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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| """HermeneuticDive v3.0.0 — provenance / reproduction script. | |
| Rebuilds data/<config>/<split>-*.parquet from the raw JSONL inputs in this | |
| repository, recomputes stats.json, and verifies build invariants: | |
| - qa_sft and qa_rl question sets are disjoint (no SFT/RL overlap) | |
| - message turns carry tool_call_id on every tool result, each referencing an | |
| earlier assistant tool call | |
| - trajectories and DPO pairs inherit their question's split | |
| - row counts match stats.json | |
| The decontamination hook now implements CONTAINMENT metrics (v2; replaces the | |
| v1 Jaccard-over-concatenated-fields check the audit found too dilute): | |
| 1. substring containment (normalised, >= 20 chars, either direction) | |
| 2. token-set containment >= 0.75 (stopwords removed, >= 6 tokens per side) | |
| 3. character-shingle (n=5) Jaccard >= 0.5 | |
| Usage: | |
| python create_dataset.py # rebuild parquet + stats | |
| python create_dataset.py --decontaminate benchmarks_dir_or.jsonl | |
| benchmarks: one JSON per line with a "question" field (or any text fields), | |
| or a directory of such .jsonl files. The release was checked against | |
| 7,900 questions from HotpotQA, 2WikiMultihopQA, MuSiQue and TriviaQA | |
| (fetched 2026-11-12 in v2; INHERITED, not re-run in v3 — see decontamination_report.json). | |
| Author pipeline: HermeneuticDive maintainers (independent project; | |
| LLM-assisted authoring under human direction). NOT affiliated with Z.ai or | |
| the original DeepDive authors. | |
| License: CC0-1.0 for all authored content (see LICENSE and README: Licensing). | |
| """ | |
| import argparse, json, re, sys, unicodedata | |
| from pathlib import Path | |
| from collections import defaultdict | |
| import pyarrow as pa | |
| import pyarrow.parquet as pq | |
| HERE = Path(__file__).parent | |
| CONFIGS = ["qa_sft", "qa_rl", "trajectories_sft", "dpo", "dpo_matched"] | |
| RAW_OF = {"qa_sft": "qa_sft_raw.jsonl", "qa_rl": "qa_rl_raw.jsonl", | |
| "trajectories_sft": "trajectories_raw.jsonl", "dpo": "dpo_raw.jsonl", | |
| "dpo_matched": "dpo_matched_raw.jsonl"} | |
| SPLITS = ["train", "validation", "test"] | |
| TYPE_MAP = {"string": pa.string(), "int32": pa.int32(), "float64": pa.float64(), | |
| "bool": pa.bool_(), "int64": pa.int64()} | |
| def spec_to_arrow(spec): | |
| t = spec.get("_type") | |
| if t == "Value": | |
| return TYPE_MAP[spec["dtype"]] | |
| if t == "List": | |
| return pa.list_(spec_to_arrow(spec["feature"])) | |
| if t == "struct": | |
| return pa.struct([(k, spec_to_arrow(v)) for k, v in spec["fields"].items()]) | |
| raise ValueError(f"unsupported spec: {spec}") | |
| def schema_for(features_json): | |
| return pa.schema([(name, spec_to_arrow(spec)) for name, spec in features_json.items()]) | |
| def load_rows(cfg): | |
| return [json.loads(l) for l in (HERE / RAW_OF[cfg]).read_text(encoding="utf-8").splitlines()] | |
| def clean(row, schema): | |
| return {name: row.get(name) for name in schema.names} | |
| def rebuild(): | |
| stats = {} | |
| for cfg in CONFIGS: | |
| rows = load_rows(cfg) | |
| features_json = json.loads((HERE / f"features_{cfg}.json").read_text()) | |
| schema = schema_for(features_json) | |
| out_dir = HERE / "data" / cfg | |
