| PertResolve-Bench data release |
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| This repository is a mixed data release. It contains author-generated |
| benchmark annotations and compact derived products, together with files |
| derived from public third-party datasets. The source datasets retain their |
| original licences and attribution requirements; this repository does not grant |
| a blanket Apache-2.0 licence for those files. |
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| Source records represented in the release: |
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| * TP53 and KRAS: Ursu et al., GEO accession GSE161824. |
| * GATA1: Martin-Rufino et al., GEO accession GSE215253, with the processed |
| object distributed through the PerturbNet repository |
| (cyclopeta/PerturbNet_reproduce). |
| * JAK1: Cooper et al., ENA PRJEB48915 and Zenodo record 10418435. |
| * scPerturb resources: source manifest and Zenodo record 10044268, including |
| the Norman, Replogle, Adamson, McFarland, Frangieh, Papalexi and sciPlex3 |
| objects included under `external/scperturb/`. |
| * VCC: Arc Virtual Cell Atlas / Cell 2025, DOI 10.1016/j.cell.2025.06.008. |
| * GSE306429: GEO accession GSE306429. |
| * PerturbMulti: GEO accession GSE275483; the source release identifies the |
| processed RNA/protein objects as CC BY 4.0. |
| * Molecular features: FAIR ESM-1v (Meier et al., 2021). Only derived |
| embeddings are included; model weights are not redistributed. |
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| The repository-level Hugging Face metadata therefore uses `license: other`. |
| The benchmark inventory, annotations and provenance text authored for this |
| release are provided for research use with attribution to the PertResolve |
| authors. For every source-derived file, users must comply with the original |
| provider's licence, access conditions and citation requirements. Nothing in |
| this notice changes those terms or grants permission to redistribute material |
| where the source provider does not permit it. |
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