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CylinderKnMa//Kn1p00//simulation2356_Kn1p00Ma2p5//log.sparta
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| 1 |
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SPARTA (4 Sep 2024)
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| 2 |
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Running on 128 MPI task(s)
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| 3 |
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variable BZ equal 1.380649E-23
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| 4 |
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variable PI equal 3.1415926536
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| 5 |
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variable molecular_mass equal 6.63E-26
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| 6 |
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variable molecular_diameter equal 4.17E-10
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| 7 |
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variable gamma equal 1.666666667
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| 8 |
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variable R equal ${BZ}/${molecular_mass}
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| 9 |
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variable R equal 1.380649e-23/${molecular_mass}
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| 10 |
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variable R equal 1.380649e-23/6.63e-26
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| 11 |
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variable L equal 1.0
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| 12 |
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variable xmin equal -5.0
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variable xmax equal 6.0
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variable ymin equal -5.0
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| 15 |
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variable ymax equal 5.0
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| 16 |
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variable Kn equal 1.0
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| 17 |
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variable Ma equal 2.5
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variable To equal 273.0
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variable Tb equal 273.0
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variable theta equal 0.0
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| 21 |
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variable mfp equal ${Kn}*${L}
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| 22 |
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variable mfp equal 1*${L}
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| 23 |
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variable mfp equal 1*1
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| 24 |
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variable cpmfp equal 4
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| 25 |
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variable nden equal 1.0/sqrt(2.0)/${PI}/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 26 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 27 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
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| 28 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(${mfp}/${cpmfp}*${Kn})
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| 29 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/${cpmfp}*${Kn})
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| 30 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/4*${Kn})
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| 31 |
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variable nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(1/4*1)
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| 32 |
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variable sos equal sqrt(${gamma}*${R}*${To})
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variable sos equal sqrt(1.666666667*${R}*${To})
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variable sos equal sqrt(1.666666667*208.242684766214*${To})
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| 35 |
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variable sos equal sqrt(1.666666667*208.242684766214*273)
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| 36 |
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variable vo equal ${Ma}*${sos}
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| 37 |
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variable vo equal 2.5*${sos}
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| 38 |
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variable vo equal 2.5*307.815564238681
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| 39 |
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variable vx equal ${vo}*cos(${theta}*2*PI/360)
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variable vx equal 769.538910596703*cos(${theta}*2*PI/360)
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| 41 |
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variable vx equal 769.538910596703*cos(0*2*PI/360)
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| 42 |
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variable vy equal ${vo}*sin(${theta}*2*PI/360)
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variable vy equal 769.538910596703*sin(${theta}*2*PI/360)
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| 44 |
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variable vy equal 769.538910596703*sin(0*2*PI/360)
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| 45 |
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variable ppc equal 30
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| 46 |
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variable xncells equal (${xmax}-${xmin})/${mfp}*${cpmfp}
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variable xncells equal (6-${xmin})/${mfp}*${cpmfp}
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| 48 |
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variable xncells equal (6--5)/${mfp}*${cpmfp}
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variable xncells equal (6--5)/1*${cpmfp}
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| 50 |
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variable xncells equal (6--5)/1*4
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variable yncells equal (${ymax}-${ymin})/${mfp}*${cpmfp}
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| 52 |
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variable yncells equal (5-${ymin})/${mfp}*${cpmfp}
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| 53 |
