Add the 22 concept probing configs
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- LICENSE +2 -0
- README.md +269 -0
- functional_sites/metadata.json +21 -0
- functional_sites/test.parquet +3 -0
- functional_sites/train.parquet +3 -0
- functional_sites/validation.parquet +3 -0
- go_bp/metadata.json +319 -0
- go_bp/test.parquet +3 -0
- go_bp/train.parquet +3 -0
- go_bp/validation.parquet +3 -0
- go_cc/metadata.json +179 -0
- go_cc/test.parquet +3 -0
- go_cc/train.parquet +3 -0
- go_cc/validation.parquet +3 -0
- go_mf/metadata.json +138 -0
- go_mf/test.parquet +3 -0
- go_mf/train.parquet +3 -0
- go_mf/validation.parquet +3 -0
- interpro_active_site/metadata.json +73 -0
- interpro_active_site/test.parquet +3 -0
- interpro_active_site/train.parquet +3 -0
- interpro_active_site/validation.parquet +3 -0
- interpro_binding_site/metadata.json +54 -0
- interpro_binding_site/test.parquet +3 -0
- interpro_binding_site/train.parquet +3 -0
- interpro_binding_site/validation.parquet +3 -0
- interpro_conserved_site/metadata.json +349 -0
- interpro_conserved_site/test.parquet +3 -0
- interpro_conserved_site/train.parquet +3 -0
- interpro_conserved_site/validation.parquet +3 -0
- interpro_domain/metadata.json +379 -0
- interpro_domain/test.parquet +3 -0
- interpro_domain/train.parquet +3 -0
- interpro_domain/validation.parquet +3 -0
- interpro_family/metadata.json +254 -0
- interpro_family/test.parquet +3 -0
- interpro_family/train.parquet +3 -0
- interpro_family/validation.parquet +3 -0
- interpro_homologous_superfamily/metadata.json +115 -0
- interpro_homologous_superfamily/test.parquet +3 -0
- interpro_homologous_superfamily/train.parquet +3 -0
- interpro_homologous_superfamily/validation.parquet +3 -0
- interpro_repeat/metadata.json +80 -0
- interpro_repeat/test.parquet +3 -0
- interpro_repeat/train.parquet +3 -0
- interpro_repeat/validation.parquet +3 -0
- lipidation/metadata.json +40 -0
- lipidation/test.parquet +3 -0
- lipidation/train.parquet +3 -0
- lipidation/validation.parquet +3 -0
LICENSE
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Human tasks: CC BY 4.0, from Figshare record 10.6084/m9.figshare.31169506 (https://creativecommons.org/licenses/by/4.0/).
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Benchmark tasks metal_ion_binding, localization, ssp_q3 and ssp_q8: Apache 2.0, from huggingface.co/biomap-research.
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README.md
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---
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license: other
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license_name: cc-by-4.0-and-apache-2.0
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license_link: LICENSE
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pretty_name: Protein concept probing
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task_categories:
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- text-classification
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- token-classification
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tags:
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- biology
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- protein
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- probing
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- interpretability
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configs:
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- config_name: functional_sites
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data_files:
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- split: train
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path: functional_sites/train.parquet
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- split: validation
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path: functional_sites/validation.parquet
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- split: test
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path: functional_sites/test.parquet
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- config_name: go_bp
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data_files:
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- split: train
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path: go_bp/train.parquet
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- split: validation
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path: go_bp/validation.parquet
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- split: test
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path: go_bp/test.parquet
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- config_name: go_cc
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data_files:
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- split: train
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path: go_cc/train.parquet
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- split: validation
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path: go_cc/validation.parquet
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- split: test
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path: go_cc/test.parquet
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- config_name: go_mf
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data_files:
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- split: train
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path: go_mf/train.parquet
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- split: validation
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path: go_mf/validation.parquet
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- split: test
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path: go_mf/test.parquet
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- config_name: interpro_active_site
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data_files:
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- split: train
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path: interpro_active_site/train.parquet
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- split: validation
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path: interpro_active_site/validation.parquet
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- split: test
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path: interpro_active_site/test.parquet
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- config_name: interpro_binding_site
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data_files:
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- split: train
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path: interpro_binding_site/train.parquet
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- split: validation
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path: interpro_binding_site/validation.parquet
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- split: test
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path: interpro_binding_site/test.parquet
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- config_name: interpro_conserved_site
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data_files:
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- split: train
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path: interpro_conserved_site/train.parquet
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- split: validation
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path: interpro_conserved_site/validation.parquet
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- split: test
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path: interpro_conserved_site/test.parquet
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- config_name: interpro_domain
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data_files:
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- split: train
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path: interpro_domain/train.parquet
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- split: validation
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path: interpro_domain/validation.parquet
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- split: test
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path: interpro_domain/test.parquet
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- config_name: interpro_family
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data_files:
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- split: train
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path: interpro_family/train.parquet
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- split: validation
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path: interpro_family/validation.parquet
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- split: test
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path: interpro_family/test.parquet
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- config_name: interpro_homologous_superfamily
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data_files:
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- split: train
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path: interpro_homologous_superfamily/train.parquet
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- split: validation
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path: interpro_homologous_superfamily/validation.parquet
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- split: test
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path: interpro_homologous_superfamily/test.parquet
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- config_name: interpro_repeat
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data_files:
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- split: train
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path: interpro_repeat/train.parquet
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- split: validation
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path: interpro_repeat/validation.parquet
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- split: test
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path: interpro_repeat/test.parquet
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- config_name: lipidation
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data_files:
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- split: train
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path: lipidation/train.parquet
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- split: validation
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path: lipidation/validation.parquet
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- split: test
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path: lipidation/test.parquet
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- config_name: localization
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data_files:
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- split: train
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path: localization/train.parquet