| out_dir.mkdir(parents=True, exist_ok=True) | |
| by_split = defaultdict(list) | |
| for r in rows: | |
| by_split[r["split"]].append(clean(r, schema)) | |
| cfg_stats = {} | |
| for split in SPLITS: | |
| srows = by_split.get(split, []) | |
| table = pa.Table.from_pylist(srows, schema=schema) | |
| path = out_dir / f"{split}-00000-of-00001.parquet" | |
| pq.write_table(table, path) | |
| cfg_stats[split] = {"num_examples": len(srows), | |
| "num_bytes": table.nbytes, | |
| "download_size": path.stat().st_size, | |
| "shards": [path.name]} | |
| print(f"{cfg}/{split}: {len(srows)} rows -> {path.name}") | |
| stats[cfg] = { | |
| "splits": cfg_stats, | |
| "download_size": sum(s["download_size"] for s in cfg_stats.values()), | |
| "dataset_size": sum(s["num_bytes"] for s in cfg_stats.values()), | |
| "num_examples": sum(s["num_examples"] for s in cfg_stats.values()), | |
| } | |
| (HERE / "stats.json").write_text(json.dumps(stats, indent=2, ensure_ascii=False)) | |
| verify(stats) | |
| print("stats.json written; invariants verified.") | |
| def verify(stats): | |
| # v2: SFT and RL pools disjoint | |
| sft_ids = {r["id"] for r in load_rows("qa_sft")} | |
| rl_ids = {r["id"] for r in load_rows("qa_rl")} | |
| assert not (sft_ids & rl_ids), f"SFT/RL question overlap: {sorted(sft_ids & rl_ids)[:5]}" | |
| # split integrity: a question id lives in exactly one split across configs | |
| split_of = {} | |
| for cfg in ["qa_sft", "qa_rl"]: | |
| for r in load_rows(cfg): | |
| if r["id"] in split_of: | |
| assert split_of[r["id"]] == r["split"], f"split leakage: {r['id']}" | |
| split_of[r["id"]] = r["split"] | |
| # trajectories + dpo inherit their question's split (question must be in qa_sft) | |
| qa = {r["id"]: r["split"] for r in load_rows("qa_sft")} | |
| for t in load_rows("trajectories_sft"): | |
| assert t["qa_id"] in qa, f"trajectory references non-SFT question: {t['qa_id']}" | |
| assert t["split"] == qa[t["qa_id"]], f"trajectory split mismatch: {t['id']}" | |
| for cfg_ in ("dpo", "dpo_matched"): | |
| for d in load_rows(cfg_): | |
| assert d["qa_id"] in qa, f"{cfg_} references non-SFT question: {d['qa_id']}" | |
| assert d["split"] == qa[d["qa_id"]], f"{cfg_} split mismatch: {d['id']}" | |
| # v2: tool_call_id integrity in every message list of every config | |
| def check_messages(msgs, ctx): | |
| for i, t in enumerate(msgs): | |
| if t.get("role") == "tool": | |
| assert t.get("tool_call_id"), f"{ctx}: tool turn without tool_call_id" | |
| ids = {c["id"] for tt in msgs[:i] if tt.get("role") == "assistant" | |
| for c in tt.get("tool_calls") or []} | |
| assert t["tool_call_id"] in ids, f"{ctx}: dangling tool_call_id {t['tool_call_id']}" | |
| for r in load_rows("qa_sft"): | |
| check_messages(r["messages"], f"qa_sft/{r['id']}") | |
| for t in load_rows("trajectories_sft"): | |
| check_messages(t["turns"], f"traj/{t['id']}") | |
| for cfg_ in ("dpo", "dpo_matched"): | |
| for d in load_rows(cfg_): | |
| check_messages(d["chosen"], f"{cfg_}/{d['id']}/chosen") | |
| check_messages(d["rejected"], f"{cfg_}/{d['id']}/rejected") | |
| # v3: a matched pair differs ONLY in the final answer line (no length/tool-call confound) | |
| for d in load_rows("dpo_matched"): | |
| assert d["chosen"][:-1] == d["rejected"][:-1], f"matched pair differs before the final turn: {d['id']}" | |