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variable yncells equal (5--5)/${mfp}*${cpmfp}
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| 54 |
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variable yncells equal (5--5)/1*${cpmfp}
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variable yncells equal (5--5)/1*4
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| 56 |
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variable Fnum equal ${nden}*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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| 58 |
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variable Fnum equal 5.17753461204666e+18*(6-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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| 59 |
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variable Fnum equal 5.17753461204666e+18*(6--5)*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5-${ymin})/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/${ppc}/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/${xncells}/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/44/${yncells}
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variable Fnum equal 5.17753461204666e+18*(6--5)*(5--5)/30/44/40
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variable tstep equal (-${xmin}+${xmax})/${vx}/${xncells}/10/4
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variable tstep equal (--5+${xmax})/${vx}/${xncells}/10/4
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| 67 |
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variable tstep equal (--5+6)/${vx}/${xncells}/10/4
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variable tstep equal (--5+6)/769.538910596703/${xncells}/10/4
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variable tstep equal (--5+6)/769.538910596703/44/10/4
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variable nave equal 10000
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variable noutput equal 300000
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clear
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Running on 128 MPI task(s)
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shell mkdir output
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shell mkdir grid
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shell mkdir surf
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seed 7
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dimension 2
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global nrho ${nden}
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global nrho 5.17753461204666e+18
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global fnum ${Fnum}
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global fnum 1.07865304417639e+16
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timestep ${tstep}
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timestep 8.12174656009756e-06
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| 85 |
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global gridcut 1.0 particle/reorder 100 comm/sort yes
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region 1 cylinder z 0.0 0.0 3.50 -0.5 0.5
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region 2 cylinder z 0.0 0.0 2.00 -0.5 0.5
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region 3 cylinder z 0.0 0.0 0.80 -0.5 0.5
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boundary o o p
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create_box ${xmin} ${xmax} ${ymin} ${ymax} -0.5 0.5
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create_box -5 ${xmax} ${ymin} ${ymax} -0.5 0.5
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create_box -5 6 ${ymin} ${ymax} -0.5 0.5
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create_box -5 6 -5 ${ymax} -0.5 0.5
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create_box -5 6 -5 5 -0.5 0.5
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Created orthogonal box = (-5 -5 -0.5) to (6 5 0.5)
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create_grid ${xncells} ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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create_grid 44 ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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create_grid 44 40 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
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Created 8048 child grid cells
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CPU time = 0.0627119 secs
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create/ghost percent = 1.70518 98.2948
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balance_grid rcb cell
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Balance grid migrated 8026 cells
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CPU time = 0.0714 secs
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reassign/sort/migrate/ghost percent = 84.332 0.0339215 9.25928 6.37483
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species gas.species Ar
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mixture air Ar frac 1.0
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mixture air Ar vstream ${vx} ${vy} 0.0 temp ${To}
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mixture air Ar vstream 769.538910596703 ${vy} 0.0 temp ${To}
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mixture air Ar vstream 769.538910596703 0 0.0 temp ${To}
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mixture air Ar vstream 769.538910596703 0 0.0 temp 273
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collide vss air gas.vhs
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collide_modify vremax 100 yes remain no nearcp yes 10
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read_surf cylinder.surf
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200 lines
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-0.5 0.5 xlo xhi
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-0.5 0.5 ylo yhi
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0 0 zlo zhi
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0.0157073 min line length
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132 0 = cells overlapping surfs, overlap cells with unmarked corner pts
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7184 732 132 = cells outside/inside/overlapping surfs
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132 = surf cells with 1,2,etc splits
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109.215 109.215 = cell-wise and global flow volume
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CPU time = 0.103255 secs
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read/check/sort/surf2grid/ghost/inout/particle percent = 32.8745 38.6403 2.54503 21.0441 4.89609 5.53523 0.075918
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surf2grid time = 0.021729 secs
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map/comm1/comm2/comm3/comm4/split percent = 12.9649 26.04 2.28646 1.82648 12.8392 7.27118
