ENSG00000069248
-ENSG00000069275
-ENSG00000069329
-ENSG00000069345
-ENSG00000069399
-ENSG00000069424
-ENSG00000069431
-ENSG00000069482
-ENSG00000069493
-ENSG00000069509
-ENSG00000069535
-ENSG00000069667
-ENSG00000069696
-ENSG00000069702
-ENSG00000069764
-ENSG00000069812
-ENSG00000069849
-ENSG00000069869
-ENSG00000069943
-ENSG00000069956
-ENSG00000069966
-ENSG00000069974
-ENSG00000069998
-ENSG00000070010
-ENSG00000070018
-ENSG00000070019
-ENSG00000070031
-ENSG00000070047
-ENSG00000070061
-ENSG00000070081
-ENSG00000070087
-ENSG00000070159
-ENSG00000070182
-ENSG00000070190
-ENSG00000070193
-ENSG00000070214
-ENSG00000070269
-ENSG00000070366
-ENSG00000070367
-ENSG00000070371
-ENSG00000070388
-ENSG00000070404
-ENSG00000070413
-ENSG00000070423
-ENSG00000070444
-ENSG00000070476
-ENSG00000070495
-ENSG00000070501
-ENSG00000070526
-ENSG00000070540
-ENSG00000070601
-ENSG00000070610
-ENSG00000070614
-ENSG00000070669
-ENSG00000070718
-ENSG00000070729
-ENSG00000070731
-ENSG00000070748
-ENSG00000070756
-ENSG00000070759
-ENSG00000070761
-ENSG00000070770
-ENSG00000070778
-ENSG00000070785
-ENSG00000070808
-ENSG00000070814
-ENSG00000070831
-ENSG00000070882
-ENSG00000070886
-ENSG00000070915
-ENSG00000070950
-ENSG00000070961
-ENSG00000070985
-ENSG00000071051
-ENSG00000071054
-ENSG00000071073
-ENSG00000071082
-ENSG00000071127
-ENSG00000071189
-ENSG00000071203
-ENSG00000071205
-ENSG00000071242
-ENSG00000071243
-ENSG00000071246
-ENSG00000071282
-ENSG00000071462
-ENSG00000071537
-ENSG00000071539
-ENSG00000071553
-ENSG00000071564
-ENSG00000071575
-ENSG00000071626
-ENSG00000071655
-ENSG00000071677
-ENSG00000071794
-ENSG00000071859
-ENSG00000071889
-ENSG00000071894
-ENSG00000071909
-ENSG00000071967
-ENSG00000071991
-ENSG00000071994
-ENSG00000072041
-ENSG00000072042
-ENSG00000072062
-ENSG00000072071
-ENSG00000072080
-ENSG00000072110
-ENSG00000072121
-ENSG00000072133
-ENSG00000072134
-ENSG00000072135
-ENSG00000072163
-ENSG00000072182
-ENSG00000072195
-ENSG00000072201
-ENSG00000072210
-ENSG00000072274
-ENSG00000072310
-ENSG00000072315
-ENSG00000072364
-ENSG00000072401
-ENSG00000072415
-ENSG00000072422
-ENSG00000072501
-ENSG00000072506
-ENSG00000072518
-ENSG00000072571
-ENSG00000072609
-ENSG00000072657
-ENSG00000072682
-ENSG00000072694
-ENSG00000072736
-ENSG00000072756
-ENSG00000072778
-ENSG00000072786
-ENSG00000072803
-ENSG00000072818
-ENSG00000072832
-ENSG00000072840
-ENSG00000072849
-ENSG00000072858
-ENSG00000072864
-ENSG00000072952
-ENSG00000072954
-ENSG00000072958
-ENSG00000073008
-ENSG00000073050
-ENSG00000073060
-ENSG00000073067
-ENSG00000073111
-ENSG00000073146
-ENSG00000073150
-ENSG00000073169
-ENSG00000073282
-ENSG00000073331
-ENSG00000073350
-ENSG00000073417
-ENSG00000073464
-ENSG00000073536
-ENSG00000073578
-ENSG00000073584
-ENSG00000073598
-ENSG00000073605
-ENSG00000073614
-ENSG00000073670
-ENSG00000073711
-ENSG00000073712
-ENSG00000073734
-ENSG00000073737
-ENSG00000073754
-ENSG00000073756
-ENSG00000073792
-ENSG00000073803
-ENSG00000073849
-ENSG00000073861
-ENSG00000073910
-ENSG00000073921
-ENSG00000073969
-ENSG00000074047
-ENSG00000074054
-ENSG00000074071
-ENSG00000074181
-ENSG00000074201
-ENSG00000074211
-ENSG00000074219
-ENSG00000074266
-ENSG00000074276
-ENSG00000074317
-ENSG00000074319
-ENSG00000074356
-ENSG00000074370
-ENSG00000074410
-ENSG00000074416
-ENSG00000074527
-ENSG00000074582
-ENSG00000074590
-ENSG00000074603
-ENSG00000074621
-ENSG00000074657
-ENSG00000074660
-ENSG00000074695
-ENSG00000074696
-ENSG00000074706
-ENSG00000074755
-ENSG00000074771
-ENSG00000074800
-ENSG00000074803
-ENSG00000074842
-ENSG00000074855
-ENSG00000074935
-ENSG00000074964