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- split: validation
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path: localization/validation.parquet
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- split: test
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path: localization/test.parquet
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- config_name: metal_ion_binding
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data_files:
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- split: train
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path: metal_ion_binding/train.parquet
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- split: validation
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path: metal_ion_binding/validation.parquet
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- split: test
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path: metal_ion_binding/test.parquet
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- config_name: peptide
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data_files:
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| 129 |
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- split: train
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path: peptide/train.parquet
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- split: validation
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path: peptide/validation.parquet
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- split: test
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path: peptide/test.parquet
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- config_name: phosphorylation
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data_files:
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- split: train
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path: phosphorylation/train.parquet
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- split: validation
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path: phosphorylation/validation.parquet
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- split: test
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path: phosphorylation/test.parquet
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- config_name: post_translational_modification
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data_files:
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- split: train
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path: post_translational_modification/train.parquet
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- split: validation
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| 148 |
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path: post_translational_modification/validation.parquet
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- split: test
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path: post_translational_modification/test.parquet
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- config_name: prot_param
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data_files:
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- split: train
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path: prot_param/train.parquet
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- split: validation
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path: prot_param/validation.parquet
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- split: test
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| 158 |
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path: prot_param/test.parquet
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- config_name: secondary_structure
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data_files:
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- split: train
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path: secondary_structure/train.parquet
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- split: validation
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| 164 |
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path: secondary_structure/validation.parquet
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- split: test
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| 166 |
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path: secondary_structure/test.parquet
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- config_name: ssp_q3
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data_files:
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- split: train
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path: ssp_q3/train.parquet
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- split: validation
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path: ssp_q3/validation.parquet
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- split: test
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path: ssp_q3/test.parquet
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- config_name: ssp_q8
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data_files:
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| 177 |
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- split: train
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path: ssp_q8/train.parquet
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- split: validation
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path: ssp_q8/validation.parquet
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- split: test
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path: ssp_q8/test.parquet
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- config_name: topology
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data_files:
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- split: train
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path: topology/train.parquet
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- split: validation
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path: topology/validation.parquet
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- split: test
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path: topology/test.parquet
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---
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# Protein concept probing
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Twenty-two protein annotation tasks for probing what a protein language model's internal states encode, from
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amino-acid composition to Gene Ontology terms. Thirteen tasks label a whole protein and nine label each residue. The
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human tasks are reviewed *Homo sapiens* UniProtKB entries shorter than 1,024 residues; four further tasks are
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xTrimoPGLM benchmark tables.
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| Config | Level | Task | Proteins | Labels | Train / validation / test |
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|---|---|---|---|---|---|
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| `functional_sites` | residue | multiclass | 6,893 | 6 | 4,778 / 1,106 / 1,009 |
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| `go_bp` | protein | multilabel | 12,255 | 304 | 8,591 / 1,888 / 1,776 |
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| `go_cc` | protein | multilabel | 16,443 | 164 | 11,409 / 2,457 / 2,577 |
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| `go_mf` | protein | multilabel | 11,504 | 123 | 8,010 / 1,786 / 1,708 |
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| `interpro_active_site` | protein | multilabel | 718 | 58 | 482 / 116 / 120 |
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| `interpro_binding_site` | protein | multilabel | 640 | 39 | 446 / 87 / 107 |
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| `interpro_conserved_site` | protein | multilabel | 2,948 | 334 | 2,062 / 450 / 436 |
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| `interpro_domain` | protein | multilabel | 8,003 | 364 | 5,307 / 1,371 / 1,325 |
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| `interpro_family` | protein | multilabel | 3,601 | 239 | 2,097 / 678 / 826 |
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| `interpro_homologous_superfamily` | protein | multilabel | 8,198 | 100 | 5,499 / 1,368 / 1,331 |
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| `interpro_repeat` | protein | multilabel | 1,189 | 65 | 819 / 189 / 181 |
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| `lipidation` | residue | multiclass | 978 | 25 | 654 / 129 / 195 |
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| `localization` | protein | multiclass | 7,530 | 10 | 5,321 / 590 / 1,619 |
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| `metal_ion_binding` | protein | binary | 7,242 | 1 | 5,346 / 599 / 1,297 |
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| `peptide` | residue | multiclass | 4,977 | 4 | 3,485 / 700 / 792 |
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| `phosphorylation` | residue | multiclass | 8,648 | 6 | 6,057 / 1,304 / 1,287 |
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| 218 |
+
| `post_translational_modification` | residue | multiclass | 15,349 | 12 | 10,722 / 2,400 / 2,227 |
|
| 219 |
+
| `prot_param` | protein | regression | 18,126 | 31 | 12,747 / 2,777 / 2,602 |
|
| 220 |
+
| `secondary_structure` | residue | multiclass | 8,986 | 4 | 6,310 / 1,351 / 1,325 |
|
| 221 |
+
| `ssp_q3` | residue | multiclass | 11,479 | 3 | 9,731 / 1,083 / 665 |
|
| 222 |
+
| `ssp_q8` | residue | multiclass | 11,479 | 8 | 9,731 / 1,083 / 665 |
|
| 223 |
+
| `topology` | residue | multiclass | 4,777 | 17 | 3,378 / 754 / 645 |
|
| 224 |
+
|
| 225 |
+
## Homology leakage
|
| 226 |
+
|
| 227 |
+
The human tasks keep their published cluster splits: MMseqs2 clusters at 20% identity (30% for InterPro active
|
| 228 |
+
site, binding site, conserved site and repeat) are assigned whole to train plus validation or to test, and
|
| 229 |
+
validation clusters are drawn at 50% identity from the rest, with 80% coverage of the target sequence. The four
|
| 230 |
+
benchmark tasks keep their published test split, and validation is a random 10% of their train split, so they hold
|
| 231 |
+
no homology guarantee between train and validation.
|
| 232 |
+
|
| 233 |
+
## How it was built
|
| 234 |
+
|
| 235 |
+
1. Read each curated human table and its recorded train, validation and test assignment.
|
| 236 |
+
2. Turn its targets into one `label` column: a multi-hot vector over the InterPro entries or Gene Ontology terms,
|
| 237 |
+
31 ProtParam values, or one class index per residue in the contiguous order of the classes the table holds.
|
| 238 |
+
3. For Gene Ontology, keep the terms with more than six positive proteins in both validation and test.
|
| 239 |
+
4. For the four benchmark tables, split 10% of train off as validation with seed 184502, then drop sequences of
|
| 240 |
+
1,024 residues or more.