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surf_collide 1 diffuse 273.0 1.0
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surf_modify all collide 1
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| 130 |
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fix in emit/face air xlo ylo yhi
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| 131 |
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balance_grid rcb cell
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Balance grid migrated 506 cells
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CPU time = 0.015066 secs
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reassign/sort/migrate/ghost percent = 18.5256 0.177552 58.4464 22.8504
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create_particles air n 0
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Created 52423 particles
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CPU time = 0.00936401 secs
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stats 10000
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stats_style step cpu np nattempt ncoll nscoll npave nscollave
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run 200000
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Memory usage per proc in Mbytes:
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particles (ave,min,max) = 1.59521 0 1.6875
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grid (ave,min,max) = 1.51379 1.51379 1.51379
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surf (ave,min,max) = 0.0205994 0.0205994 0.0205994
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total (ave,min,max) = 3.12961 1.53439 3.22189
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Step CPU Np Natt Ncoll Nscoll Npave Nscollave
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0 0 52423 0 0 0 0 0
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10000 6.003215 58747 547 457 6 57284.935 3.4297
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20000 10.640105 58675 521 440 4 58024.151 3.46275
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| 150 |
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30000 15.567376 58534 574 490 5 58217.122 3.4542667
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40000 21.266546 58811 583 496 5 58323.361 3.462525
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| 152 |
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50000 26.141431 58325 562 466 6 58379.923 3.45614
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| 153 |
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60000 30.770502 58699 555 453 5 58402.419 3.4619667
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70000 36.780374 58740 527 450 2 58451.616 3.4666143
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80000 41.478008 58695 553 467 2 58487.731 3.469075
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| 156 |
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90000 46.403216 58583 517 429 1 58509.888 3.4664222
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| 157 |
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100000 51.445067 58641 548 459 2 58516.331 3.46394
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110000 56.34493 58621 530 456 3 58526.522 3.4666727
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120000 60.991147 58686 534 460 3 58546.191 3.4649667
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130000 66.894062 58906 546 456 2 58562.882 3.4648462
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140000 71.488696 58514 515 437 1 58566.164 3.4639571
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150000 76.350175 58660 520 438 4 58574.254 3.46362
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160000 81.37781 58373 518 436 2 58581.352 3.4643437
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170000 86.882929 58653 553 470 4 58591.304 3.4645647
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180000 91.913631 58643 553 458 2 58601.086 3.4635556
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| 166 |
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190000 97.507358 58392 547 477 6 58599.983 3.4610211
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200000 102.16257 58806 547 471 6 58605.418 3.46083
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Loop time of 102.163 on 128 procs for 200000 steps with 58806 particles
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MPI task timing breakdown:
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Section | min time | avg time | max time |%varavg| %total
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---------------------------------------------------------------
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Move | 0.022343 | 1.4894 | 7.2597 | 140.8 | 1.46
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Coll | 0.056207 | 0.88822 | 3.9379 | 89.5 | 0.87
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Sort | 0.026059 | 0.2005 | 0.94033 | 48.8 | 0.20
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| 176 |
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Comm | 44.773 | 77.399 | 87.373 | 97.8 | 75.76
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Modify | 0.017243 | 0.055534 | 0.85519 | 52.5 | 0.05
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Output | 0.0043738 | 0.0050951 | 0.009068 | 1.0 | 0.00
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Other | | 22.13 | | | 21.66
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Particle moves = 11721083669 (11.7B)
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| 182 |
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Cells touched = 12296905060 (12.3B)
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| 183 |
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Particle comms = 78285306 (78.3M)
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| 184 |
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Boundary collides = 0 (0K)
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| 185 |
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Boundary exits = 7624480 (7.62M)
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| 186 |
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SurfColl checks = 40655162 (40.7M)
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| 187 |
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SurfColl occurs = 692166 (0.692M)
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| 188 |
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Surf reactions = 0 (0K)
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| 189 |
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Collide attempts = 115862616 (116M)
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| 190 |
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Collide occurs = 92752942 (92.8M)
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| 191 |
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Reactions = 0 (0K)
