Upload folder using huggingface_hub (part 14)

README.md

@@ -1,8 +1,5 @@
 # Spatial omics counts release
 
-One section per H5AD. X is absent; raw integer-valued counts are stored only in layers["counts"].
-Observation metadata, source feature identities, native coordinates and full cell-type compositions are retained.
-Images are paired PNG assets. Paths in the catalog/uns are relative to this dataset root.
-No normalization, batch correction or gene remapping is applied. Visium observations are spots, not isolated cells.
-Source annotations/weights are method-specific. Donor keys preserve documented scope; ambiguous donors are identified.
-Source archives, processing logs, PCA/UMAP, normalized matrices and duplicate count matrices are excluded.
+Base release: `2b5b090a1e804f9bb64c984d99f789aa`. Added Xenium GEO studies: GSE346866, GSE294965, GSE290577, GSE313006, GSE250346, GSE316387, GSE269354, GSE307404, GSE286184, GSE336890.
+
+Counts are stored as CSR in `layers/counts`. Visium observations are spots; Xenium observations are segmented cells with native micrometer centroids. Xenium uses targeted panels; absent panel genes are not observed zeros. This release retains base image assets; it does not claim registration of Xenium morphology images. Missing donor/group/cell-type values are not inferred.

gene_index/dataset_summary.json

@@ -66,6 +66,46 @@
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+    "max_n_genes": 343,
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+    "source": "GEO",
+    "dataset_id": "GSE269354",
+    "species": "Homo sapiens",
+    "n_samples": 2,
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+    "source_annotation_release": "unknown_not_inferred_from_IDs"
+  },
   {
     "source": "GEO",
     "dataset_id": "GSE278936",
@@ -133,6 +173,68 @@
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+  {
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     "dataset_id": "GSE296626",
@@ -175,6 +277,47 @@
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+    "dataset_id": "GSE307404",
+    "species": "Homo sapiens",
+    "n_samples": 24,
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+    "dataset_id": "GSE316387",
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+    "dataset_id": "GSE346866",
+    "species": "Homo sapiens",
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   {
     "source": "Zenodo",
     "dataset_id": "Zenodo_6578047",

gene_index/index.json

@@ -1,20 +1,22 @@
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