Update data/embeddings/bioconceptvec_glove/README.md

data/embeddings/bioconceptvec_glove/README.md

@@ -1,9 +1,7 @@
 # Embedding name: BioConceptVec-GloVe
 
 - Modality: Biomedical literature / text
-- Algorithm: BioConceptVec GloVe Gene_<Entrez> concept vectors standardized by strict Entrez mapping
 - Embedding source URL: https://github.com/ncbi/BioConceptVec
-- Original model/code URL: https://github.com/ncbi/BioConceptVec
 
 ## Public files
 
@@ -43,15 +41,12 @@
 
 This embedding represents BioConceptVec gene concepts using the GloVe training variant.
 
-The raw vectors were not regenerated locally for this README update. The local work here was identifier cleaning, mapping to the shared master_gene_table.csv gene universe, duplicate handling, QC, and conversion into the shared public resource format.
-
 ### Provenance fields
 
     source_name: BioConceptVec-GloVe
     original_model_or_method: BioConceptVec-GloVe
     input_data_type: BioConceptVec concept JSON
     raw_source: ~/data/raw_embeddings/bioconceptvec/concept_glove.json
-    processing_script: ~/scripts/process_embeddings/process_bioconceptvec_glove_v1_1.py
     source_download_page: https://github.com/ncbi/BioConceptVec
     source_code_page: https://github.com/ncbi/BioConceptVec
     source_identifier_type: Gene_<Entrez> concept key
@@ -64,7 +59,7 @@ The raw vectors were not regenerated locally for this README update. The local w
 
 ### Mapping and processing decisions
 
-The same strict single-Entrez mapping rule as BioConceptVec-CBOW was used.
+Only BioConceptVec gene concepts with a single Entrez identifier were used. Non-gene concepts, multi-Entrez concepts, and ambiguous Entrez IDs were excluded. Accepted Entrez IDs were mapped through map_entrez_ids_all in the enriched master table. Duplicate source rows mapping to the same final gene were averaged.
 
 ### Processing workflow
 
@@ -77,9 +72,6 @@ For this embedding:
     5. Average duplicate source rows only when they map to the same final master-table gene.
     6. Save the final matrix as float32.
 
-### Important implementation decisions
-
-This README describes the standardized gene-level version included in the public resource. The source vectors were kept as released or previously generated in the project, while the mapping and QC were made consistent with the rest of the v1.1 embedding library.
 
 ### Summary of final mapping: