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CylinderKnMa//Kn1p00//simulation2352_Kn1p00Ma2p1//log.sparta
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| 1 |
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SPARTA (4 Sep 2024)
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Running on 128 MPI task(s)
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| 3 |
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variable BZ equal 1.380649E-23
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| 4 |
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variable PI equal 3.1415926536
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| 5 |
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variable molecular_mass equal 6.63E-26
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| 6 |
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variable molecular_diameter equal 4.17E-10
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| 7 |
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variable gamma equal 1.666666667
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| 8 |
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variable R equal ${BZ}/${molecular_mass}
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| 9 |
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variable R equal 1.380649e-23/${molecular_mass}
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| 10 |
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variable R equal 1.380649e-23/6.63e-26
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| 11 |
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variable L equal 1.0
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| 12 |
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variable xmin equal -5.0
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| 13 |
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variable xmax equal 6.0
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variable ymin equal -5.0
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| 15 |
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variable ymax equal 5.0
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| 16 |
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variable Kn equal 1.0
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| 17 |
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variable Ma equal 2.1
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variable To equal 273.0
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variable Tb equal 273.0
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| 20 |
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variable theta equal 0.0
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| 21 |
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variable mfp equal ${Kn}*${L}
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| 22 |
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variable mfp equal 1*${L}
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| 23 |
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variable mfp equal 1*1
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| 24 |
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variable cpmfp equal 4
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| 25 |
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variable nden equal 1.0/sqrt(2.0)/${PI}/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 26 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 27 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 28 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(${mfp}/${cpmfp}*${Kn})
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| 29 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/${cpmfp}*${Kn})
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| 30 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/4*${Kn})
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| 31 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/4*1)
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| 32 |
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variable sos equal sqrt(${gamma}*${R}*${To})
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variable sos equal sqrt(1.666666667*${R}*${To})
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variable sos equal sqrt(1.666666667*208.242684766214*${To})
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| 35 |
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variable sos equal sqrt(1.666666667*208.242684766214*273)
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| 36 |
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variable vo equal ${Ma}*${sos}
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| 37 |
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variable vo equal 2.1*${sos}
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| 38 |
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variable vo equal 2.1*307.815564238681
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| 39 |
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variable vx equal ${vo}*cos(${theta}*2*PI/360)
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variable vx equal 646.41268490123*cos(${theta}*2*PI/360)
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| 41 |
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variable vx equal 646.41268490123*cos(0*2*PI/360)
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| 42 |
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variable vy equal ${vo}*sin(${theta}*2*PI/360)
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| 43 |
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variable vy equal 646.41268490123*sin(${theta}*2*PI/360)
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| 44 |
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variable vy equal 646.41268490123*sin(0*2*PI/360)
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| 45 |
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variable ppc equal 30
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| 46 |
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variable xncells equal (${xmax}-${xmin})/${mfp}*${cpmfp}
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| 47 |
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variable xncells equal (6-${xmin})/${mfp}*${cpmfp}
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| 48 |
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variable xncells equal (6--5)/${mfp}*${cpmfp}
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variable xncells equal (6--5)/1*${cpmfp}
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variable xncells equal (6--5)/1*4
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variable yncells equal (${ymax}-${ymin})/${mfp}*${cpmfp}
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variable yncells equal (5-${ymin})/${mfp}*${cpmfp}
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| 53 |
