VCDesign / inputs /source_goal_manifest.json
Boom5426's picture
Add manifests, evaluation records, and external baseline scores
f6bed3b verified
Raw History Blame Contribute Delete
2.76 kB
{
"access_firewall": {
"builder_scope": "raw endpoint asset generation only; no utility, model fitting, scoring, ranking, or CHECK evaluation",
"model_scope": "model code may materialize G_fit/G_select only; G_check endpoint rows remain inaccessible until a separately authorized final evaluation"
},
"aggregation": {
"goal": "mean normalized perturbation expression, separately in A/B batch-disjoint views",
"source": "view-specific perturbation-cell-incidence weighted mean of batch-specific normalized control pseudobulks",
"source_control_profile_count_per_view": 9205,
"source_varies_by_query": true
},
"arrays": {
"row_metadata": {
"path": "inputs/source_goal_row_metadata.parquet",
"rows": 18410
},
"x_goal_ab": {
"dtype": "float32",
"path": "inputs/goal_states.npy",
"shape": [
2,
9205,
8248
]
},
"x_source_ab": {
"dtype": "float32",
"path": "inputs/source_states.npy",
"shape": [
2,
9205,
8248
]
}
},
"delta_invariant": {
"all_elements_close": true,
"atol": 1e-05,
"expression": "x_goal_ab - x_source_ab == frozen response cache",
"fraction_close": 1.0,
"max_abs_error": 4.1835010051727295e-06,
"mean_abs_error": 1.666111945774382e-08,
"rtol": 1e-05
},
"frozen_delta_cache": {
"cache_ids_path": "inputs/eligible_ids.npy",
"cache_ids_sha256": "40e104ed924c109d621f15bc5bb3bf899ca89c3f14db046b5aa5ae0c4ce611a7",
"path": "inputs/responses_ab.npy",
"sha256": "bb48bae7f864c66b242a77cef064ff967b418d22bb11416630548f6a6d094a94",
"shape": [
2,
9205,
8248
]
},
"gate1": {
"path": "records/source_goal/pairing_semantics_audit.json",
"sha256": "f6a436c40f488a15e4a54b3f5f125900aa19be9beb8b30f5ca55069896679e44",
"status": "GATE_1_PASS_PAIRING_SEMANTICS_RESOLVED"
},
"gene_order": {
"count": 8248,
"exact_raw_metadata_match": true,
"path": "inputs/gene_order.txt"
},
"generation": {
"code_commit": "b097634",
"code_path": "CODE_PACKAGE:src/gene_open_inverse/model/source_goal_asset_resolution_v1/materialize_source_goal.py",
"code_sha256": "c105b6883e01fa41985193947078fe735739fb6daab741041385c4c4d00a49e8"
},
"preprocessing": "per-cell library-size normalization to 10000; log1p; valid cells only; float32 accumulation and endpoint storage",
"raw_source": {
"path": "PUBLIC_SOURCE/ReplogleWeissman2022_K562_gwps.h5ad",
"sha256": "d3269d9c863d96555eba768b42ab330cc1b57493cd33b4ac8fe7fbab8278f104",
"shape": [
1989578,
8248
]
},
"schema": "SOURCE_GOAL_ASSET_RESOLUTION_V1_GATE_2",
"status": "FROZEN_SOURCE_GOAL_ASSETS_COMPLETE"
}