Update data/embeddings/genept_model3_gene_protein_conservative/README.md
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data/embeddings/genept_model3_gene_protein_conservative/README.md
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# Embedding name: GenePT-Model3-GeneProtein
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- Modality: Biomedical literature + protein text
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- Algorithm: GenePT Model3 gene+protein text embedding standardized with conservative direct-first symbol mapping
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- Embedding source URL: https://zenodo.org/records/10833191
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- Original model/code URL: https://github.com/yiqunchen/GenePT
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This embedding represents genes using GenePT Model3 gene+protein summary text embeddings.
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The raw vectors were not regenerated locally for this README update. The local work here was identifier cleaning, mapping to the shared master_gene_table.csv gene universe, duplicate handling, QC, and conversion into the shared public resource format.
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### Provenance fields
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source_name: GenePT-Model3-GeneProtein
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5. Average duplicate source rows only when they map to the same final master-table gene.
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6. Save the final matrix as float32.
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### Important implementation decisions
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This README describes the standardized gene-level version included in the public resource. The source vectors were kept as released or previously generated in the project, while the mapping and QC were made consistent with the rest of the v1.1 embedding library.
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### Summary of final mapping:
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# Embedding name: GenePT-Model3-GeneProtein
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- Modality: Biomedical literature + protein text
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- Embedding source URL: https://zenodo.org/records/10833191
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- Original model/code URL: https://github.com/yiqunchen/GenePT
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This embedding represents genes using GenePT Model3 gene+protein summary text embeddings.
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### Provenance fields
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source_name: GenePT-Model3-GeneProtein
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5. Average duplicate source rows only when they map to the same final master-table gene.
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6. Save the final matrix as float32.
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### Summary of final mapping:
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