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Document embedding provenance and source terms
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NOTICE
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@@ -8,6 +8,8 @@ datasets retain their original licences and attribution requirements:
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* GATA1: Martin-Rufino et al., GEO accession GSE215253; processed object from
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the PerturbNet repository (cyclopeta/PerturbNet_reproduce).
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* JAK1: Cooper et al., ENA PRJEB48915; Zenodo record 10418435.
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The repository-level Hugging Face metadata therefore uses `license: other`.
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No repository-level Apache-2.0 grant is made here, and the derived release
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* GATA1: Martin-Rufino et al., GEO accession GSE215253; processed object from
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the PerturbNet repository (cyclopeta/PerturbNet_reproduce).
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* JAK1: Cooper et al., ENA PRJEB48915; Zenodo record 10418435.
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* Molecular features: FAIR ESM-1v model (Meier et al., 2021); only derived
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embeddings are included and model weights are not redistributed.
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The repository-level Hugging Face metadata therefore uses `license: other`.
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No repository-level Apache-2.0 grant is made here, and the derived release
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README.md
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@@ -47,7 +47,9 @@ benchmark. The underlying scSNV-seq data are available from
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### Molecular features and compact response data
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- `allele/esm1v_embeddings.npz`: ESM-1v variant embeddings used as molecular
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features; no model weights are included.
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- `allele/real_deltas.npz`: compact variant-level response profiles derived
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from the processed allele datasets. This is not a cell-level matrix.
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- `allele/barcode_rebuild_provenance.json`: provenance, source checksums and
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### Molecular features and compact response data
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- `allele/esm1v_embeddings.npz`: ESM-1v variant embeddings used as molecular
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features; no model weights are included. The embeddings were generated with
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the FAIR ESM-1v model (Meier et al., 2021; see the
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[FAIR ESM repository](https://github.com/facebookresearch/esm)).
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- `allele/real_deltas.npz`: compact variant-level response profiles derived
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from the processed allele datasets. This is not a cell-level matrix.
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- `allele/barcode_rebuild_provenance.json`: provenance, source checksums and
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