Chase Mateusiak commited on
Commit
fac78bf
·
1 Parent(s): 9e40057

addressing typos in readme

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Files changed (2) hide show
  1. .gitignore +1 -0
  2. README.md +9 -7
.gitignore ADDED
@@ -0,0 +1 @@
 
 
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+ deprecated/
README.md CHANGED
@@ -5,13 +5,12 @@ language:
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  tags:
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  - genomics
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  - yeast
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- - transcription
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  - perturbation
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- - response
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  - overexpression
 
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  pretty_name: Hackett, 2020 Overexpression
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- size_categories:
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- - 1M<n<10M
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  experimental_conditions:
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  temperature_celsius: 30
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  cultivation_method: chemostat
@@ -62,7 +61,7 @@ features:
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  - name: time
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  dtype:
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  class_label:
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- names: [0, 2, 5, 7, 8, 10, 12, 15, 20, 30, 45, 60, 90, 100, 120, 180, 290]
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  description: time point (minutes)
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  role: experimental_condition
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  - name: mechanism
@@ -176,8 +175,9 @@ configs:
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  description: >-
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  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
 
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  - name: db_id
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- dtype: integer
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  description: >-
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  an old unique identifer, for use internally only. Deprecated and will be removed eventually.
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  Do not use in analysis. db_id = 0, for GEV and Z3EV, means that those samples are not
@@ -205,8 +205,9 @@ configs:
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  description: >-
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  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
 
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  - name: db_id
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- dtype: integer
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  description: >-
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  an old unique identifer, for use internally only. Deprecated and will be removed eventually.
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  Do not use in analysis. db_id = 0, for GEV and Z3EV, means that those samples are not
@@ -226,6 +227,7 @@ configs:
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  description: >-
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  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
 
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  ---
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  # Hackett 2020
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  tags:
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  - genomics
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  - yeast
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+ - transcription-factors
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  - perturbation
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+ - gene-expression
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  - overexpression
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+ - saccharomyces-cerevisiae
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  pretty_name: Hackett, 2020 Overexpression
 
 
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  experimental_conditions:
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  temperature_celsius: 30
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  cultivation_method: chemostat
 
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  - name: time
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  dtype:
63
  class_label:
64
+ names: [0, 2.5, 5, 7.5, 8, 10, 12.5, 15, 18, 20, 30, 45, 60, 90, 100, 120, 180, 290]
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  description: time point (minutes)
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  role: experimental_condition
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  - name: mechanism
 
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  description: >-
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  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
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+ role: sample_id
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  - name: db_id
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+ dtype: float64
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  description: >-
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  an old unique identifer, for use internally only. Deprecated and will be removed eventually.
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  Do not use in analysis. db_id = 0, for GEV and Z3EV, means that those samples are not
 
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  description: >-
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  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
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+ role: sample_id
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  - name: db_id
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+ dtype: float64
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  description: >-
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  an old unique identifer, for use internally only. Deprecated and will be removed eventually.
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  Do not use in analysis. db_id = 0, for GEV and Z3EV, means that those samples are not
 
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  description: >-
228
  unique identifier for a specific sample. The sample ID identifies a unique
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  (regulator_locus_tag, time, mechanism, restriction, date, strain) tuple.
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+ role: sample_id
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  ---
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  # Hackett 2020
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