-ENSG00000074966
-ENSG00000075035
-ENSG00000075043
-ENSG00000075073
-ENSG00000075089
-ENSG00000075131
-ENSG00000075142
-ENSG00000075151
-ENSG00000075188
-ENSG00000075213
-ENSG00000075218
-ENSG00000075223
-ENSG00000075234
-ENSG00000075239
-ENSG00000075240
-ENSG00000075275
-ENSG00000075290
-ENSG00000075292
-ENSG00000075303
-ENSG00000075336
-ENSG00000075340
-ENSG00000075388
-ENSG00000075391
-ENSG00000075399
-ENSG00000075407
-ENSG00000075413
-ENSG00000075415
-ENSG00000075420
-ENSG00000075426
-ENSG00000075429
-ENSG00000075461
-ENSG00000075539
-ENSG00000075568
-ENSG00000075618
-ENSG00000075624
-ENSG00000075643
-ENSG00000075651
-ENSG00000075673
-ENSG00000075702
-ENSG00000075711
-ENSG00000075785
-ENSG00000075790
-ENSG00000075826
-ENSG00000075856
-ENSG00000075884
-ENSG00000075886
-ENSG00000075891
-ENSG00000075914
-ENSG00000075945
-ENSG00000075975
-ENSG00000076003
-ENSG00000076043
-ENSG00000076053
-ENSG00000076067
-ENSG00000076108
-ENSG00000076201
-ENSG00000076242
-ENSG00000076248
-ENSG00000076258
-ENSG00000076321
-ENSG00000076344
-ENSG00000076351
-ENSG00000076356
-ENSG00000076382
-ENSG00000076513
-ENSG00000076554
-ENSG00000076555
-ENSG00000076604
-ENSG00000076641
-ENSG00000076650
-ENSG00000076662
-ENSG00000076685
-ENSG00000076706
-ENSG00000076716
-ENSG00000076770
-ENSG00000076826
-ENSG00000076864
-ENSG00000076924
-ENSG00000076928
-ENSG00000076944
-ENSG00000076984
-ENSG00000077009
-ENSG00000077044
-ENSG00000077063
-ENSG00000077080
-ENSG00000077092
-ENSG00000077097
-ENSG00000077147
-ENSG00000077150
-ENSG00000077152
-ENSG00000077157
-ENSG00000077232
-ENSG00000077235
-ENSG00000077238
-ENSG00000077254
-ENSG00000077264
-ENSG00000077274
-ENSG00000077279
-ENSG00000077312
-ENSG00000077327
-ENSG00000077348
-ENSG00000077380
-ENSG00000077420
-ENSG00000077454
-ENSG00000077458
-ENSG00000077463
-ENSG00000077498
-ENSG00000077514
-ENSG00000077522
-ENSG00000077549
-ENSG00000077585
-ENSG00000077616
-ENSG00000077684
-ENSG00000077713
-ENSG00000077721
-ENSG00000077782
-ENSG00000077800
-ENSG00000077935
-ENSG00000077942
-ENSG00000077943
-ENSG00000077984
-ENSG00000078018
-ENSG00000078043
-ENSG00000078053
-ENSG00000078061
-ENSG00000078070
-ENSG00000078081
-ENSG00000078098
-ENSG00000078114
-ENSG00000078124
-ENSG00000078140
-ENSG00000078142
-ENSG00000078177
-ENSG00000078237
-ENSG00000078246
-ENSG00000078269
-ENSG00000078295
-ENSG00000078304
-ENSG00000078328
-ENSG00000078369
-ENSG00000078399
-ENSG00000078401
-ENSG00000078403
-ENSG00000078487
-ENSG00000078549
-ENSG00000078579
-ENSG00000078589
-ENSG00000078596
-ENSG00000078618
-ENSG00000078668
-ENSG00000078674
-ENSG00000078687
-ENSG00000078699
-ENSG00000078725
-ENSG00000078747
-ENSG00000078795
-ENSG00000078804
-ENSG00000078808
-ENSG00000078814
-ENSG00000078898
-ENSG00000078900
-ENSG00000078902
-ENSG00000078967
-ENSG00000079101
-ENSG00000079102
-ENSG00000079112
-ENSG00000079134
-ENSG00000079150
-ENSG00000079156
-ENSG00000079215
-ENSG00000079246
-ENSG00000079257
-ENSG00000079263
-ENSG00000079277
-ENSG00000079308
-ENSG00000079313
-ENSG00000079332
-ENSG00000079335
-ENSG00000079337
-ENSG00000079385
-ENSG00000079387
-ENSG00000079393
-ENSG00000079432
-ENSG00000079435
-ENSG00000079459
-ENSG00000079462
-ENSG00000079482
-ENSG00000079557
-ENSG00000079616
-ENSG00000079689
-ENSG00000079691
-ENSG00000079739
-ENSG00000079785
-ENSG00000079805
-ENSG00000079819
-ENSG00000079841
-ENSG00000079931
-ENSG00000079950
-ENSG00000079974
-ENSG00000079999
-ENSG00000080007
-ENSG00000080031
-ENSG00000080166
-ENSG00000080189
-ENSG00000080200
-ENSG00000080224
-ENSG00000080293
-ENSG00000080298
-ENSG00000080345
-ENSG00000080371
-ENSG00000080493
-ENSG00000080503
-ENSG00000080511