|
| 241 |
+
|
| 242 |
+
## Columns
|
| 243 |
+
|
| 244 |
+
| Column | Meaning |
|
| 245 |
+
|---|---|
|
| 246 |
+
| `id` | UniProt accession for the human tasks; a stable sequence-derived id for the benchmark tasks |
|
| 247 |
+
| `sequence` | amino-acid sequence |
|
| 248 |
+
| `label` | multi-hot list (multilabel), list of 31 floats (regression), integer (binary or multiclass), or one integer per residue (residue tasks) |
|
| 249 |
+
|
| 250 |
+
Each config folder also holds `metadata.json` with the task level, task type and label names. The benchmark tables
|
| 251 |
+
publish their classes but not the order of their integers, so their label names are `class_<n>`.
|
| 252 |
+
|
| 253 |
+
## What a model trained on it may say
|
| 254 |
+
|
| 255 |
+
These are probing benchmarks. InterPro entries and many UniProt features are curated with computational evidence,
|
| 256 |
+
so a probe here measures agreement with the annotations, not experimentally measured function. Residue tasks count
|
| 257 |
+
unannotated residues as their own class (`-`), which dominates most of them.
|
| 258 |
+
|
| 259 |
+
## Sources and licence
|
| 260 |
+
|
| 261 |
+
The human tasks are the curated tables of Figshare record 10.6084/m9.figshare.31169506, released under CC BY 4.0,
|
| 262 |
+
built from UniProtKB (accessed 2025-09-09) and the InterPro entry list (accessed 2025-09-16). The four benchmark
|
| 263 |
+
tasks (`metal_ion_binding`, `localization`, `ssp_q3`, `ssp_q8`) are from `biomap-research` on Hugging Face under
|
| 264 |
+
Apache 2.0.
|
| 265 |
+
|
| 266 |
+
## Files
|
| 267 |
+
|
| 268 |
+
`<config>/train.parquet`, `<config>/validation.parquet`, `<config>/test.parquet` and `<config>/metadata.json` for each
|
| 269 |
+
of the 22 configs.
|
functional_sites/metadata.json
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "functional_sites",
|
| 3 |
+
"task_level": "residue",
|
| 4 |
+
"task_type": "multiclass",
|
| 5 |
+
"num_labels": 6,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"-",
|
| 8 |
+
"ACT_SITE",
|
| 9 |
+
"ACT_SITE,BINDING",
|
| 10 |
+
"BINDING",
|
| 11 |
+
"BINDING,DNA_BIND",
|
| 12 |
+
"DNA_BIND"
|
| 13 |
+
],
|
| 14 |
+
"rows": {
|
| 15 |
+
"train": 4778,
|
| 16 |
+
"validation": 1106,
|
| 17 |
+
"test": 1009
|
| 18 |
+
},
|
| 19 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_uniprot_functional_sites_clustersplit_20_50.parquet.gz",
|
| 20 |
+
"licence": "CC BY 4.0"
|
| 21 |
+
}
|
functional_sites/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:db266d76cd74882b1761cc3260dc5d3fa420d644688b5f996283d22f2f6684c9
|
| 3 |
+
size 466683
|
functional_sites/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:05f1fdaf1d60419c1f9490a2f2a12c1331bdca6cc419cf840d661ff6104de5b4
|
| 3 |
+
size 2248243
|
functional_sites/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8a07f8b19bd394b2f74a1149c24290a839712d7048f9dac39e4c009596b75d04
|
| 3 |
+
size 532496
|
go_bp/metadata.json
ADDED
|
@@ -0,0 +1,319 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "go_bp",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 304,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"B cell differentiation [GO:0030183]",
|
| 8 |
+
"B cell proliferation [GO:0042100]",
|
| 9 |
+
"BMP signaling pathway [GO:0030509]",
|
| 10 |
+
"DNA damage response [GO:0006974]",
|
| 11 |
+
"DNA recombination [GO:0006310]",
|
| 12 |
+
"DNA repair [GO:0006281]",
|
| 13 |
+
"DNA replication [GO:0006260]",
|
| 14 |
+
"DNA-templated transcription [GO:0006351]",
|
| 15 |
+
"ERAD pathway [GO:0036503]",
|
| 16 |
+
"G protein-coupled receptor signaling pathway [GO:0007186]",
|
| 17 |
+
"G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger [GO:0007187]",
|
| 18 |
+
"Golgi organization [GO:0007030]",
|
| 19 |
+
"MAPK cascade [GO:0000165]",
|
| 20 |
+
"Notch signaling pathway [GO:0007219]",
|
| 21 |
+
"RNA processing [GO:0006396]",
|
| 22 |
+
"RNA splicing [GO:0008380]",
|
| 23 |
+
"Ras protein signal transduction [GO:0007265]",
|
| 24 |
+
"T cell activation [GO:0042110]",
|
| 25 |
+
"T cell differentiation in thymus [GO:0033077]",
|
| 26 |
+
"T cell receptor signaling pathway [GO:0050852]",
|
| 27 |
+
"Wnt signaling pathway [GO:0016055]",
|
| 28 |
+
"actin cytoskeleton organization [GO:0030036]",
|
| 29 |
+
"actin filament organization [GO:0007015]",
|
| 30 |
+
"adaptive immune response [GO:0002250]",
|
| 31 |
+
"adenylate cyclase-activating G protein-coupled receptor signaling pathway [GO:0007189]",
|
| 32 |
+
"aerobic respiration [GO:0009060]",
|
| 33 |
+
"anatomical structure morphogenesis [GO:0009653]",
|
| 34 |
+
"angiogenesis [GO:0001525]",
|
| 35 |
+
"animal organ morphogenesis [GO:0009887]",
|
| 36 |
+
"anterior/posterior pattern specification [GO:0009952]",
|
| 37 |
+
"antibacterial humoral response [GO:0019731]",
|
| 38 |
+
"antimicrobial humoral immune response mediated by antimicrobial peptide [GO:0061844]",