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variable yncells equal (5--5)/${mfp}*${cpmfp}
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| 54 |
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variable yncells equal (5--5)/1*${cpmfp}
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| 55 |
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variable yncells equal (5--5)/1*4
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variable Fnum equal ${nden}*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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| 58 |
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variable Fnum equal 5.17753461204666e+18*(6-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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| 59 |
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variable Fnum equal 5.17753461204666e+18*(6--5)*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5-${ymin})/${ppc}/${xncells}/${yncells}
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| 61 |
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/44/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/44/40
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variable tstep equal (-${xmin}+${xmax})/${vx}/${xncells}/10/4
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variable tstep equal (--5+${xmax})/${vx}/${xncells}/10/4
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variable tstep equal (--5+6)/${vx}/${xncells}/10/4
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variable tstep equal (--5+6)/646.41268490123/${xncells}/10/4
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variable tstep equal (--5+6)/646.41268490123/44/10/4
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variable nave equal 10000
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variable noutput equal 300000
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clear
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Running on 128 MPI task(s)
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shell mkdir output
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shell mkdir grid
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shell mkdir surf
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seed 7
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dimension 2
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global nrho ${nden}
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global nrho 5.17753461204666e+18
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global fnum ${Fnum}
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global fnum 1.07865304417639e+16
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timestep ${tstep}
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timestep 9.66874590487806e-06
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| 85 |
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global gridcut 1.0 particle/reorder 100 comm/sort yes
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region 1 cylinder z 0.0 0.0 3.50 -0.5 0.5
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region 2 cylinder z 0.0 0.0 2.00 -0.5 0.5
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region 3 cylinder z 0.0 0.0 0.80 -0.5 0.5
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boundary o o p
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create_box ${xmin} ${xmax} ${ymin} ${ymax} -0.5 0.5
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create_box -5 ${xmax} ${ymin} ${ymax} -0.5 0.5
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create_box -5 6 ${ymin} ${ymax} -0.5 0.5
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create_box -5 6 -5 ${ymax} -0.5 0.5
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create_box -5 6 -5 5 -0.5 0.5
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Created orthogonal box = (-5 -5 -0.5) to (6 5 0.5)
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create_grid ${xncells} ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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create_grid 44 ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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create_grid 44 40 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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Created 8048 child grid cells
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CPU time = 0.0606997 secs
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create/ghost percent = 2.32697 97.673
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balance_grid rcb cell
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Balance grid migrated 8026 cells
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CPU time = 0.0702512 secs
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reassign/sort/migrate/ghost percent = 83.993 0.0368392 9.34608 6.62409
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species gas.species Ar
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mixture air Ar frac 1.0
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mixture air Ar vstream ${vx} ${vy} 0.0 temp ${To}
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mixture air Ar vstream 646.41268490123 ${vy} 0.0 temp ${To}
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mixture air Ar vstream 646.41268490123 0 0.0 temp ${To}
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mixture air Ar vstream 646.41268490123 0 0.0 temp 273
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collide vss air gas.vhs
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collide_modify vremax 100 yes remain no nearcp yes 10
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read_surf cylinder.surf
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200 lines
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-0.5 0.5 xlo xhi
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-0.5 0.5 ylo yhi
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0 0 zlo zhi
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0.0157073 min line length
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132 0 = cells overlapping surfs, overlap cells with unmarked corner pts
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7184 732 132 = cells outside/inside/overlapping surfs
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132 = surf cells with 1,2,etc splits
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109.215 109.215 = cell-wise and global flow volume
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CPU time = 0.127528 secs
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read/check/sort/surf2grid/ghost/inout/particle percent = 39.2079 30.8392 2.10668 23.9536 3.89259 4.77382 0.0608809
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surf2grid time = 0.0305474 secs
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map/comm1/comm2/comm3/comm4/split percent = 9.11318 17.7559 1.66934 1.30532 8.94459 35.9343
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surf_collide 1 diffuse 273.0 1.0
