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SNOOPPI

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Update positive, negative, and unknown splits

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  1. README.md +187 -0
  2. data/unknown-00000-of-00005.parquet +2 -2
  3. data/unknown-00001-of-00005.parquet +2 -2
  4. data/unknown-00002-of-00005.parquet +2 -2
  5. data/unknown-00003-of-00005.parquet +2 -2
  6. data/unknown-00004-of-00005.parquet +2 -2
README.md CHANGED
@@ -1,3 +1,190 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  # SNOOPPI: Sequence-Normalized Database of On- and Off-Target Protein-Protein Interactions
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  SNOOPPI is a curated protein–protein interaction (PPI) dataset containing positive, negative, and unknown interaction annotations.
 
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+ ---
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: positive
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+ path: data/positive-*
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+ - split: negative
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+ path: data/negative-*
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+ - split: unknown
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+ path: data/unknown-*
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+ dataset_info:
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+ features:
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+ - name: SNOOPPI_final_label
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+ dtype: string
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+ - name: MI0915_final_label
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+ dtype: string
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+ - name: SNOOPPI_Partner_A_ID
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+ dtype: string
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+ - name: SNOOPPI_Partner_B_ID
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+ dtype: string
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+ - name: SNOOPPI_Pair_ID
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+ dtype: string
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+ - name: SNOOPPI_Labeled_Pair_ID
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+ dtype: string
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+ - name: seq_sort
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+ dtype: string
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+ - name: unique_interaction_mi_terms
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+ dtype: string
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+ - name: partner_A_sequence
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+ dtype: string
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+ - name: partner_B_sequence
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+ dtype: string
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+ - name: partner_A_length
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+ dtype: string
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+ - name: partner_B_length
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+ dtype: string
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+ - name: partner_A_mol_type
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+ dtype: string
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+ - name: partner_B_mol_type
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+ dtype: string
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+ - name: intact_interaction_ids
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+ dtype: string
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+ - name: n_intact_interaction_ids
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+ dtype: string
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+ - name: partner_A_intact_interactor_ids
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+ dtype: string
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+ - name: partner_B_intact_interactor_ids
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+ dtype: string
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+ - name: partner_A_n_intact_interactor_ids
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+ dtype: string
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+ - name: partner_B_n_intact_interactor_ids
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+ dtype: string
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+ - name: partner_A_uniprot_ids
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+ dtype: string
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+ - name: partner_B_uniprot_ids
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+ dtype: string
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+ - name: partner_A_gene_names
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+ dtype: string
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+ - name: partner_B_gene_names
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+ dtype: string
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+ - name: partner_A_species
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+ dtype: string
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+ - name: partner_B_species
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+ dtype: string
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+ - name: mi_scores_all
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+ dtype: string
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+ - name: mi_score_mean
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+ dtype: string
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+ - name: mi_score_min
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+ dtype: string
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+ - name: mi_score_max
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+ dtype: string
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+ - name: assays_unique
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+ dtype: string
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+ - name: n_assays_unique
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+ dtype: string
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+ - name: n_papers
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+ dtype: string
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+ - name: pubmed_ids
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+ dtype: string
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+ - name: publication_years_all
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+ dtype: string
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+ - name: publication_year_min
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+ dtype: string
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+ - name: publication_year_max
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+ dtype: string
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+ - name: feature_relationship_types
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+ dtype: string
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+ - name: feature_relationship_summary
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+ dtype: string
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+ - name: has_mutation_relationship
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+ dtype: string
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+ - name: has_ptm_relationship
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+ dtype: string
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+ - name: has_binding_site_relationship
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+ dtype: string
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+ - name: partner_A_wildtype_sequence_if_feature_modified
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+ dtype: string
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+ - name: partner_B_wildtype_sequence_if_feature_modified
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+ dtype: string
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+ - name: wildtype_seq_sort_if_feature_modified
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+ dtype: string
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+ - name: wildtype_SNOOPPI_final_label
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+ dtype: string
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+ - name: wildtype_MI0915_final_label
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+ dtype: string
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+ - name: exact_sequence_pair_intact_label_summary
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+ dtype: string
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+ - name: snooppi_label_transition_from_intact
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+ dtype: string
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+ - name: seq_sort_origin_categories
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+ dtype: string
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+ - name: unique_expansions
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+ dtype: string
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+ - name: partner_A_go_terms
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+ dtype: string
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+ - name: partner_B_go_terms
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+ dtype: string
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+ - name: partner_A_dip
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+ dtype: string
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+ - name: partner_B_dip
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+ dtype: string
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+ - name: partner_A_ensg
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+ dtype: string
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+ - name: partner_B_ensg
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+ dtype: string
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+ - name: partner_A_ense
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+ dtype: string
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+ - name: partner_B_ense
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+ dtype: string
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+ - name: partner_A_enst
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+ dtype: string
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+ - name: partner_B_enst
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+ dtype: string
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+ - name: partner_A_interpro
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+ dtype: string
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+ - name: partner_B_interpro
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+ dtype: string
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+ - name: partner_A_rcsb_pdb
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+ dtype: string
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+ - name: partner_B_rcsb_pdb
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+ dtype: string
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+ - name: partner_A_reactome
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+ dtype: string
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+ - name: partner_B_reactome
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+ dtype: string
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+ - name: partner_A_host_context
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+ dtype: string
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+ - name: partner_B_host_context
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+ dtype: string
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+ - name: partner_A_sequence_snooppi_degree_by_label
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+ dtype: string
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+ - name: partner_B_sequence_snooppi_degree_by_label
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+ dtype: string
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+ - name: partner_A_sequence_modified_role_counts
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+ dtype: string
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+ - name: partner_B_sequence_modified_role_counts
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+ dtype: string
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+ - name: partner_A_sequence_partner_modified_role_counts
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+ dtype: string
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+ - name: partner_B_sequence_partner_modified_role_counts
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+ dtype: string
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+ - name: partner_A_gene_snooppi_degree_by_label
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+ dtype: string
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+ - name: partner_B_gene_snooppi_degree_by_label
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+ dtype: string
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+ - name: partner_A_gene_modified_role_counts
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+ dtype: string
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+ - name: partner_B_gene_modified_role_counts
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+ dtype: string
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+ - name: partner_A_gene_partner_modified_role_counts
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+ dtype: string
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+ - name: partner_B_gene_partner_modified_role_counts
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+ dtype: string
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+ splits:
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+ - name: positive
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+ num_bytes: 153392772
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+ num_examples: 33625
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+ - name: negative
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+ num_bytes: 34725795
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+ num_examples: 5378
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+ - name: unknown
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+ num_bytes: 4633269465
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+ num_examples: 835083
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+ download_size: 1457344515
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+ dataset_size: 4821388032
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+ ---
188
  # SNOOPPI: Sequence-Normalized Database of On- and Off-Target Protein-Protein Interactions
189
 
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  SNOOPPI is a curated protein–protein interaction (PPI) dataset containing positive, negative, and unknown interaction annotations.
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