|
| 39 |
+
"antiviral innate immune response [GO:0140374]",
|
| 40 |
+
"apoptotic process [GO:0006915]",
|
| 41 |
+
"apoptotic signaling pathway [GO:0097190]",
|
| 42 |
+
"autophagosome assembly [GO:0000045]",
|
| 43 |
+
"autophagy [GO:0006914]",
|
| 44 |
+
"axon guidance [GO:0007411]",
|
| 45 |
+
"axonogenesis [GO:0007409]",
|
| 46 |
+
"behavioral fear response [GO:0001662]",
|
| 47 |
+
"blood coagulation [GO:0007596]",
|
| 48 |
+
"bone development [GO:0060348]",
|
| 49 |
+
"brain development [GO:0007420]",
|
| 50 |
+
"calcium ion transport [GO:0006816]",
|
| 51 |
+
"camera-type eye development [GO:0043010]",
|
| 52 |
+
"canonical Wnt signaling pathway [GO:0060070]",
|
| 53 |
+
"carbohydrate metabolic process [GO:0005975]",
|
| 54 |
+
"cell adhesion [GO:0007155]",
|
| 55 |
+
"cell chemotaxis [GO:0060326]",
|
| 56 |
+
"cell differentiation [GO:0030154]",
|
| 57 |
+
"cell division [GO:0051301]",
|
| 58 |
+
"cell migration [GO:0016477]",
|
| 59 |
+
"cell morphogenesis [GO:0000902]",
|
| 60 |
+
"cell population proliferation [GO:0008283]",
|
| 61 |
+
"cell surface receptor protein tyrosine kinase signaling pathway [GO:0007169]",
|
| 62 |
+
"cell surface receptor signaling pathway [GO:0007166]",
|
| 63 |
+
"cell-cell adhesion [GO:0098609]",
|
| 64 |
+
"cell-cell signaling [GO:0007267]",
|
| 65 |
+
"cellular response to cAMP [GO:0071320]",
|
| 66 |
+
"cellular response to calcium ion [GO:0071277]",
|
| 67 |
+
"cellular response to glucose stimulus [GO:0071333]",
|
| 68 |
+
"cellular response to hypoxia [GO:0071456]",
|
| 69 |
+
"cellular response to insulin stimulus [GO:0032869]",
|
| 70 |
+
"cellular response to leukemia inhibitory factor [GO:1990830]",
|
| 71 |
+
"cellular response to lipopolysaccharide [GO:0071222]",
|
| 72 |
+
"cellular response to mechanical stimulus [GO:0071260]",
|
| 73 |
+
"cellular response to oxidative stress [GO:0034599]",
|
| 74 |
+
"cellular response to retinoic acid [GO:0071300]",
|
| 75 |
+
"cellular response to tumor necrosis factor [GO:0071356]",
|
| 76 |
+
"cellular response to type II interferon [GO:0071346]",
|
| 77 |
+
"cellular response to virus [GO:0098586]",
|
| 78 |
+
"central nervous system development [GO:0007417]",
|
| 79 |
+
"cerebral cortex development [GO:0021987]",
|
| 80 |
+
"chemical synaptic transmission [GO:0007268]",
|
| 81 |
+
"chemotaxis [GO:0006935]",
|
| 82 |
+
"chloride transmembrane transport [GO:1902476]",
|
| 83 |
+
"cholesterol homeostasis [GO:0042632]",
|
| 84 |
+
"cholesterol metabolic process [GO:0008203]",
|
| 85 |
+
"chromatin organization [GO:0006325]",
|
| 86 |
+
"chromatin remodeling [GO:0006338]",
|
| 87 |
+
"chromosome segregation [GO:0007059]",
|
| 88 |
+
"cilium assembly [GO:0060271]",
|
| 89 |
+
"cytokine-mediated signaling pathway [GO:0019221]",
|
| 90 |
+
"cytoplasmic translation [GO:0002181]",
|
| 91 |
+
"cytoskeleton organization [GO:0007010]",
|
| 92 |
+
"defense response to Gram-negative bacterium [GO:0050829]",
|
| 93 |
+
"defense response to Gram-positive bacterium [GO:0050830]",
|
| 94 |
+
"defense response to bacterium [GO:0042742]",
|
| 95 |
+
"defense response to virus [GO:0051607]",
|
| 96 |
+
"determination of left/right symmetry [GO:0007368]",
|
| 97 |
+
"double-strand break repair [GO:0006302]",
|
| 98 |
+
"double-strand break repair via homologous recombination [GO:0000724]",
|
| 99 |
+
"endocytic recycling [GO:0032456]",
|
| 100 |
+
"endocytosis [GO:0006897]",
|
| 101 |
+
"endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]",
|
| 102 |
+
"endoplasmic reticulum unfolded protein response [GO:0030968]",
|
| 103 |
+
"energy homeostasis [GO:0097009]",
|
| 104 |
+
"epithelial cell proliferation [GO:0050673]",
|
| 105 |
+
"establishment of localization in cell [GO:0051649]",
|
| 106 |
+
"exocytosis [GO:0006887]",
|
| 107 |
+
"extracellular matrix organization [GO:0030198]",
|
| 108 |
+
"fat cell differentiation [GO:0045444]",
|
| 109 |
+
"fatty acid biosynthetic process [GO:0006633]",
|
| 110 |
+
"fatty acid metabolic process [GO:0006631]",
|
| 111 |
+
"female pregnancy [GO:0007565]",
|
| 112 |
+
"flagellated sperm motility [GO:0030317]",
|
| 113 |
+
"gene expression [GO:0010467]",
|
| 114 |
+
"glucose homeostasis [GO:0042593]",
|
| 115 |
+
"glucose metabolic process [GO:0006006]",
|
| 116 |
+
"glutathione metabolic process [GO:0006749]",
|
| 117 |
+
"heart development [GO:0007507]",
|
| 118 |
+
"hemopoiesis [GO:0030097]",
|
| 119 |
+
"heterochromatin formation [GO:0031507]",
|
| 120 |
+
"hippocampus development [GO:0021766]",
|
| 121 |
+
"immune response [GO:0006955]",
|
| 122 |
+
"immunoglobulin mediated immune response [GO:0016064]",
|
| 123 |
+
"in utero embryonic development [GO:0001701]",
|
| 124 |
+
"inflammatory response [GO:0006954]",
|
| 125 |
+
"innate immune response [GO:0045087]",
|
| 126 |
+
"insulin secretion [GO:0030073]",
|
| 127 |
+