-ENSG00000080546
-ENSG00000080561
-ENSG00000080572
-ENSG00000080573
-ENSG00000080603
-ENSG00000080608
-ENSG00000080618
-ENSG00000080644
-ENSG00000080709
-ENSG00000080802
-ENSG00000080815
-ENSG00000080819
-ENSG00000080822

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/metadata.json

@@ -1,19 +0,0 @@
-{
-  "embedding_id": "hf_portal_category_modality_smoke_20260728_v3",
-  "display_name": "Hugging Face Portal Category/Modality Smoke Test",
-  "species": "Homo sapiens",
-  "original_method": "deterministic analytical fixture",
-  "model_checkpoint": "not-applicable",
-  "embedding_generated_by": "Gene Embeddings portal smoke-test generator",
-  "input_data_source": "synthetic deterministic values",
-  "input_data_release": "2026-07-28",
-  "pooling_strategy": "not-applicable",
-  "original_identifier_type": "Ensembl gene ID",
-  "mapping_method": "direct use of the first 1500 identifiers from the project master gene universe",
-  "source_license": "cc0-1.0",
-  "redistribution_allowed": true,
-  "source_url": "",
-  "publication": "",
-  "category": "Protein",
-  "modality": "Synthetic protein-sequence embedding test"
-}

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/source_reference.json

@@ -1,16 +0,0 @@
-{
-  "accepted_at_utc": "2026-07-29T08:51:56.537549+00:00",
-  "central_dataset": "embeddingsSSRF/gene_embeddings",
-  "central_package_path": "data/community_contributions/hf_portal_category_modality_smoke_20260728_v3",
-  "central_package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/main/data/community_contributions/hf_portal_category_modality_smoke_20260728_v3",
-  "embedding_id": "hf_portal_category_modality_smoke_20260728_v3",
-  "embeddings_sha256": "6e64076f1885b497fe0c40b52a3176a3fb037ddd5f56ef971d6a44c2fd4cf711",
-  "source_dataset": "embeddingsSSRF/gene_embeddings_staging",
-  "source_pr_author": "danieltslz",
-  "source_pr_number": 6,
-  "source_pr_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings_staging/discussions/6",
-  "source_revision": "refs/pr/6",
-  "storage_mode": "central_hf_dataset",
-  "submission_channel": "huggingface_pull_request",
-  "validation_outcome": "PASS"
-}

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/submission.yaml

@@ -1,35 +0,0 @@
-schema_version: 1
-embedding_id: hf_portal_category_modality_smoke_20260728_v3
-display_name: Hugging Face Portal Category/Modality Smoke Test
-contributor:
-  name: Daniel Tabares
-  affiliation: ETH Zürich
-scientific:
-  original_method: deterministic analytical fixture
-  model_checkpoint: not-applicable
-  source_publication: ''
-  description: Deterministic synthetic gene vectors created solely to verify Hugging
-    Face Pull Request validation, central Dataset storage, registry publication, category
-    fallback, and static Space synchronization.
-  category: Protein
-  modality: Synthetic protein-sequence embedding test
-provenance:
-  embedding_generated_by: Gene Embeddings portal smoke-test generator
-  input_data_source: synthetic deterministic values
-  input_data_release: '2026-07-28'
-  species: Homo sapiens
-  pooling_strategy: not-applicable
-  identifier_before_mapping: Ensembl gene ID
-  mapping_method: direct use of the first 1500 identifiers from the project master
-    gene universe
-licensing:
-  source_license: cc0-1.0
-  redistribution_allowed: true
-  terms_url: https://creativecommons.org/publicdomain/zero/1.0/
-attestations:
-  information_is_accurate: true
-  rights_to_redistribute: true
-  no_sensitive_human_data: true
-  no_patient_level_data: true
-  source_terms_reviewed: true
-  acceptance_of_automatic_checks: true