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| 192 |
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Particles stuck = 0
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| 193 |
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Axisymm bad moves = 0
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Particle-moves/CPUsec/proc: 896322
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| 196 |
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Particle-moves/step: 58605.4
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| 197 |
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Cell-touches/particle/step: 1.04913
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| 198 |
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Particle comm iterations/step: 1
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| 199 |
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Particle fraction communicated: 0.00667902
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| 200 |
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Particle fraction colliding with boundary: 0
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| 201 |
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Particle fraction exiting boundary: 0.000650493
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| 202 |
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Surface-checks/particle/step: 0.00346855
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| 203 |
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Surface-collisions/particle/step: 5.90531e-05
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| 204 |
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Surf-reactions/particle/step: 0
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| 205 |
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Collision-attempts/particle/step: 0.00988497
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| 206 |
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Collisions/particle/step: 0.00791334
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| 207 |
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Reactions/particle/step: 0
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| 208 |
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| 209 |
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Particles: 459.422 ave 2466 max 0 min
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Histogram: 78 14 10 4 4 7 3 4 0 4
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Cells: 62.875 ave 64 max 62 min
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| 212 |
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Histogram: 17 0 0 0 0 110 0 0 0 1
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| 213 |
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GhostCell: 1715.82 ave 3060 max 124 min
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| 214 |
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Histogram: 18 12 8 12 17 4 7 4 16 30
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| 215 |
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EmptyCell: 106.516 ave 174 max 30 min
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| 216 |
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Histogram: 5 5 16 9 14 19 28 19 11 2
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| 217 |
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Surfs: 200 ave 200 max 200 min
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| 218 |
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Histogram: 128 0 0 0 0 0 0 0 0 0
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| 219 |
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GhostSurf: 0 ave 0 max 0 min
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| 220 |
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Histogram: 128 0 0 0 0 0 0 0 0 0
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| 221 |
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compute 1 grid all air n nrho massrho u v w
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| 222 |
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compute 2 grid all air trot
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| 223 |
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compute 3 tvib/grid all air
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| 224 |
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compute 4 thermal/grid all air press temp
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| 225 |
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fix 1 ave/grid all 1 ${nave} ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 226 |
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fix 1 ave/grid all 1 10000 ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 227 |
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fix 1 ave/grid all 1 10000 10000 c_1[*] c_4[*] c_2[*] c_3[*] ave running
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| 228 |
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dump 1 grid all ${noutput} output/grid.*.dat id xc yc f_1[*]
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| 229 |
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dump 1 grid all 300000 output/grid.*.dat id xc yc f_1[*]
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| 230 |
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dump_modify 1 format float %12.5g
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| 231 |
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compute 5 surf all air n press px py shx shy fx fy etot erot evib
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| 232 |
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fix 2 ave/surf all 1 ${nave} ${nave} c_5[*] ave running
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| 233 |
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fix 2 ave/surf all 1 10000 ${nave} c_5[*] ave running
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| 234 |
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fix 2 ave/surf all 1 10000 10000 c_5[*] ave running
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| 235 |
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dump 2 surf all ${noutput} output/surf.*.dat id v1x v1y v2x v2y f_2[*]
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| 236 |
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dump 2 surf all 300000 output/surf.*.dat id v1x v1y v2x v2y f_2[*]
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| 237 |
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dump_modify 2 format float %12.5g
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| 238 |
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compute 6 lambda/grid f_1[2] f_1[8] Ar kx
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| 239 |
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dump 3 grid all ${noutput} output/lambdakn.*.dat id xc yc c_6[*]
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| 240 |