"integrin-mediated signaling pathway [GO:0007229]",
|
| 128 |
+
"intracellular calcium ion homeostasis [GO:0006874]",
|
| 129 |
+
"intracellular protein transport [GO:0006886]",
|
| 130 |
+
"intracellular signal transduction [GO:0035556]",
|
| 131 |
+
"keratinocyte differentiation [GO:0030216]",
|
| 132 |
+
"killing of cells of another organism [GO:0031640]",
|
| 133 |
+
"lipid metabolic process [GO:0006629]",
|
| 134 |
+
"locomotory behavior [GO:0007626]",
|
| 135 |
+
"long-term synaptic potentiation [GO:0060291]",
|
| 136 |
+
"mRNA processing [GO:0006397]",
|
| 137 |
+
"mRNA splicing, via spliceosome [GO:0000398]",
|
| 138 |
+
"macroautophagy [GO:0016236]",
|
| 139 |
+
"male gonad development [GO:0008584]",
|
| 140 |
+
"methylation [GO:0032259]",
|
| 141 |
+
"microtubule cytoskeleton organization [GO:0000226]",
|
| 142 |
+
"mitochondrial translation [GO:0032543]",
|
| 143 |
+
"mitochondrion organization [GO:0007005]",
|
| 144 |
+
"mitotic cell cycle [GO:0000278]",
|
| 145 |
+
"modulation of chemical synaptic transmission [GO:0050804]",
|
| 146 |
+
"monoatomic ion transport [GO:0006811]",
|
| 147 |
+
"multicellular organism growth [GO:0035264]",
|
| 148 |
+
"muscle contraction [GO:0006936]",
|
| 149 |
+
"muscle organ development [GO:0007517]",
|
| 150 |
+
"negative regulation of BMP signaling pathway [GO:0030514]",
|
| 151 |
+
"negative regulation of DNA-templated transcription [GO:0045892]",
|
| 152 |
+
"negative regulation of G1/S transition of mitotic cell cycle [GO:2000134]",
|
| 153 |
+
"negative regulation of angiogenesis [GO:0016525]",
|
| 154 |
+
"negative regulation of apoptotic process [GO:0043066]",
|
| 155 |
+
"negative regulation of canonical NF-kappaB signal transduction [GO:0043124]",
|
| 156 |
+
"negative regulation of canonical Wnt signaling pathway [GO:0090090]",
|
| 157 |
+
"negative regulation of cell growth [GO:0030308]",
|
| 158 |
+
"negative regulation of cell migration [GO:0030336]",
|
| 159 |
+
"negative regulation of cell population proliferation [GO:0008285]",
|
| 160 |
+
"negative regulation of fat cell differentiation [GO:0045599]",
|
| 161 |
+
"negative regulation of gene expression [GO:0010629]",
|
| 162 |
+
"negative regulation of inflammatory response [GO:0050728]",
|
| 163 |
+
"negative regulation of neuron apoptotic process [GO:0043524]",
|
| 164 |
+
"negative regulation of neuron differentiation [GO:0045665]",
|
| 165 |
+
"negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction [GO:0051898]",
|
| 166 |
+
"negative regulation of transcription by RNA polymerase II [GO:0000122]",
|
| 167 |
+
"negative regulation of transforming growth factor beta receptor signaling pathway [GO:0030512]",
|
| 168 |
+
"negative regulation of translation [GO:0017148]",
|
| 169 |
+
"negative regulation of tumor necrosis factor production [GO:0032720]",
|
| 170 |
+
"nervous system development [GO:0007399]",
|
| 171 |
+
"neural tube closure [GO:0001843]",
|
| 172 |
+
"neurogenesis [GO:0022008]",
|
| 173 |
+
"neuron apoptotic process [GO:0051402]",
|
| 174 |
+
"neuron differentiation [GO:0030182]",
|
| 175 |
+
"neuron migration [GO:0001764]",
|
| 176 |
+
"neuron projection development [GO:0031175]",
|
| 177 |
+
"neuropeptide signaling pathway [GO:0007218]",
|
| 178 |
+
"ossification [GO:0001503]",
|
| 179 |
+
"osteoblast differentiation [GO:0001649]",
|
| 180 |
+
"osteoclast differentiation [GO:0030316]",
|
| 181 |
+
"phospholipase C-activating G protein-coupled receptor signaling pathway [GO:0007200]",
|
| 182 |
+
"phospholipid metabolic process [GO:0006644]",
|
| 183 |
+
"platelet activation [GO:0030168]",
|
| 184 |
+
"positive regulation of DNA repair [GO:0045739]",
|
| 185 |
+
"positive regulation of DNA-templated transcription [GO:0045893]",
|
| 186 |
+
"positive regulation of ERK1 and ERK2 cascade [GO:0070374]",
|
| 187 |
+
"positive regulation of JNK cascade [GO:0046330]",
|
| 188 |
+
"positive regulation of MAPK cascade [GO:0043410]",
|
| 189 |
+
"positive regulation of NF-kappaB transcription factor activity [GO:0051092]",
|
| 190 |
+
"positive regulation of T cell proliferation [GO:0042102]",
|
| 191 |
+
"positive regulation of angiogenesis [GO:0045766]",
|
| 192 |
+
"positive regulation of apoptotic process [GO:0043065]",
|
| 193 |
+
"positive regulation of canonical NF-kappaB signal transduction [GO:0043123]",
|
| 194 |
+
"positive regulation of canonical Wnt signaling pathway [GO:0090263]",
|
| 195 |
+
"positive regulation of cell adhesion [GO:0045785]",
|
| 196 |
+
"positive regulation of cell growth [GO:0030307]",
|
| 197 |
+
"positive regulation of cell migration [GO:0030335]",
|
| 198 |
+
"positive regulation of cell population proliferation [GO:0008284]",
|
| 199 |
+
"positive regulation of cold-induced thermogenesis [GO:0120162]",
|
| 200 |
+
"positive regulation of cytokine production [GO:0001819]",
|
| 201 |
+
