Update curated BioBERT PubMedBERT MSA README documentation: docs/per_embedding_readme_manual_todo.csv

docs/per_embedding_readme_manual_todo.csv

@@ -1,7 +1,7 @@
 embedding_id,readme_path,unknown_genes_tsv_columns,manual_processing_notes_status,former_processing_embedding_id,source_specific_columns_needing_manual_definition
 alphagenome_tss1mb_regulatory_tracksummary_pca256,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/README.md,,TODO,alphagenome_tss1mb_regulatory_tracksummary_pca256_v1_1,
 basenji2_tss_131kb_human_central3,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/basenji2_tss_131kb_human_central3/README.md,,CURATED,basenji2_tss_131kb_human_central3_v1_1,
-biobert_gene_protein_summary,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/biobert_gene_protein_summary/README.md,,TODO,biobert_gene_protein_summary_v1_1,
+biobert_gene_protein_summary,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/biobert_gene_protein_summary/README.md,,CURATED,biobert_gene_protein_summary_v1_1,
 bioconceptvec_cbow,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/bioconceptvec_cbow/README.md,,CURATED,bioconceptvec_cbow_v1_1,
 bioconceptvec_fasttext,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/bioconceptvec_fasttext/README.md,,CURATED,bioconceptvec_fasttext_v1_1,
 bioconceptvec_glove,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/bioconceptvec_glove/README.md,,CURATED,bioconceptvec_glove_v1_1,
@@ -28,7 +28,7 @@ hyenadna_medium_160k_cds,/local/home/dtabares/data/hf_gene_embeddings/data/embed
 mahi_all_contexts_mean,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/mahi_all_contexts_mean/README.md,,CURATED,mahi_all_contexts_mean_v1_1,
 mahi_global,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/mahi_global/README.md,,CURATED,mahi_global_v1_1,
 mashup_string,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/mashup_string/README.md,,CURATED,mashup_string_v1_1,
-msa_transformer_depth1_uniprot_human,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/msa_transformer_depth1_uniprot_human/README.md,,TODO,msa_transformer_depth1_uniprot_human_v1_1,
+msa_transformer_depth1_uniprot_human,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/msa_transformer_depth1_uniprot_human/README.md,,CURATED,msa_transformer_depth1_uniprot_human_v1_1,
 newt_archs4_256,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/newt_archs4_256/README.md,,CURATED,newt_archs4_256_v1_1,
 newt_cellnet,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/newt_cellnet/README.md,,CURATED,newt_cellnet_v1_1,
 newt_go_256,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/newt_go_256/README.md,,CURATED,newt_go_256_v1_1,
@@ -59,7 +59,7 @@ probe_t5,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/probe_t5/R
 probe_tcga_embedding,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/probe_tcga_embedding/README.md,,CURATED,probe_tcga_embedding_v1_1,
 probe_unirep,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/probe_unirep/README.md,,CURATED,probe_unirep_v1_1,
 probe_xlnet,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/probe_xlnet/README.md,,CURATED,probe_xlnet_v1_1,
-pubmedbert_gene_protein_summary,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/pubmedbert_gene_protein_summary/README.md,,TODO,pubmedbert_gene_protein_summary_v1_1,
+pubmedbert_gene_protein_summary,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/pubmedbert_gene_protein_summary/README.md,,CURATED,pubmedbert_gene_protein_summary_v1_1,
 rnafm_full_transcript,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/rnafm_full_transcript/README.md,,CURATED,rnafm_full_transcript_v1_1,
 scfoundation_gene_pos,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/scfoundation_gene_pos/README.md,,CURATED,scfoundation_gene_pos_v1_1,
 scgpt_pancancer,/local/home/dtabares/data/hf_gene_embeddings/data/embeddings/scgpt_pancancer/README.md,,CURATED,scgpt_pancancer_v1_1,