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def set_info(self, info):
""" set my state from the passed info """
idx = info.get(self.name)
if idx is not None:
self.__dict__.update(idx) |
def validate_metadata(self, handler):
""" validate that kind=category does not change the categories """
if self.meta == 'category':
new_metadata = self.metadata
cur_metadata = handler.read_metadata(self.cname)
if (new_metadata is not None and cur_metadata is not None... |
def write_metadata(self, handler):
""" set the meta data """
if self.metadata is not None:
handler.write_metadata(self.cname, self.metadata) |
def convert(self, values, nan_rep, encoding, errors):
""" set the values from this selection: take = take ownership """
self.values = Int64Index(np.arange(self.table.nrows))
return self |
def create_for_block(
cls, i=None, name=None, cname=None, version=None, **kwargs):
""" return a new datacol with the block i """
if cname is None:
cname = name or 'values_block_{idx}'.format(idx=i)
if name is None:
name = cname
# prior to 0.10.1, we ... |
def set_metadata(self, metadata):
""" record the metadata """
if metadata is not None:
metadata = np.array(metadata, copy=False).ravel()
self.metadata = metadata |
def set_atom(self, block, block_items, existing_col, min_itemsize,
nan_rep, info, encoding=None, errors='strict'):
""" create and setup my atom from the block b """
self.values = list(block_items)
# short-cut certain block types
if block.is_categorical:
ret... |
def get_atom_coltype(self, kind=None):
""" return the PyTables column class for this column """
if kind is None:
kind = self.kind
if self.kind.startswith('uint'):
col_name = "UInt{name}Col".format(name=kind[4:])
else:
col_name = "{name}Col".format(name... |
def validate_attr(self, append):
"""validate that we have the same order as the existing & same dtype"""
if append:
existing_fields = getattr(self.attrs, self.kind_attr, None)
if (existing_fields is not None and
existing_fields != list(self.values)):
... |
def convert(self, values, nan_rep, encoding, errors):
"""set the data from this selection (and convert to the correct dtype
if we can)
"""
# values is a recarray
if values.dtype.fields is not None:
values = values[self.cname]
self.set_data(values)
#... |
def get_attr(self):
""" get the data for this column """
self.values = getattr(self.attrs, self.kind_attr, None)
self.dtype = getattr(self.attrs, self.dtype_attr, None)
self.meta = getattr(self.attrs, self.meta_attr, None)
self.set_kind() |
def set_attr(self):
""" set the data for this column """
setattr(self.attrs, self.kind_attr, self.values)
setattr(self.attrs, self.meta_attr, self.meta)
if self.dtype is not None:
setattr(self.attrs, self.dtype_attr, self.dtype) |
def set_version(self):
""" compute and set our version """
version = _ensure_decoded(
getattr(self.group._v_attrs, 'pandas_version', None))
try:
self.version = tuple(int(x) for x in version.split('.'))