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/validation_report.json

@@ -1,396 +0,0 @@
-{
-  "checks": [
-    {
-      "check_id": "file.embeddings.npz",
-      "message": "embeddings.npz exists",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "file.genes.tsv",
-      "message": "genes.tsv exists",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "file.metadata.json",
-      "message": "metadata.json exists",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "file.README.md",
-      "message": "README.md exists",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "metadata.schema",
-      "message": "metadata.json matches the schema",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "metadata.consistency.embedding_id",
-      "message": "metadata embedding_id matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "hf_portal_category_modality_smoke_20260728_v3",
-        "expected": "hf_portal_category_modality_smoke_20260728_v3"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.display_name",
-      "message": "metadata display_name matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Hugging Face Portal Category/Modality Smoke Test",
-        "expected": "Hugging Face Portal Category/Modality Smoke Test"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.species",
-      "message": "metadata species matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Homo sapiens",
-        "expected": "Homo sapiens"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.original_method",
-      "message": "metadata original_method matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "deterministic analytical fixture",
-        "expected": "deterministic analytical fixture"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.model_checkpoint",
-      "message": "metadata model_checkpoint matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "not-applicable",
-        "expected": "not-applicable"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.embedding_generated_by",
-      "message": "metadata embedding_generated_by matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Gene Embeddings portal smoke-test generator",
-        "expected": "Gene Embeddings portal smoke-test generator"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.input_data_source",
-      "message": "metadata input_data_source matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "synthetic deterministic values",
-        "expected": "synthetic deterministic values"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.input_data_release",
-      "message": "metadata input_data_release matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "2026-07-28",
-        "expected": "2026-07-28"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.pooling_strategy",
-      "message": "metadata pooling_strategy matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "not-applicable",
-        "expected": "not-applicable"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.original_identifier_type",
-      "message": "metadata original_identifier_type matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Ensembl gene ID",
-        "expected": "Ensembl gene ID"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.mapping_method",
-      "message": "metadata mapping_method matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "direct use of the first 1500 identifiers from the project master gene universe",
-        "expected": "direct use of the first 1500 identifiers from the project master gene universe"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.source_license",