"positive regulation of cytosolic calcium ion concentration [GO:0007204]",
|
| 202 |
+
"positive regulation of endothelial cell proliferation [GO:0001938]",
|
| 203 |
+
"positive regulation of gene expression [GO:0010628]",
|
| 204 |
+
"positive regulation of inflammatory response [GO:0050729]",
|
| 205 |
+
"positive regulation of insulin secretion [GO:0032024]",
|
| 206 |
+
"positive regulation of interleukin-6 production [GO:0032755]",
|
| 207 |
+
"positive regulation of interleukin-8 production [GO:0032757]",
|
| 208 |
+
"positive regulation of neuron differentiation [GO:0045666]",
|
| 209 |
+
"positive regulation of neuron projection development [GO:0010976]",
|
| 210 |
+
"positive regulation of osteoblast differentiation [GO:0045669]",
|
| 211 |
+
"positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction [GO:0051897]",
|
| 212 |
+
"positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]",
|
| 213 |
+
"positive regulation of protein localization to plasma membrane [GO:1903078]",
|
| 214 |
+
"positive regulation of protein phosphorylation [GO:0001934]",
|
| 215 |
+
"positive regulation of protein ubiquitination [GO:0031398]",
|
| 216 |
+
"positive regulation of protein-containing complex assembly [GO:0031334]",
|
| 217 |
+
"positive regulation of transcription by RNA polymerase II [GO:0045944]",
|
| 218 |
+
"positive regulation of transcription elongation by RNA polymerase II [GO:0032968]",
|
| 219 |
+
"positive regulation of translation [GO:0045727]",
|
| 220 |
+
"positive regulation of tumor necrosis factor production [GO:0032760]",
|
| 221 |
+
"potassium ion transmembrane transport [GO:0071805]",
|
| 222 |
+
"potassium ion transport [GO:0006813]",
|
| 223 |
+
"proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]",
|
| 224 |
+
"protein K48-linked ubiquitination [GO:0070936]",
|
| 225 |
+
"protein O-linked glycosylation [GO:0006493]",
|
| 226 |
+
"protein autophosphorylation [GO:0046777]",
|
| 227 |
+
"protein autoubiquitination [GO:0051865]",
|
| 228 |
+
"protein catabolic process [GO:0030163]",
|
| 229 |
+
"protein destabilization [GO:0031648]",
|
| 230 |
+
"protein folding [GO:0006457]",
|
| 231 |
+
"protein glycosylation [GO:0006486]",
|
| 232 |
+
"protein homotetramerization [GO:0051289]",
|
| 233 |
+
"protein import into nucleus [GO:0006606]",
|
| 234 |
+
"protein localization [GO:0008104]",
|
| 235 |
+
"protein localization to plasma membrane [GO:0072659]",
|
| 236 |
+
"protein maturation [GO:0051604]",
|
| 237 |
+
"protein modification process [GO:0036211]",
|
| 238 |
+
"protein phosphorylation [GO:0006468]",
|
| 239 |
+
"protein polyubiquitination [GO:0000209]",
|
| 240 |
+
"protein processing [GO:0016485]",
|
| 241 |
+
"protein stabilization [GO:0050821]",
|
| 242 |
+
"protein transport [GO:0015031]",
|
| 243 |
+
"protein ubiquitination [GO:0016567]",
|
| 244 |
+
"protein-containing complex assembly [GO:0065003]",
|
| 245 |
+
"proteolysis [GO:0006508]",
|
| 246 |
+
"proton motive force-driven mitochondrial ATP synthesis [GO:0042776]",
|
| 247 |
+
"proton transmembrane transport [GO:1902600]",
|
| 248 |
+
"rRNA processing [GO:0006364]",
|
| 249 |
+
"receptor internalization [GO:0031623]",
|
| 250 |
+
"receptor-mediated endocytosis [GO:0006898]",
|
| 251 |
+
"regulation of DNA repair [GO:0006282]",
|
| 252 |
+
"regulation of DNA replication [GO:0006275]",
|
| 253 |
+
"regulation of DNA-templated transcription [GO:0006355]",
|
| 254 |
+
"regulation of apoptotic process [GO:0042981]",
|
| 255 |
+
"regulation of blood pressure [GO:0008217]",
|
| 256 |
+
"regulation of cell cycle [GO:0051726]",
|
| 257 |
+
"regulation of cell growth [GO:0001558]",
|
| 258 |
+
"regulation of cell migration [GO:0030334]",
|
| 259 |
+
"regulation of cell population proliferation [GO:0042127]",
|
| 260 |
+
"regulation of cell shape [GO:0008360]",
|
| 261 |
+
"regulation of circadian rhythm [GO:0042752]",
|
| 262 |
+
"regulation of cytokine production [GO:0001817]",
|
| 263 |
+
"regulation of embryonic development [GO:0045995]",
|
| 264 |
+
"regulation of gene expression [GO:0010468]",
|
| 265 |
+
"regulation of inflammatory response [GO:0050727]",
|
| 266 |
+
"regulation of insulin secretion [GO:0050796]",
|
| 267 |
+
"regulation of mitotic cell cycle [GO:0007346]",
|
| 268 |
+
"regulation of protein stability [GO:0031647]",
|
| 269 |
+
"regulation of transcription by RNA polymerase II [GO:0006357]",
|
| 270 |
+
"regulation of translation [GO:0006417]",
|
| 271 |
+
"response to bacterium [GO:0009617]",
|
| 272 |
+
"response to endoplasmic reticulum stress [GO:0034976]",
|
| 273 |
+
"response to estradiol [GO:0032355]",
|
| 274 |
+
"response to estrogen [GO:0043627]",
|
| 275 |
+
"response to ethanol [GO:0045471]",
|
| 276 |
+
"response to hydrogen peroxide [GO:0042542]",
|
| 277 |
+
"response to hypoxia [GO:0001666]",
|
| 278 |
+
"response to insulin [GO:0032868]",
|
| 279 |
+