if len(self.version) == 2:
self.version = ... |
def set_object_info(self):
""" set my pandas type & version """
self.attrs.pandas_type = str(self.pandas_kind)
self.attrs.pandas_version = str(_version)
self.set_version() |
def infer_axes(self):
""" infer the axes of my storer
return a boolean indicating if we have a valid storer or not """
s = self.storable
if s is None:
return False
self.get_attrs()
return True |
def delete(self, where=None, start=None, stop=None, **kwargs):
"""
support fully deleting the node in its entirety (only) - where
specification must be None
"""
if com._all_none(where, start, stop):
self._handle.remove_node(self.group, recursive=True)
retu... |
def validate_read(self, kwargs):
"""
remove table keywords from kwargs and return
raise if any keywords are passed which are not-None
"""
kwargs = copy.copy(kwargs)
columns = kwargs.pop('columns', None)
if columns is not None:
raise TypeError("cannot ... |
def set_attrs(self):
""" set our object attributes """
self.attrs.encoding = self.encoding
self.attrs.errors = self.errors |
def get_attrs(self):
""" retrieve our attributes """
self.encoding = _ensure_encoding(getattr(self.attrs, 'encoding', None))
self.errors = _ensure_decoded(getattr(self.attrs, 'errors', 'strict'))
for n in self.attributes:
setattr(self, n, _ensure_decoded(getattr(self.attrs, n... |
def read_array(self, key, start=None, stop=None):
""" read an array for the specified node (off of group """
import tables
node = getattr(self.group, key)
attrs = node._v_attrs
transposed = getattr(attrs, 'transposed', False)
if isinstance(node, tables.VLArray):
... |
def write_array_empty(self, key, value):
""" write a 0-len array """
# ugly hack for length 0 axes
arr = np.empty((1,) * value.ndim)
self._handle.create_array(self.group, key, arr)
getattr(self.group, key)._v_attrs.value_type = str(value.dtype)
getattr(self.group, key)._... |
def validate_read(self, kwargs):
"""
we don't support start, stop kwds in Sparse
"""
kwargs = super().validate_read(kwargs)
if 'start' in kwargs or 'stop' in kwargs:
raise NotImplementedError("start and/or stop are not supported "
... |
def write(self, obj, **kwargs):
""" write it as a collection of individual sparse series """
super().write(obj, **kwargs)
for name, ss in obj.items():
key = 'sparse_series_{name}'.format(name=name)
if key not in self.group._v_children:
node = self._handle.... |
def validate(self, other):
""" validate against an existing table """
if other is None:
return
if other.table_type != self.table_type:
raise TypeError(
"incompatible table_type with existing "
"[{other} - {self}]".format(
... |
def validate_metadata(self, existing):
""" create / validate metadata """
self.metadata = [
c.name for c in self.values_axes if c.metadata is not None] |
def validate_multiindex(self, obj):
"""validate that we can store the multi-index; reset and return the
new object
"""
levels = [l if l is not None else "level_{0}".format(i)
for i, l in enumerate(obj.index.names)]
try:
return obj.reset_index(), leve... |
def nrows_expected(self):
""" based on our axes, compute the expected nrows """
return np.prod([i.cvalues.shape[0] for i in self.index_axes]) |
def data_orientation(self):
"""return a tuple of my permutated axes, non_indexable at the front"""
return tuple(itertools.chain([int(a[0]) for a in self.non_index_axes],
[int(a.axis) for a in self.index_axes])) |
def queryables(self):
""" return a dict of the kinds allowable columns for this object """
# compute the values_axes queryables
return dict(
[(a.cname, a) for a in self.index_axes] +
[(self.storage_obj_type._AXIS_NAMES[axis], None)
for axis, values in self.n... |
def _get_metadata_path(self, key):
""" return the metadata pathname for this key """
return "{group}/meta/{key}/meta".format(group=self.group._v_pathname,
key=key) |
def write_metadata(self, key, values):
"""
write out a meta data array to the key as a fixed-format Series
Parameters
----------
key : string
values : ndarray
"""
values = Series(values)
self.parent.put(self._get_metadata_path(key), values, forma... |
def read_metadata(self, key):
""" return the meta data array for this key """
if getattr(getattr(self.group, 'meta', None), key, None) is not None:
return self.parent.select(self._get_metadata_path(key))
return None |
def set_attrs(self):
""" set our table type & indexables """
self.attrs.table_type = str(self.table_type)
self.attrs.index_cols = self.index_cols()
self.attrs.values_cols = self.values_cols()
self.attrs.non_index_axes = self.non_index_axes
self.attrs.data_columns = self.d... |
def get_attrs(self):
""" retrieve our attributes """
self.non_index_axes = getattr(
self.attrs, 'non_index_axes', None) or []
self.data_columns = getattr(
self.attrs, 'data_columns', None) or []
self.info = getattr(
self.attrs, 'info', None) or dict()
... |
def validate_version(self, where=None):
""" are we trying to operate on an old version? """
if where is not None:
if (self.version[0] <= 0 and self.version[1] <= 10 and
self.version[2] < 1):
ws = incompatibility_doc % '.'.join(
[str(x) ... |