-      "message": "metadata source_license matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "cc0-1.0",
-        "expected": "cc0-1.0"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.redistribution_allowed",
-      "message": "metadata redistribution_allowed matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": true,
-        "expected": true
-      }
-    },
-    {
-      "check_id": "metadata.consistency.category",
-      "message": "metadata category matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Protein",
-        "expected": "Protein"
-      }
-    },
-    {
-      "check_id": "metadata.consistency.modality",
-      "message": "metadata modality matches submission",
-      "status": "PASS",
-      "value": {
-        "actual": "Synthetic protein-sequence embedding test",
-        "expected": "Synthetic protein-sequence embedding test"
-      }
-    },
-    {
-      "check_id": "policy.species",
-      "message": "Species is allowed",
-      "status": "PASS",
-      "value": "Homo sapiens"
-    },
-    {
-      "check_id": "policy.category",
-      "message": "Category is a valid catalog category value",
-      "status": "PASS",
-      "value": "Protein"
-    },
-    {
-      "check_id": "policy.modality",
-      "message": "Modality is a valid free-text description",
-      "status": "PASS",
-      "value": "Synthetic protein-sequence embedding test"
-    },
-    {
-      "check_id": "policy.license",
-      "message": "License is on the automatic allowlist",
-      "status": "PASS",
-      "value": "cc0-1.0"
-    },
-    {
-      "check_id": "genes.nonempty",
-      "message": "All gene identifiers are non-empty",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "genes.unique",
-      "message": "Gene identifiers are unique",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "genes.format",
-      "message": "All identifiers are unversioned Ensembl gene IDs",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "genes.unknown_fraction",
-      "message": "Unknown identifier fraction is within policy",
-      "status": "PASS",
-      "value": 0.0
-    },
-    {
-      "check_id": "genes.master_coverage",
-      "message": "Master-universe coverage is within policy",
-      "status": "PASS",
-      "value": 0.07463800567248843
-    },
-    {
-      "check_id": "genes.count",
-      "message": "Gene count is within policy",
-      "status": "PASS",
-      "value": 1500
-    },
-    {
-      "check_id": "npz.uncompressed_size",
-      "message": "NPZ uncompressed size is within policy",
-      "status": "PASS",
-      "value": 48128
-    },
-    {
-      "check_id": "npz.not_encrypted",
-      "message": "NPZ archive is not encrypted",
-      "status": "PASS",
-      "value": null
-    },
-    {
-      "check_id": "matrix.single_key",
-      "message": "NPZ contains exactly the 'embeddings' array",
-      "status": "PASS",
-      "value": [
-        "embeddings"
-      ]
-    },
-    {
-      "check_id": "matrix.ndim",
-      "message": "Embedding matrix is two-dimensional",
-      "status": "PASS",
-      "value": 2
-    },
-    {
-      "check_id": "matrix.rows",
-      "message": "Matrix row count equals genes.tsv row count",
-      "status": "PASS",
-      "value": {
-        "gene_rows": 1500,
-        "matrix_rows": 1500
-      }
-    },
-    {
-      "check_id": "matrix.dimensions",
-      "message": "Embedding dimensionality is within policy",
-      "status": "PASS",
-      "value": 8
-    },
-    {
-      "check_id": "matrix.dtype",
-      "message": "Matrix dtype is float32",