"response to ischemia [GO:0002931]",
|
| 280 |
+
"response to lipopolysaccharide [GO:0032496]",
|
| 281 |
+
"response to oxidative stress [GO:0006979]",
|
| 282 |
+
"response to retinoic acid [GO:0032526]",
|
| 283 |
+
"response to toxic substance [GO:0009636]",
|
| 284 |
+
"response to virus [GO:0009615]",
|
| 285 |
+
"response to xenobiotic stimulus [GO:0009410]",
|
| 286 |
+
"retina development in camera-type eye [GO:0060041]",
|
| 287 |
+
"retrograde transport, endosome to Golgi [GO:0042147]",
|
| 288 |
+
"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]",
|
| 289 |
+
"ribosomal small subunit biogenesis [GO:0042274]",
|
| 290 |
+
"roof of mouth development [GO:0060021]",
|
| 291 |
+
"sensory perception of sound [GO:0007605]",
|
| 292 |
+
"signal transduction [GO:0007165]",
|
| 293 |
+
"skeletal system development [GO:0001501]",
|
| 294 |
+
"smoothened signaling pathway [GO:0007224]",
|
| 295 |
+
"social behavior [GO:0035176]",
|
| 296 |
+
"sodium ion transmembrane transport [GO:0035725]",
|
| 297 |
+
"sodium ion transport [GO:0006814]",
|
| 298 |
+
"somatic stem cell population maintenance [GO:0035019]",
|
| 299 |
+
"spermatid development [GO:0007286]",
|
| 300 |
+
"spermatogenesis [GO:0007283]",
|
| 301 |
+
"synapse assembly [GO:0007416]",
|
| 302 |
+
"telomere maintenance [GO:0000723]",
|
| 303 |
+
"transcription by RNA polymerase II [GO:0006366]",
|
| 304 |
+
"transforming growth factor beta receptor signaling pathway [GO:0007179]",
|
| 305 |
+
"translation [GO:0006412]",
|
| 306 |
+
"ubiquitin-dependent protein catabolic process [GO:0006511]",
|
| 307 |
+
"vasodilation [GO:0042311]",
|
| 308 |
+
"vesicle-mediated transport [GO:0016192]",
|
| 309 |
+
"visual perception [GO:0007601]",
|
| 310 |
+
"xenobiotic metabolic process [GO:0006805]"
|
| 311 |
+
],
|
| 312 |
+
"rows": {
|
| 313 |
+
"train": 8591,
|
| 314 |
+
"validation": 1888,
|
| 315 |
+
"test": 1776
|
| 316 |
+
},
|
| 317 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_go_biological_process_clustersplit_20_50.parquet.gz",
|
| 318 |
+
"licence": "CC BY 4.0"
|
| 319 |
+
}
|
go_bp/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
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|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c803706298045c60b9791a07058d2ce8694ed615bc3e7843e9efcf0e7713cd26
|
| 3 |
+
size 797411
|
go_bp/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a5b1883bf0804f05010d7ab2c50cd19faf56b68cd9b2ee098d07f07df84dea52
|
| 3 |
+
size 3879157
|
go_bp/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f92a142a2b6d0f08aff96c38d7c4c3658abab26b026cf685daa6eef1f83c6c63
|
| 3 |
+
size 830931
|
go_cc/metadata.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "go_cc",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 164,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"Cajal body [GO:0015030]",
|
| 8 |
+
"Cul3-RING ubiquitin ligase complex [GO:0031463]",
|
| 9 |
+
"GABA-ergic synapse [GO:0098982]",
|
| 10 |
+
"Golgi apparatus [GO:0005794]",
|
| 11 |
+
"Golgi cisterna membrane [GO:0032580]",
|
| 12 |
+
"Golgi lumen [GO:0005796]",
|
| 13 |
+
"Golgi membrane [GO:0000139]",
|
| 14 |
+
"P-body [GO:0000932]",
|
| 15 |
+
"PML body [GO:0016605]",
|
| 16 |
+
"RNA polymerase II transcription regulator complex [GO:0090575]",
|
| 17 |
+
"SCF ubiquitin ligase complex [GO:0019005]",
|
| 18 |
+
"Schaffer collateral - CA1 synapse [GO:0098685]",
|
| 19 |
+
"Z disc [GO:0030018]",
|
| 20 |
+
"acrosomal vesicle [GO:0001669]",
|
| 21 |
+
"actin cytoskeleton [GO:0015629]",
|
| 22 |
+
"adherens junction [GO:0005912]",
|
| 23 |
+
"apical plasma membrane [GO:0016324]",
|
| 24 |
+
"autophagosome [GO:0005776]",
|
| 25 |
+
"autophagosome membrane [GO:0000421]",
|
| 26 |
+
"axon [GO:0030424]",
|
| 27 |
+
"axon cytoplasm [GO:1904115]",
|
| 28 |
+
"axoneme [GO:0005930]",
|
| 29 |
+
"azurophil granule lumen [GO:0035578]",
|
| 30 |
+
"basolateral plasma membrane [GO:0016323]",
|
| 31 |
+
"blood microparticle [GO:0072562]",
|
| 32 |
+
"catalytic step 2 spliceosome [GO:0071013]",
|
| 33 |
+
"cell body [GO:0044297]",
|
| 34 |
+
"cell cortex [GO:0005938]",
|
| 35 |
+
"cell junction [GO:0030054]",
|
| 36 |
+
"cell projection [GO:0042995]",
|
| 37 |
+
"cell surface [GO:0009986]",
|
| 38 |
+
"cell-cell junction [GO:0005911]",
|
| 39 |
+
"centriolar satellite [GO:0034451]",
|
| 40 |
+
"centriole [GO:0005814]",
|
| 41 |
+
"centrosome [GO:0005813]",
|
| 42 |
+
"chromatin [GO:0000785]",
|
| 43 |
+
"chromosome [GO:0005694]",
|
| 44 |
+
"chromosome, telomeric region [GO:0000781]",
|
| 45 |
+
"ciliary basal body [GO:0036064]",
|
| 46 |
+
"ciliary membrane [GO:0060170]",
|
| 47 |
+
"cilium [GO:0005929]",
|
| 48 |
+
"clathrin-coated endocytic vesicle membrane [GO:0030669]",
|
| 49 |
+
"clathrin-coated pit [GO:0005905]",
|
| 50 |
+
"collagen-containing extracellular matrix [GO:0062023]",
|
| 51 |
+
"cytoplasm [GO:0005737]",