def validate_min_itemsize(self, min_itemsize):
"""validate the min_itemisze doesn't contain items that are not in the
axes this needs data_columns to be defined
"""
if min_itemsize is None:
return
if not isinstance(min_itemsize, dict):
return
q = ... |
def indexables(self):
""" create/cache the indexables if they don't exist """
if self._indexables is None:
self._indexables = []
# index columns
self._indexables.extend([
IndexCol(name=name, axis=axis, pos=i)
for i, (axis, name) in en... |
def create_index(self, columns=None, optlevel=None, kind=None):
"""
Create a pytables index on the specified columns
note: cannot index Time64Col() or ComplexCol currently;
PyTables must be >= 3.0
Parameters
----------
columns : False (don't create an index),... |
def read_axes(self, where, **kwargs):
"""create and return the axes sniffed from the table: return boolean
for success
"""
# validate the version
self.validate_version(where)
# infer the data kind
if not self.infer_axes():
return False
# cre... |
def validate_data_columns(self, data_columns, min_itemsize):
"""take the input data_columns and min_itemize and create a data
columns spec
"""
if not len(self.non_index_axes):
return []
axis, axis_labels = self.non_index_axes[0]
info = self.info.get(axis, di... |
def create_axes(self, axes, obj, validate=True, nan_rep=None,
data_columns=None, min_itemsize=None, **kwargs):
""" create and return the axes
leagcy tables create an indexable column, indexable index,
non-indexable fields
Parameters:
-----------
... |
def process_axes(self, obj, columns=None):
""" process axes filters """
# make a copy to avoid side effects
if columns is not None:
columns = list(columns)
# make sure to include levels if we have them
if columns is not None and self.is_multi_index:
for ... |
def create_description(self, complib=None, complevel=None,
fletcher32=False, expectedrows=None):
""" create the description of the table from the axes & values """
# provided expected rows if its passed
if expectedrows is None:
expectedrows = max(self.nrow... |
def read_coordinates(self, where=None, start=None, stop=None, **kwargs):
"""select coordinates (row numbers) from a table; return the
coordinates object
"""
# validate the version
self.validate_version(where)
# infer the data kind
if not self.infer_axes():
... |
def read_column(self, column, where=None, start=None, stop=None):
"""return a single column from the table, generally only indexables
are interesting
"""
# validate the version
self.validate_version()
# infer the data kind
if not self.infer_axes():
r... |
def read(self, where=None, columns=None, **kwargs):
"""we have n indexable columns, with an arbitrary number of data
axes
"""
if not self.read_axes(where=where, **kwargs):
return None
raise NotImplementedError("Panel is removed in pandas 0.25.0") |
def write_data(self, chunksize, dropna=False):
""" we form the data into a 2-d including indexes,values,mask
write chunk-by-chunk """
names = self.dtype.names
nrows = self.nrows_expected
# if dropna==True, then drop ALL nan rows
masks = []
if dropna:
... |
def write_data_chunk(self, rows, indexes, mask, values):
"""
Parameters
----------
rows : an empty memory space where we are putting the chunk
indexes : an array of the indexes
mask : an array of the masks
values : an array of the values
"""
# 0 l... |
def write(self, obj, data_columns=None, **kwargs):
""" we are going to write this as a frame table """
if not isinstance(obj, DataFrame):
name = obj.name or 'values'
obj = DataFrame({name: obj}, index=obj.index)
obj.columns = [name]
return super().write(obj=ob... |
def write(self, obj, **kwargs):
""" we are going to write this as a frame table """
name = obj.name or 'values'
obj, self.levels = self.validate_multiindex(obj)
cols = list(self.levels)
cols.append(name)
obj.columns = cols
return super().write(obj=obj, **kwargs) |
def get_attrs(self):
""" retrieve our attributes """
self.non_index_axes = []
self.nan_rep = None
self.levels = []
self.index_axes = [a.infer(self)
for a in self.indexables if a.is_an_indexable]
self.values_axes = [a.infer(self)
... |
def indexables(self):
""" create the indexables from the table description """
if self._indexables is None:
d = self.description
# the index columns is just a simple index
self._indexables = [GenericIndexCol(name='index', axis=0)]
for i, n in enumerate(... |
def generate(self, where):
""" where can be a : dict,list,tuple,string """
if where is None:
return None
q = self.table.queryables()
try:
return Expr(where, queryables=q, encoding=self.table.encoding)
except NameError:
# raise a nice message, ... |
def select(self):
"""
generate the selection
"""
if self.condition is not None:
return self.table.table.read_where(self.condition.format(),
start=self.start,
stop=self.stop)
... |
def select_coords(self):
"""
generate the selection
"""
start, stop = self.start, self.stop
nrows = self.table.nrows
if start is None:
start = 0
elif start < 0:
start += nrows
if self.stop is None:
stop = nrows
e... |
def astype(self, dtype, copy=True):
"""
Cast to a NumPy array with 'dtype'.
