Hugging Face's logo

Datasets:
Cloufield
/
GWASLab-Reference

Tasks:
Other
Modalities:
Text
Formats:
text
Size:
100M - 1B
Tags:
gwas
genomics
1000-genomes
hapmap
ld-reference
allele-frequency
Libraries:
Datasets
License:
Dataset card Data Studio Files
xet
 Community
1
Cloufield commited on
Commit
204c2df
·
verified ·
1 Parent(s): 7fd6251

Add 1KG LD reference VCFs and tabix indexes (hg19 and hg38)

Browse files
Files changed (27) hide show
  1. .gitattributes +12 -0
  2. 1kg/hg19/AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  3. 1kg/hg19/AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  4. 1kg/hg19/AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  5. 1kg/hg19/AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  6. 1kg/hg19/EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  7. 1kg/hg19/EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  8. 1kg/hg19/EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  9. 1kg/hg19/EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  10. 1kg/hg19/PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  11. 1kg/hg19/PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  12. 1kg/hg19/SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz +3 -0
  13. 1kg/hg19/SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi +3 -0
  14. 1kg/hg19/md5sum.txt +6 -0
  15. 1kg/hg38/AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  16. 1kg/hg38/AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  17. 1kg/hg38/AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  18. 1kg/hg38/AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  19. 1kg/hg38/EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  20. 1kg/hg38/EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  21. 1kg/hg38/EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  22. 1kg/hg38/EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  23. 1kg/hg38/PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  24. 1kg/hg38/PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  25. 1kg/hg38/SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz +3 -0
  26. 1kg/hg38/SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi +3 -0
  27. 1kg/hg38/md5sum.txt +6 -0
.gitattributes CHANGED
@@ -58,3 +58,15 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
58
  # Video files - compressed
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
58
  # Video files - compressed
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
61
+ 1kg/hg19/AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
62
+ 1kg/hg19/AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
63
+ 1kg/hg19/EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
64
+ 1kg/hg19/EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
65
+ 1kg/hg19/PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
66
+ 1kg/hg19/SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
67
+ 1kg/hg38/AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
68
+ 1kg/hg38/AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
69
+ 1kg/hg38/EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
70
+ 1kg/hg38/EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
71
+ 1kg/hg38/PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
72
+ 1kg/hg38/SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
1kg/hg19/AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1f220b36dcb275c45c127f0565c5fa0be63b56499734185ac7ff952b78bf250a
3
+ size 5342011614
1kg/hg19/AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c46364ea2fd82efd48a174c03eba2107b46aeab9cc1364abd449fdd3dd181b5c
3
+ size 2525410
1kg/hg19/AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fe58e5e30dff4aba346317a8e28eb730fefcd1e2036eabafcaab9e79efa38efd
3
+ size 2703516031
1kg/hg19/AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5322b69d05c1c53128f446d96d77544240cadf4352d32950519fa78ce671e705
3
+ size 2413831
1kg/hg19/EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b02359eb95c57867211208fe7c08b8ba04cf472208b6296d8a21587fe011d9b7
3
+ size 3324946936
1kg/hg19/EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:493719bd514f7b80bbcb2018b8adb389bc1c6d534617c1026002b3bc523699d5
3
+ size 2446525
1kg/hg19/EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1d14cca81da713de4c204703a3fe81f766a7bf85ffe15f878e0655b1a83ae96c
3
+ size 3469239002
1kg/hg19/EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d7d6ac1180f91c1e52c5318beca41d40c145723b5a9ea117fc74383576c8d3ea
3
+ size 2450930
1kg/hg19/PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e57d2fe37e6970d1457e109c8aab9166f1c2ddd95075a22adfd1cea2c5484122
3
+ size 14671487684
1kg/hg19/PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ca13243bd626e9b8de0bb3929520bbe2addbdd1708f1dde970a39c9e1dbd2ef7
3
+ size 2584845
1kg/hg19/SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8739c44ee2792d503de115ef3351c0b515cea2572df7a77e3f65e03645b0a671
3
+ size 3462387900
1kg/hg19/SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3a09b2c73c27a51c2c7ec2ddfd46df8aed8301c7ee1ea11c5dffaab9d92d0d91
3
+ size 2454626
1kg/hg19/md5sum.txt ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ b486381ac2e475381e8184b2c7c165e4 ./AFR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
2
+ f9daa2144063c327006e4cffcae21510 ./AMR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
3
+ 6162a93cb80935168c0bfa519748b054 ./EAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
4
+ 2c78cb84cb1f90b576510decc45e5b9b ./EUR.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
5
+ 8f9eca55f9fc25e2a58a013a1ae0a9af ./PAN.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
6
+ fdf1c9831d74ae8e9c3960865cf7c22c ./SAS.ALL.split_norm_af.1kgp3v5.hg19.vcf.gz
1kg/hg38/AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0bb52d254799767d697c06f3ecc2b03c0aed391b3f0a3c0312a747f034d76386
3
+ size 5344706993
1kg/hg38/AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3ce5526d1417aefe1d93c5dff4e101889b876e26621d13b9c9cc167a95a6385c
3
+ size 2513023
1kg/hg38/AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0561ed4b58eed59e638fd1095dc488200e7c8ced5ae416a0d08261773c751579
3
+ size 2611934457
1kg/hg38/AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bdfbba1a09d9d7841c83653126a99ffa2ca2791afb6915a05337374ded424a20
3
+ size 2399464
1kg/hg38/EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:11ed4ec0d82a72c9801afc136a2b902fddf6e8445f7df37a2cef8393e8f76247
3
+ size 3201288103
1kg/hg38/EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ea6c8bfbb39d0977eaddfc3b0fbb0ebca0c49052d748c89a29ee935026832825
3
+ size 2429600
1kg/hg38/EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a9bc295786f2637935097523ffcfda4d6dff02d9f928e72942bab1c42183450a
3
+ size 3350852209
1kg/hg38/EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ecc0d782efec6a8a886565f6b2d7ce9c698f14860e1e73f113fb9a269c17383f
3
+ size 2433201
1kg/hg38/PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7782a9937a311600b76d186cd231f735910b3a251a6db459e4ff9269b300d0de
3
+ size 14661061884
1kg/hg38/PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:54b0acd095a9a52f182a371b4ab8dd00263a020d444a26a6f0ac1218573e78b3
3
+ size 2659948
1kg/hg38/SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:08f0d5bf981a778ed0d923ea4b01e02c52e793d0951b8a2824dba36fca401524
3
+ size 3348750594
1kg/hg38/SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz.tbi ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4672f7dd9022d31ae86b164d33fce42cc5c651f82c86c62be4a3a3d68db8cc0f
3
+ size 2435258
1kg/hg38/md5sum.txt ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ f1e0657ee7549915e5bde2f6324b0e57 ./AFR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz
2
+ f4109fc1e23c0eb62762caaf4bed24d5 ./AMR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz
3
+ 5360451ef7f31cb44471144e427e6cfe ./EAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz
4
+ 9e1aa56d8b843fef724b67e23932c95b ./EUR.ALL.split_norm_af.1kg_30x.hg38.vcf.gz
5
+ 32e160c40d5463befff35ab6e1310349 ./PAN.ALL.split_norm_af.1kg_30x.hg38.vcf.gz
6
+ 59fbbf0f30a7ad2f13a04b035e5dc373 ./SAS.ALL.split_norm_af.1kg_30x.hg38.vcf.gz