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surf_modify all collide 1
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| 130 |
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fix in emit/face air xlo ylo yhi
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| 131 |
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balance_grid rcb cell
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Balance grid migrated 506 cells
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CPU time = 0.0144728 secs
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reassign/sort/migrate/ghost percent = 16.0318 0.183033 58.9894 24.7958
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create_particles air n 0
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Created 52423 particles
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CPU time = 0.00970091 secs
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stats 10000
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stats_style step cpu np nattempt ncoll nscoll npave nscollave
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run 200000
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Memory usage per proc in Mbytes:
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particles (ave,min,max) = 1.59521 0 1.6875
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grid (ave,min,max) = 1.51379 1.51379 1.51379
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surf (ave,min,max) = 0.0205994 0.0205994 0.0205994
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total (ave,min,max) = 3.12961 1.53439 3.22189
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Step CPU Np Natt Ncoll Nscoll Npave Nscollave
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0 0 52423 0 0 0 0 0
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10000 5.1875333 58525 659 560 3 56878.931 3.2272
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20000 10.889031 58540 624 511 5 57598.085 3.23915
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30000 16.051423 58234 666 549 4 57797.825 3.2378667
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40000 21.056105 58211 621 517 3 57918.756 3.2419
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| 152 |
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50000 25.785233 58060 641 535 5 58003.306 3.24726
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| 153 |
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60000 31.628815 57787 647 531 4 58024.724 3.2474333
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70000 37.217031 58394 655 555 1 58070.916 3.2492286
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80000 42.265214 57972 598 495 4 58108.741 3.2540875
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| 156 |
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90000 47.442975 58211 637 535 2 58118.325 3.2547444
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| 157 |
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100000 52.313411 58342 690 568 3 58131.719 3.2562
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110000 57.3342 58620 634 536 4 58148.746 3.2541364
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120000 62.641932 58164 630 534 4 58167.735 3.253725
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130000 67.913817 58138 637 529 4 58177.462 3.2552615
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140000 72.975469 58184 652 548 3 58181.449 3.25535
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150000 77.911046 58393 642 539 5 58191.16 3.2566267
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160000 82.767437 58396 682 562 1 58195.398 3.25635
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170000 87.647035 57815 654 549 4 58200.176 3.2568647
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180000 93.891381 58333 638 530 4 58207.204 3.2573056
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190000 98.941696 57959 650 550 5 58205.486 3.2582263
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| 167 |
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200000 103.97531 58466 659 541 3 58211.73 3.25816
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Loop time of 103.976 on 128 procs for 200000 steps with 58466 particles
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MPI task timing breakdown:
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Section | min time | avg time | max time |%varavg| %total
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---------------------------------------------------------------
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Move | 0.022444 | 1.4867 | 6.6063 | 138.0 | 1.43
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Coll | 0.057022 | 0.93137 | 3.8653 | 91.3 | 0.90
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| 175 |
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Sort | 0.02571 | 0.19914 | 0.8772 | 48.1 | 0.19
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| 176 |
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Comm | 45.533 | 78.662 | 88.886 | 97.2 | 75.65
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Modify | 0.016759 | 0.055288 | 0.85668 | 51.5 | 0.05
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Output | 0.0036374 | 0.0041852 | 0.0071852 | 1.0 | 0.00
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Other | | 22.64 | | | 21.77
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Particle moves = 11642346024 (11.6B)
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| 182 |
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Cells touched = 12235691399 (12.2B)
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| 183 |
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Particle comms = 80359000 (80.4M)
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| 184 |
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Boundary collides = 0 (0K)
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| 185 |
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Boundary exits = 7939223 (7.94M)
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| 186 |
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SurfColl checks = 34194514 (34.2M)
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| 187 |
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SurfColl occurs = 651632 (0.652M)
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| 188 |
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Surf reactions = 0 (0K)
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| 189 |
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Collide attempts = 134276740 (134M)
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| 190 |
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Collide occurs = 106799580 (107M)
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| 191 |
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Reactions = 0 (0K)
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| 192 |