| assert d["chosen"][-1]["content"].rsplit("Final answer:", 1)[0] == d["rejected"][-1]["content"].rsplit("Final answer:", 1)[0], d["id"] | |
| # counts match stats | |
| for cfg, s in stats.items(): | |
| assert s["num_examples"] == len(load_rows(cfg)), cfg | |
| print("invariants OK: SFT/RL disjoint, split sync, tool_call_id integrity, linkage, counts.") | |
| # ── containment decontamination (v2) ──────────────────────────────────────── | |
| STOPWORDS = { | |
| "the", "a", "an", "of", "in", "on", "at", "to", "for", "and", "or", "is", | |
| "are", "was", "were", "be", "been", "by", "as", "that", "this", "these", | |
| "those", "it", "its", "his", "her", "their", "who", "what", "which", "when", | |
| "where", "how", "did", "do", "does", "name", "named", "called", "from", | |
| "with", "into", "about", "first", "one", "whom", "he", "she", "they", | |
| } | |
| def _norm(s): | |
| s = unicodedata.normalize("NFC", s).lower() | |
| s = re.sub(r"[^\w\u4e00-\u9fff\u0400-\u04ff\u0900-\u097f\u3040-\u30ff]+", " ", s) | |
| return re.sub(r"\s+", " ", s).strip() | |
| def _tokens(s): | |
| t = _norm(s) | |
| if re.search(r"[\u4e00-\u9fff\u3040-\u30ff]", t): | |
| return set(t.replace(" ", "")) | |
| return {w for w in t.split() if w not in STOPWORDS} | |
| def _shingles(s, n=5): | |
| t = _norm(s) | |
| return set(t[i:i+n] for i in range(len(t) - n + 1)) or {t} | |
| def decontaminate(target): | |
| p = Path(target) | |
| bench = [] | |
| sources = sorted(p.glob("*.jsonl")) if p.is_dir() else [p] | |
| assert sources, f"no benchmark files at {target}" | |
| for src in sources: | |
| for line in src.read_text(encoding="utf-8").splitlines(): | |
| if not line.strip(): | |
| continue | |
| obj = json.loads(line) | |
| q = obj.get("question") or " ".join(str(v) for v in obj.values() | |
| if isinstance(v, (str, int, float))) | |
| bench.append(q) | |
| assert bench, f"no benchmark questions loaded from {target}: a check against nothing is not a pass" | |
| b_pre = [(_norm(b), _tokens(b), _shingles(b)) for b in bench] | |
| hits = [] | |
| for cfg in ["qa_sft", "qa_rl"]: | |
| for r in load_rows(cfg): | |
| qn, qt, qs = _norm(r["question"]), _tokens(r["question"]), _shingles(r["question"]) | |
| for i, (bn, bt, bs) in enumerate(b_pre): | |
| if (len(qn) >= 20 and qn in bn) or (len(bn) >= 20 and bn in qn): | |
| hits.append((r["id"], i, "substring", 1.0)); continue | |
| if min(len(qt), len(bt)) >= 6: | |
| cont = len(qt & bt) / min(len(qt), len(bt)) | |
| if cont >= 0.75: | |
| hits.append((r["id"], i, "token_containment", round(cont, 3))); continue | |
| jac = len(qs & bs) / max(1, len(qs | bs)) | |
| if jac >= 0.5: | |
| hits.append((r["id"], i, "shingle_jaccard", round(jac, 3))) | |
| if hits: | |
| print(f"CONTAMINATION CANDIDATES ({len(hits)}):") | |
| for h in hits[:50]: | |
| print(" ", h) | |
| sys.exit(1) | |
| print(f"decontamination clean: 0 overlaps against {len(bench)} benchmark questions " | |
| f"(substring; token containment >= 0.75; shingle-5 Jaccard >= 0.5)") | |
| if __name__ == "__main__": | |
| ap = argparse.ArgumentParser() | |
| ap.add_argument("--decontaminate", metavar="BENCHMARKS", default=None, | |
| help="containment check of all questions vs benchmark dumps " | |
| "(.jsonl file or directory of .jsonl files)") | |
| args = ap.parse_args() | |
| if args.decontaminate: | |
| decontaminate(args.decontaminate) | |
| else: | |
| rebuild() | |