-      "status": "PASS",
-      "value": "float32"
-    },
-    {
-      "check_id": "matrix.numeric",
-      "message": "Matrix has a floating numeric dtype",
-      "status": "PASS",
-      "value": "float32"
-    },
-    {
-      "check_id": "matrix.finite",
-      "message": "Matrix contains no NaN or infinite values",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "matrix.zero_vectors",
-      "message": "Matrix contains no zero vectors",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "matrix.constant_columns",
-      "message": "Matrix contains no constant columns",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "matrix.duplicate_vectors",
-      "message": "Matrix contains no exact duplicate vectors",
-      "status": "PASS",
-      "value": 0
-    },
-    {
-      "check_id": "readme.nonempty",
-      "message": "README.md contains substantive documentation",
-      "status": "PASS",
-      "value": 999
-    },
-    {
-      "check_id": "catalog.category",
-      "message": "Submitted category matched the catalog category 'Protein'.",
-      "status": "PASS",
-      "value": {
-        "published_as": "Protein",
-        "submitted": "Protein"
-      }
-    }
-  ],
-  "outcome": "PASS",
-  "provenance": {
-    "source_hf_pr_author": "danieltslz",
-    "source_hf_pr_number": 6,
-    "source_license": "cc0-1.0",
-    "submission_channel": "huggingface_pull_request",
-    "validator_environment": {
-      "numpy": "2.4.6",
-      "pandas": "2.3.3",
-      "python": "3.11.15"
-    }
-  },
-  "summary": {
-    "catalog_category": "Protein",
-    "category_fallback_applied": false,
-    "checksums_sha256": {
-      "README.md": "2478d4a4df6ca5bb78fe8661573af01b8f7c06bc1b102a17322a6dadee28fd8f",
-      "embeddings.npz": "6e64076f1885b497fe0c40b52a3176a3fb037ddd5f56ef971d6a44c2fd4cf711",
-      "genes.tsv": "306d56cb7e5e8b3b9263290ff761ed33f67c94cdfd4fc5b130c5f23325de6812",
-      "metadata.json": "dd7fc27d053f6c0f2926fa0d4262aba4c74f29b6be048f08579677a1ef01e748"
-    },
-    "constant_columns": 0,
-    "display_name": "Hugging Face Portal Category/Modality Smoke Test",
-    "dtype": "float32",
-    "duplicate_vectors": 0,
-    "embedding_id": "hf_portal_category_modality_smoke_20260728_v3",
-    "master_coverage_fraction": 0.07463800567248843,
-    "master_genes_matched": 1500,
-    "n_dimensions": 8,
-    "n_genes": 1500,
-    "norm_max": 5.894480228424072,
-    "norm_median": 2.723433017730713,
-    "norm_min": 0.9651448726654053,
-    "submitted_category": "Protein",
-    "submitted_modality": "Synthetic protein-sequence embedding test",
-    "trace": [
-      0.059461,
-      0.0,
-      0.407595,
-      0.178317,
-      1.0,
-      0.084732,
-      0.302135,
-      0.550049,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968,
-      0.556968
-    ],
-    "trace_gene": "ENSG00000000003",
-    "unknown_identifier_fraction": 0.0,
-    "value_max": 4.209617614746094,
-    "value_min": -4.017932415008545,
-    "zero_vectors": 0
-  }
-}

data/community_contributions/hf_portal_category_modality_smoke_20260728_v3/validation_summary.md

@@ -1,62 +0,0 @@
-# Candidate validation: PASS
-
-## Summary
-
-- Embedding: `hf_portal_category_modality_smoke_20260728_v3`
-- Category: `Protein`
-- Modality: `Synthetic protein-sequence embedding test`
-- Genes: 1500
-- Dimensions: 8
-- Dtype: float32
-- Master coverage: 7.46%
-
-## Checks
-
-| Check | Status | Message |
-|---|---:|---|
-| `file.embeddings.npz` | **PASS** | embeddings.npz exists |
-| `file.genes.tsv` | **PASS** | genes.tsv exists |