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Particles stuck = 0
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| 193 |
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Axisymm bad moves = 0
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| 194 |
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Particle-moves/CPUsec/proc: 874780
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| 196 |
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Particle-moves/step: 58211.7
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| 197 |
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Cell-touches/particle/step: 1.05096
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| 198 |
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Particle comm iterations/step: 1
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| 199 |
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Particle fraction communicated: 0.0069023
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Particle fraction colliding with boundary: 0
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| 201 |
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Particle fraction exiting boundary: 0.000681926
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| 202 |
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Surface-checks/particle/step: 0.00293708
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| 203 |
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Surface-collisions/particle/step: 5.59708e-05
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| 204 |
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Surf-reactions/particle/step: 0
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| 205 |
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Collision-attempts/particle/step: 0.0115335
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| 206 |
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Collisions/particle/step: 0.00917337
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| 207 |
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Reactions/particle/step: 0
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| 208 |
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| 209 |
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Particles: 456.766 ave 2229 max 0 min
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| 210 |
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Histogram: 72 16 12 4 2 6 6 4 2 4
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| 211 |
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Cells: 62.875 ave 64 max 62 min
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| 212 |
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Histogram: 17 0 0 0 0 110 0 0 0 1
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| 213 |
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GhostCell: 1715.82 ave 3060 max 124 min
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| 214 |
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Histogram: 18 12 8 12 17 4 7 4 16 30
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EmptyCell: 106.516 ave 174 max 30 min
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| 216 |
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Histogram: 5 5 16 9 14 19 28 19 11 2
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| 217 |
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Surfs: 200 ave 200 max 200 min
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| 218 |
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Histogram: 128 0 0 0 0 0 0 0 0 0
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| 219 |
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GhostSurf: 0 ave 0 max 0 min
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| 220 |
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Histogram: 128 0 0 0 0 0 0 0 0 0
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| 221 |
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compute 1 grid all air n nrho massrho u v w
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| 222 |
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compute 2 grid all air trot
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| 223 |
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compute 3 tvib/grid all air
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| 224 |
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compute 4 thermal/grid all air press temp
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| 225 |
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fix 1 ave/grid all 1 ${nave} ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 226 |
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fix 1 ave/grid all 1 10000 ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 227 |
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fix 1 ave/grid all 1 10000 10000 c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 228 |
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dump 1 grid all ${noutput} output/grid.*.dat id xc yc f_1[*]
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| 229 |
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dump 1 grid all 300000 output/grid.*.dat id xc yc f_1[*]
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| 230 |
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dump_modify 1 format float %12.5g
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| 231 |
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compute 5 surf all air n press px py shx shy fx fy etot erot evib
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| 232 |
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fix 2 ave/surf all 1 ${nave} ${nave} c_5[*] ave running
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| 233 |
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fix 2 ave/surf all 1 10000 ${nave} c_5[*] ave running
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| 234 |
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fix 2 ave/surf all 1 10000 10000 c_5[*] ave running
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| 235 |
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dump 2 surf all ${noutput} output/surf.*.dat id v1x v1y v2x v2y f_2[*]
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| 236 |
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dump 2 surf all 300000 output/surf.*.dat id v1x v1y v2x v2y f_2[*]
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| 237 |
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dump_modify 2 format float %12.5g
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| 238 |
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compute 6 lambda/grid f_1[2] f_1[8] Ar kx
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| 239 |
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dump 3 grid all ${noutput} output/lambdakn.*.dat id xc yc c_6[*]
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| 240 |