Parameters
----------
dtype : str or dtype
Typecode or data-type to which the array is cast.
copy : bool, default True
Whether to copy the data, even if not necessary. If ... |
def argsort(self, ascending=True, kind='quicksort', *args, **kwargs):
"""
Return the indices that would sort this array.
Parameters
----------
ascending : bool, default True
Whether the indices should result in an ascending
or descending sort.
kin... |
def fillna(self, value=None, method=None, limit=None):
"""
Fill NA/NaN values using the specified method.
Parameters
----------
value : scalar, array-like
If a scalar value is passed it is used to fill all missing values.
Alternatively, an array-like 'val... |
def shift(
self,
periods: int = 1,
fill_value: object = None,
) -> ABCExtensionArray:
"""
Shift values by desired number.
Newly introduced missing values are filled with
``self.dtype.na_value``.
.. versionadded:: 0.24.0
Parameter... |
def unique(self):
"""
Compute the ExtensionArray of unique values.
Returns
-------
uniques : ExtensionArray
"""
from pandas import unique
uniques = unique(self.astype(object))
return self._from_sequence(uniques, dtype=self.dtype) |
def searchsorted(self, value, side="left", sorter=None):
"""
Find indices where elements should be inserted to maintain order.
.. versionadded:: 0.24.0
Find the indices into a sorted array `self` (a) such that, if the
corresponding elements in `value` were inserted before the i... |
def _values_for_factorize(self) -> Tuple[np.ndarray, Any]:
"""
Return an array and missing value suitable for factorization.
Returns
-------
values : ndarray
An array suitable for factorization. This should maintain order
and be a supported dtype (Float6... |
def factorize(
self,
na_sentinel: int = -1,
) -> Tuple[np.ndarray, ABCExtensionArray]:
"""
Encode the extension array as an enumerated type.
Parameters
----------
na_sentinel : int, default -1
Value to use in the `labels` array to indicate... |
def take(
self,
indices: Sequence[int],
allow_fill: bool = False,
fill_value: Any = None
) -> ABCExtensionArray:
"""
Take elements from an array.
Parameters
----------
indices : sequence of integers
Indices to be ta... |
def _formatter(
self,
boxed: bool = False,
) -> Callable[[Any], Optional[str]]:
"""Formatting function for scalar values.
This is used in the default '__repr__'. The returned formatting
function receives instances of your scalar type.
Parameters
----... |
def _reduce(self, name, skipna=True, **kwargs):
"""
Return a scalar result of performing the reduction operation.
Parameters
----------
name : str
Name of the function, supported values are:
{ any, all, min, max, sum, mean, median, prod,
std, ... |
def _create_method(cls, op, coerce_to_dtype=True):
"""
A class method that returns a method that will correspond to an
operator for an ExtensionArray subclass, by dispatching to the
relevant operator defined on the individual elements of the
ExtensionArray.
Parameters
... |
def ea_passthrough(array_method):
"""
Make an alias for a method of the underlying ExtensionArray.
Parameters
----------
array_method : method on an Array class
Returns
-------
method
"""
def method(self, *args, **kwargs):
return array_method(self._data, *args, **kwarg... |
def _create_comparison_method(cls, op):
"""
Create a comparison method that dispatches to ``cls.values``.