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dump 3 grid all 300000 output/lambdakn.*.dat id xc yc c_6[*]
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| 241 |
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dump_modify 3 format float %12.5g
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| 242 |
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run 100000
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| 243 |
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Memory usage per proc in Mbytes:
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| 244 |
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particles (ave,min,max) = 1.6084 0 1.6875
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| 245 |
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grid (ave,min,max) = 1.51379 1.51379 1.51379
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| 246 |
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surf (ave,min,max) = 0.0205994 0.0205994 0.0205994
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| 247 |
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total (ave,min,max) = 3.16416 1.55571 3.24371
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| 248 |
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Step CPU Np Natt Ncoll Nscoll Npave Nscollave
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| 249 |
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200000 0 58806 547 471 0 0 0
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| 250 |
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210000 5.6182756 58591 567 479 4 58793.111 3.4793
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| 251 |
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220000 11.30115 58568 576 497 4 58749.983 3.4867
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| 252 |
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230000 16.882213 58419 570 478 1 58702.58 3.4707
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| 253 |
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240000 23.664103 58795 506 416 3 58676.503 3.4579
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| 254 |
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250000 28.994512 58704 588 501 3 58681.537 3.45704
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| 255 |
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260000 34.558835 58802 558 470 1 58679.292 3.4594667
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| 256 |
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270000 40.318844 58468 565 471 2 58690.753 3.4583
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| 257 |
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280000 46.470341 58802 512 428 1 58678.551 3.459525
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| 258 |
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290000 53.112049 58415 532 437 4 58679.523 3.4605778
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| 259 |
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300000 58.506072 58766 540 446 2 58680.769 3.4619
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| 260 |
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Loop time of 58.5063 on 128 procs for 100000 steps with 58766 particles
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| 261 |
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| 262 |
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MPI task timing breakdown:
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| 263 |
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Section | min time | avg time | max time |%varavg| %total
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| 264 |
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---------------------------------------------------------------
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| 265 |
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Move | 0.011091 | 0.74715 | 3.6236 | 99.3 | 1.28
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| 266 |
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Coll | 0.027311 | 0.44632 | 1.9834 | 63.3 | 0.76
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| 267 |
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Sort | 0.013546 | 0.10104 | 0.47511 | 34.5 | 0.17
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| 268 |
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Comm | 22.533 | 39.045 | 44.348 | 70.5 | 66.74
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| 269 |
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Modify | 0.36197 | 2.0644 | 9.1179 | 152.5 | 3.53
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| 270 |
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Output | 0.019243 | 0.034461 | 0.043278 | 4.8 | 0.06
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| 271 |
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Other | | 16.07 | | | 27.46
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-
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Particle moves = 5868076854 (5.87B)
|
| 274 |
-
Cells touched = 6156243091 (6.16B)
|
| 275 |
-
Particle comms = 39172667 (39.2M)
|
| 276 |
-
Boundary collides = 0 (0K)
|
| 277 |
-
Boundary exits = 3815338 (3.82M)
|
| 278 |
-
SurfColl checks = 20293887 (20.3M)
|
| 279 |
-
SurfColl occurs = 346190 (0.346M)
|
| 280 |
-
Surf reactions = 0 (0K)
|
| 281 |
-
Collide attempts = 58091907 (58.1M)
|
| 282 |
-
Collide occurs = 46519004 (46.5M)
|
| 283 |
-
Reactions = 0 (0K)
|
| 284 |
-
Particles stuck = 0
|
| 285 |
-
Axisymm bad moves = 0
|
| 286 |
-
|
| 287 |
-
Particle-moves/CPUsec/proc: 783580
|
| 288 |
-
Particle-moves/step: 58680.8
|
| 289 |
-
Cell-touches/particle/step: 1.04911
|
| 290 |
-
Particle comm iterations/step: 1
|
| 291 |
-
Particle fraction communicated: 0.00667555
|
| 292 |
-
Particle fraction colliding with boundary: 0
|
| 293 |
-
Particle fraction exiting boundary: 0.000650185
|
| 294 |
-
Surface-checks/particle/step: 0.00345835
|
| 295 |
-
Surface-collisions/particle/step: 5.89955e-05
|
| 296 |
-
Surf-reactions/particle/step: 0
|
| 297 |
-
Collision-attempts/particle/step: 0.00989965
|
| 298 |
-
Collisions/particle/step: 0.00792747
|
| 299 |
-
Reactions/particle/step: 0
|
| 300 |
-
|
| 301 |
-
Particles: 459.109 ave 2414 max 0 min
|
| 302 |
-
Histogram: 78 13 12 2 3 7 3 6 0 4
|
| 303 |
-
Cells: 62.875 ave 64 max 62 min
|
| 304 |
-
Histogram: 17 0 0 0 0 110 0 0 0 1
|
| 305 |
-
GhostCell: 1715.82 ave 3060 max 124 min
|
| 306 |
-
Histogram: 18 12 8 12 17 4 7 4 16 30
|
| 307 |
-
EmptyCell: 106.516 ave 174 max 30 min
|
| 308 |
-
Histogram: 5 5 16 9 14 19 28 19 11 2
|
| 309 |
-
Surfs: 200 ave 200 max 200 min
|
| 310 |
-
Histogram: 128 0 0 0 0 0 0 0 0 0
|
| 311 |
-
GhostSurf: 0 ave 0 max 0 min
|
| 312 |
-
Histogram: 128 0 0 0 0 0 0 0 0 0
|
| 313 |
-
write_grid grid/final-grid.dat
|
| 314 |
-
grid cells = 8048
|
| 315 |
-
CPU time = 0.00179314 secs
|
| 316 |
-
write_surf surf/geom.surf
|
| 317 |
-
surf elements = 200
|
| 318 |
-
CPU time = 0.00188155 secs
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