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dump 3 grid all 300000 output/lambdakn.*.dat id xc yc c_6[*]
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| 241 |
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dump_modify 3 format float %12.5g
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| 242 |
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run 100000
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| 243 |
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Memory usage per proc in Mbytes:
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| 244 |
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particles (ave,min,max) = 1.6084 0 1.6875
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| 245 |
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grid (ave,min,max) = 1.51379 1.51379 1.51379
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| 246 |
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surf (ave,min,max) = 0.0205994 0.0205994 0.0205994
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| 247 |
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total (ave,min,max) = 3.16416 1.55571 3.24371
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| 248 |
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Step CPU Np Natt Ncoll Nscoll Npave Nscollave
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| 249 |
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200000 0 58466 659 541 0 0 0
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| 250 |
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210000 5.6301757 58226 665 555 4 58259.07 3.2416
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| 251 |
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220000 11.05947 58129 648 538 3 58267.639 3.2448
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| 252 |
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230000 17.059018 57996 656 526 3 58260.335 3.2449667
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| 253 |
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240000 22.514701 58204 651 549 4 58250.49 3.239225
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| 254 |
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250000 28.748595 58707 640 542 3 58251.688 3.24466
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| 255 |
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260000 34.498573 58155 637 518 1 58256.811 3.24825
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| 256 |
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270000 39.970878 58312 632 522 2 58263.153 3.2506143
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| 257 |
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280000 45.644956 58202 644 537 4 58250.975 3.2495375
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| 258 |
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290000 51.954204 58423 630 509 4 58257.091 3.2502556
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| 259 |
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300000 57.648741 58513 646 555 5 58262.184 3.252
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| 260 |
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Loop time of 57.6489 on 128 procs for 100000 steps with 58513 particles
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| 261 |
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| 262 |
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MPI task timing breakdown:
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| 263 |
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Section | min time | avg time | max time |%varavg| %total
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---------------------------------------------------------------
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| 265 |
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Move | 0.011002 | 0.7429 | 3.2872 | 97.1 | 1.29
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| 266 |
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Coll | 0.027322 | 0.46738 | 1.9436 | 64.9 | 0.81
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| 267 |
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Sort | 0.013212 | 0.10077 | 0.44356 | 34.1 | 0.17
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| 268 |
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Comm | 22.691 | 39.143 | 44.395 | 68.7 | 67.90
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| 269 |
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Modify | 0.34704 | 2.0295 | 8.4574 | 150.6 | 3.52
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| 270 |
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Output | 0.019556 | 0.021103 | 0.024643 | 0.8 | 0.04
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| 271 |
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Other | | 15.14 | | | 26.27
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-
|
| 273 |
-
Particle moves = 5826218428 (5.83B)
|
| 274 |
-
Cells touched = 6123032029 (6.12B)
|
| 275 |
-
Particle comms = 40195111 (40.2M)
|
| 276 |
-
Boundary collides = 0 (0K)
|
| 277 |
-
Boundary exits = 3973315 (3.97M)
|
| 278 |
-
SurfColl checks = 17071782 (17.1M)
|
| 279 |
-
SurfColl occurs = 325200 (0.325M)
|
| 280 |
-
Surf reactions = 0 (0K)
|
| 281 |
-
Collide attempts = 67247893 (67.2M)
|
| 282 |
-
Collide occurs = 53488652 (53.5M)
|
| 283 |
-
Reactions = 0 (0K)
|
| 284 |
-
Particles stuck = 0
|
| 285 |
-
Axisymm bad moves = 0
|
| 286 |
-
|
| 287 |
-
Particle-moves/CPUsec/proc: 789561
|
| 288 |
-
Particle-moves/step: 58262.2
|
| 289 |
-
Cell-touches/particle/step: 1.05094
|
| 290 |
-
Particle comm iterations/step: 1
|
| 291 |
-
Particle fraction communicated: 0.00689901
|
| 292 |
-
Particle fraction colliding with boundary: 0
|
| 293 |
-
Particle fraction exiting boundary: 0.000681972
|
| 294 |
-
Surface-checks/particle/step: 0.00293017
|
| 295 |
-
Surface-collisions/particle/step: 5.58167e-05
|
| 296 |
-
Surf-reactions/particle/step: 0
|
| 297 |
-
Collision-attempts/particle/step: 0.0115423
|
| 298 |
-
Collisions/particle/step: 0.00918068
|
| 299 |
-
Reactions/particle/step: 0
|
| 300 |
-
|
| 301 |
-
Particles: 457.133 ave 2250 max 0 min
|
| 302 |
-
Histogram: 74 14 12 4 2 7 5 4 2 4
|
| 303 |
-
Cells: 62.875 ave 64 max 62 min
|
| 304 |
-
Histogram: 17 0 0 0 0 110 0 0 0 1
|
| 305 |
-
GhostCell: 1715.82 ave 3060 max 124 min
|
| 306 |
-
Histogram: 18 12 8 12 17 4 7 4 16 30
|
| 307 |
-
EmptyCell: 106.516 ave 174 max 30 min
|
| 308 |
-
Histogram: 5 5 16 9 14 19 28 19 11 2
|
| 309 |
-
Surfs: 200 ave 200 max 200 min
|
| 310 |
-
Histogram: 128 0 0 0 0 0 0 0 0 0
|
| 311 |
-
GhostSurf: 0 ave 0 max 0 min
|
| 312 |
-
Histogram: 128 0 0 0 0 0 0 0 0 0
|
| 313 |
-
write_grid grid/final-grid.dat
|
| 314 |
-
grid cells = 8048
|
| 315 |
-
CPU time = 0.0018114 secs
|
| 316 |
-
write_surf surf/geom.surf
|
| 317 |
-
surf elements = 200
|
| 318 |
-
CPU time = 0.00160103 secs
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