"""
def wrapper(self, other):
if isinstance(other, ABCSeries):
# the arrays defer to Series for comparison ops but the indexes
# don't, s... |
def equals(self, other):
"""
Determines if two Index objects contain the same elements.
"""
if self.is_(other):
return True
if not isinstance(other, ABCIndexClass):
return False
elif not isinstance(other, type(self)):
try:
... |
def _join_i8_wrapper(joinf, dtype, with_indexers=True):
"""
Create the join wrapper methods.
"""
from pandas.core.arrays.datetimelike import DatetimeLikeArrayMixin
@staticmethod
def wrapper(left, right):
if isinstance(left, (np.ndarray, ABCIndex, ABCSeries,
... |
def sort_values(self, return_indexer=False, ascending=True):
"""
Return sorted copy of Index.
"""
if return_indexer:
_as = self.argsort()
if not ascending:
_as = _as[::-1]
sorted_index = self.take(_as)
return sorted_index, _... |
def min(self, axis=None, skipna=True, *args, **kwargs):
"""
Return the minimum value of the Index or minimum along
an axis.
See Also
--------
numpy.ndarray.min
Series.min : Return the minimum value in a Series.
"""
nv.validate_min(args, kwargs)
... |
def argmin(self, axis=None, skipna=True, *args, **kwargs):
"""
Returns the indices of the minimum values along an axis.
See `numpy.ndarray.argmin` for more information on the
`axis` parameter.
See Also
--------
numpy.ndarray.argmin
"""
nv.validat... |
def max(self, axis=None, skipna=True, *args, **kwargs):
"""
Return the maximum value of the Index or maximum along
an axis.
See Also
--------
numpy.ndarray.max
Series.max : Return the maximum value in a Series.
"""
nv.validate_max(args, kwargs)
... |
def argmax(self, axis=None, skipna=True, *args, **kwargs):
"""
Returns the indices of the maximum values along an axis.
See `numpy.ndarray.argmax` for more information on the
`axis` parameter.
See Also
--------
numpy.ndarray.argmax
"""
nv.validat... |
def _format_attrs(self):
"""
Return a list of tuples of the (attr,formatted_value).
"""
attrs = super()._format_attrs()
for attrib in self._attributes:
if attrib == 'freq':
freq = self.freqstr
if freq is not None:
fr... |
def _convert_scalar_indexer(self, key, kind=None):
"""
We don't allow integer or float indexing on datetime-like when using
loc.
Parameters
----------
key : label of the slice bound
kind : {'ix', 'loc', 'getitem', 'iloc'} or None
"""
assert kind ... |
def _add_datetimelike_methods(cls):
"""
Add in the datetimelike methods (as we may have to override the
superclass).
"""
def __add__(self, other):
# dispatch to ExtensionArray implementation
result = self._data.__add__(maybe_unwrap_index(other))
... |
def isin(self, values):
"""
Compute boolean array of whether each index value is found in the
passed set of values.
Parameters
----------
values : set or sequence of values
Returns
-------
is_contained : ndarray (boolean dtype)
"""
... |
def _summary(self, name=None):
"""
Return a summarized representation.
Parameters
----------
name : str
name to use in the summary representation
Returns
-------
String with a summarized representation of the index
"""
formatt... |
def _concat_same_dtype(self, to_concat, name):
"""
Concatenate to_concat which has the same class.
"""
attribs = self._get_attributes_dict()
attribs['name'] = name
# do not pass tz to set because tzlocal cannot be hashed
if len({str(x.dtype) for x in to_concat}) !... |
def shift(self, periods, freq=None):
"""
Shift index by desired number of time frequency increments.
This method is for shifting the values of datetime-like indexes
by a specified time increment a given number of times.