-| `file.metadata.json` | **PASS** | metadata.json exists |
-| `file.README.md` | **PASS** | README.md exists |
-| `metadata.schema` | **PASS** | metadata.json matches the schema |
-| `metadata.consistency.embedding_id` | **PASS** | metadata embedding_id matches submission |
-| `metadata.consistency.display_name` | **PASS** | metadata display_name matches submission |
-| `metadata.consistency.species` | **PASS** | metadata species matches submission |
-| `metadata.consistency.original_method` | **PASS** | metadata original_method matches submission |
-| `metadata.consistency.model_checkpoint` | **PASS** | metadata model_checkpoint matches submission |
-| `metadata.consistency.embedding_generated_by` | **PASS** | metadata embedding_generated_by matches submission |
-| `metadata.consistency.input_data_source` | **PASS** | metadata input_data_source matches submission |
-| `metadata.consistency.input_data_release` | **PASS** | metadata input_data_release matches submission |
-| `metadata.consistency.pooling_strategy` | **PASS** | metadata pooling_strategy matches submission |
-| `metadata.consistency.original_identifier_type` | **PASS** | metadata original_identifier_type matches submission |
-| `metadata.consistency.mapping_method` | **PASS** | metadata mapping_method matches submission |
-| `metadata.consistency.source_license` | **PASS** | metadata source_license matches submission |
-| `metadata.consistency.redistribution_allowed` | **PASS** | metadata redistribution_allowed matches submission |
-| `metadata.consistency.category` | **PASS** | metadata category matches submission |
-| `metadata.consistency.modality` | **PASS** | metadata modality matches submission |
-| `policy.species` | **PASS** | Species is allowed |
-| `policy.category` | **PASS** | Category is a valid catalog category value |
-| `policy.modality` | **PASS** | Modality is a valid free-text description |
-| `policy.license` | **PASS** | License is on the automatic allowlist |
-| `genes.nonempty` | **PASS** | All gene identifiers are non-empty |
-| `genes.unique` | **PASS** | Gene identifiers are unique |
-| `genes.format` | **PASS** | All identifiers are unversioned Ensembl gene IDs |
-| `genes.unknown_fraction` | **PASS** | Unknown identifier fraction is within policy |
-| `genes.master_coverage` | **PASS** | Master-universe coverage is within policy |
-| `genes.count` | **PASS** | Gene count is within policy |
-| `npz.uncompressed_size` | **PASS** | NPZ uncompressed size is within policy |
-| `npz.not_encrypted` | **PASS** | NPZ archive is not encrypted |
-| `matrix.single_key` | **PASS** | NPZ contains exactly the 'embeddings' array |
-| `matrix.ndim` | **PASS** | Embedding matrix is two-dimensional |
-| `matrix.rows` | **PASS** | Matrix row count equals genes.tsv row count |
-| `matrix.dimensions` | **PASS** | Embedding dimensionality is within policy |
-| `matrix.dtype` | **PASS** | Matrix dtype is float32 |
-| `matrix.numeric` | **PASS** | Matrix has a floating numeric dtype |
-| `matrix.finite` | **PASS** | Matrix contains no NaN or infinite values |
-| `matrix.zero_vectors` | **PASS** | Matrix contains no zero vectors |
-| `matrix.constant_columns` | **PASS** | Matrix contains no constant columns |
-| `matrix.duplicate_vectors` | **PASS** | Matrix contains no exact duplicate vectors |
-| `readme.nonempty` | **PASS** | README.md contains substantive documentation |
-| `catalog.category` | **PASS** | Submitted category matched the catalog category 'Protein'. |
-
-> Automatic inclusion confirms compliance with the configured technical policy. It is not independent scientific or legal verification.