Parameters
----------
periods : int
... |
def _single_replace(self, to_replace, method, inplace, limit):
"""
Replaces values in a Series using the fill method specified when no
replacement value is given in the replace method
"""
if self.ndim != 1:
raise TypeError('cannot replace {0} with method {1} on a {2}'
... |
def _doc_parms(cls):
"""Return a tuple of the doc parms."""
axis_descr = "{%s}" % ', '.join("{0} ({1})".format(a, i)
for i, a in enumerate(cls._AXIS_ORDERS))
name = (cls._constructor_sliced.__name__
if cls._AXIS_LEN > 1 else 'scalar')
name2 = cls.__name__
... |
def _init_mgr(self, mgr, axes=None, dtype=None, copy=False):
""" passed a manager and a axes dict """
for a, axe in axes.items():
if axe is not None:
mgr = mgr.reindex_axis(axe,
axis=self._get_block_manager_axis(a),
... |
def _validate_dtype(self, dtype):
""" validate the passed dtype """
if dtype is not None:
dtype = pandas_dtype(dtype)
# a compound dtype
if dtype.kind == 'V':
raise NotImplementedError("compound dtypes are not implemented"
... |
def _setup_axes(cls, axes, info_axis=None, stat_axis=None, aliases=None,
slicers=None, axes_are_reversed=False, build_axes=True,
ns=None, docs=None):
"""Provide axes setup for the major PandasObjects.
Parameters
----------
axes : the names of the ... |
def _construct_axes_dict(self, axes=None, **kwargs):
"""Return an axes dictionary for myself."""
d = {a: self._get_axis(a) for a in (axes or self._AXIS_ORDERS)}
d.update(kwargs)
return d |
def _construct_axes_dict_from(self, axes, **kwargs):
"""Return an axes dictionary for the passed axes."""
d = {a: ax for a, ax in zip(self._AXIS_ORDERS, axes)}
d.update(kwargs)
return d |
def _construct_axes_dict_for_slice(self, axes=None, **kwargs):
"""Return an axes dictionary for myself."""
d = {self._AXIS_SLICEMAP[a]: self._get_axis(a)
for a in (axes or self._AXIS_ORDERS)}
d.update(kwargs)
return d |
def _construct_axes_from_arguments(
self, args, kwargs, require_all=False, sentinel=None):
"""Construct and returns axes if supplied in args/kwargs.
If require_all, raise if all axis arguments are not supplied
return a tuple of (axes, kwargs).
sentinel specifies the default... |
def _get_block_manager_axis(cls, axis):
"""Map the axis to the block_manager axis."""
axis = cls._get_axis_number(axis)
if cls._AXIS_REVERSED:
m = cls._AXIS_LEN - 1
return m - axis
return axis |
def _get_space_character_free_column_resolvers(self):
"""Return the space character free column resolvers of a dataframe.
Column names with spaces are 'cleaned up' so that they can be referred
to by backtick quoting.
Used in :meth:`DataFrame.eval`.
"""
from pandas.core.c... |
def shape(self):
"""
Return a tuple of axis dimensions
"""
return tuple(len(self._get_axis(a)) for a in self._AXIS_ORDERS) |
def transpose(self, *args, **kwargs):
"""
Permute the dimensions of the %(klass)s
Parameters
----------
args : %(args_transpose)s
copy : boolean, default False
Make a copy of the underlying data. Mixed-dtype data will
always result in a copy
... |
def swapaxes(self, axis1, axis2, copy=True):
"""
Interchange axes and swap values axes appropriately.
Returns
-------
y : same as input
"""
i = self._get_axis_number(axis1)
j = self._get_axis_number(axis2)
if i == j:
if copy:
... |
def droplevel(self, level, axis=0):
"""
Return DataFrame with requested index / column level(s) removed.
.. versionadded:: 0.24.0
Parameters
----------
level : int, str, or list-like
If a string is given, must be the name of a level
If list-like,... |
def pop(self, item):
"""
Return item and drop from frame. Raise KeyError if not found.
Parameters
----------
item : str
Label of column to be popped.
Returns
-------
Series
Examples
--------
>>> df = pd.DataFrame([('f... |
def squeeze(self, axis=None):
"""
Squeeze 1 dimensional axis objects into scalars.
Series or DataFrames with a single element are squeezed to a scalar.
DataFrames with a single column or a single row are squeezed to a
Series. Otherwise the object is unchanged.
This meth... |
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