|
| 52 |
+
"cytoplasmic microtubule [GO:0005881]",
|
| 53 |
+
"cytoplasmic ribonucleoprotein granule [GO:0036464]",
|
| 54 |
+
"cytoplasmic side of plasma membrane [GO:0009898]",
|
| 55 |
+
"cytoplasmic stress granule [GO:0010494]",
|
| 56 |
+
"cytoplasmic vesicle [GO:0031410]",
|
| 57 |
+
"cytoplasmic vesicle membrane [GO:0030659]",
|
| 58 |
+
"cytoskeleton [GO:0005856]",
|
| 59 |
+
"cytosol [GO:0005829]",
|
| 60 |
+
"cytosolic large ribosomal subunit [GO:0022625]",
|
| 61 |
+
"cytosolic ribosome [GO:0022626]",
|
| 62 |
+
"dendrite [GO:0030425]",
|
| 63 |
+
"dendritic spine [GO:0043197]",
|
| 64 |
+
"early endosome [GO:0005769]",
|
| 65 |
+
"early endosome membrane [GO:0031901]",
|
| 66 |
+
"endocytic vesicle membrane [GO:0030666]",
|
| 67 |
+
"endomembrane system [GO:0012505]",
|
| 68 |
+
"endoplasmic reticulum [GO:0005783]",
|
| 69 |
+
"endoplasmic reticulum lumen [GO:0005788]",
|
| 70 |
+
"endoplasmic reticulum membrane [GO:0005789]",
|
| 71 |
+
"endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]",
|
| 72 |
+
"endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]",
|
| 73 |
+
"endosome [GO:0005768]",
|
| 74 |
+
"endosome membrane [GO:0010008]",
|
| 75 |
+
"euchromatin [GO:0000791]",
|
| 76 |
+
"external side of plasma membrane [GO:0009897]",
|
| 77 |
+
"extracellular exosome [GO:0070062]",
|
| 78 |
+
"extracellular matrix [GO:0031012]",
|
| 79 |
+
"extracellular region [GO:0005576]",
|
| 80 |
+
"extracellular space [GO:0005615]",
|
| 81 |
+
"fibrillar center [GO:0001650]",
|
| 82 |
+
"ficolin-1-rich granule lumen [GO:1904813]",
|
| 83 |
+
"filopodium [GO:0030175]",
|
| 84 |
+
"focal adhesion [GO:0005925]",
|
| 85 |
+
"glutamatergic synapse [GO:0098978]",
|
| 86 |
+
"growth cone [GO:0030426]",
|
| 87 |
+
"heterochromatin [GO:0000792]",
|
| 88 |
+
"immunoglobulin complex [GO:0019814]",
|
| 89 |
+
"intercellular bridge [GO:0045171]",
|
| 90 |
+
"intermediate filament [GO:0005882]",
|
| 91 |
+
"intermediate filament cytoskeleton [GO:0045111]",
|
| 92 |
+
"intracellular membrane-bounded organelle [GO:0043231]",
|
| 93 |
+
"keratin filament [GO:0045095]",
|
| 94 |
+
"kinetochore [GO:0000776]",
|
| 95 |
+
"lamellipodium [GO:0030027]",
|
| 96 |
+
"late endosome [GO:0005770]",
|
| 97 |
+
"late endosome membrane [GO:0031902]",
|
| 98 |
+
"lysosomal lumen [GO:0043202]",
|
| 99 |
+
"lysosomal membrane [GO:0005765]",
|
| 100 |
+
"lysosome [GO:0005764]",
|
| 101 |
+
"melanosome [GO:0042470]",
|
| 102 |
+
"membrane [GO:0016020]",
|
| 103 |
+
"membrane raft [GO:0045121]",
|
| 104 |
+
"microtubule [GO:0005874]",
|
| 105 |
+
"microtubule cytoskeleton [GO:0015630]",
|
| 106 |
+
"microtubule organizing center [GO:0005815]",
|
| 107 |
+
"midbody [GO:0030496]",
|
| 108 |
+
"mitochondrial inner membrane [GO:0005743]",
|
| 109 |
+
"mitochondrial intermembrane space [GO:0005758]",
|
| 110 |
+
"mitochondrial matrix [GO:0005759]",
|
| 111 |
+
"mitochondrial membrane [GO:0031966]",
|
| 112 |
+
"mitochondrial outer membrane [GO:0005741]",
|
| 113 |
+
"mitochondrion [GO:0005739]",
|
| 114 |
+
"mitotic spindle [GO:0072686]",
|
| 115 |
+
"motile cilium [GO:0031514]",
|
| 116 |
+
"neuromuscular junction [GO:0031594]",
|
| 117 |
+
"neuron projection [GO:0043005]",
|
| 118 |
+
"neuronal cell body [GO:0043025]",
|
| 119 |
+
"nuclear body [GO:0016604]",
|
| 120 |
+
"nuclear envelope [GO:0005635]",
|
| 121 |
+
"nuclear matrix [GO:0016363]",
|
| 122 |
+
"nuclear membrane [GO:0031965]",
|
| 123 |
+
"nuclear speck [GO:0016607]",
|
| 124 |
+
"nucleolus [GO:0005730]",
|
| 125 |
+
"nucleoplasm [GO:0005654]",
|
| 126 |
+
"nucleosome [GO:0000786]",
|
| 127 |
+
"nucleus [GO:0005634]",
|
| 128 |
+
"perikaryon [GO:0043204]",
|
| 129 |
+
"perinuclear region of cytoplasm [GO:0048471]",
|
| 130 |
+
"peroxisomal membrane [GO:0005778]",
|
| 131 |
+
"peroxisome [GO:0005777]",
|
| 132 |
+
"photoreceptor outer segment [GO:0001750]",
|
| 133 |
+
"plasma membrane [GO:0005886]",
|
| 134 |
+
"postsynapse [GO:0098794]",
|
| 135 |
+
"postsynaptic density [GO:0014069]",
|
| 136 |
+
"postsynaptic density membrane [GO:0098839]",
|
| 137 |
+
"postsynaptic membrane [GO:0045211]",
|
| 138 |
+
"presynapse [GO:0098793]",
|
| 139 |
+
"proteasome complex [GO:0000502]",
|
| 140 |
+
"protein-containing complex [GO:0032991]",
|
| 141 |
+
"receptor complex [GO:0043235]",
|
| 142 |
+
"recycling endosome [GO:0055037]",
|
| 143 |
+
"recycling endosome membrane [GO:0055038]",
|
| 144 |
+
"ribonucleoprotein complex [GO:1990904]",
|
| 145 |
+
"ribosome [GO:0005840]",
|
| 146 |
+
"ruffle [GO:0001726]",
|
| 147 |
+
"ruffle membrane [GO:0032587]",
|
| 148 |
+
"sarcolemma [GO:0042383]",
|
| 149 |
+
"sarcoplasmic reticulum [GO:0016529]",
|
| 150 |
+
"secretory granule [GO:0030141]",
|
| 151 |
+
"secretory granule lumen [GO:0034774]",
|
| 152 |
+
"secretory granule membrane [GO:0030667]",
|
| 153 |
+
"side of membrane [GO:0098552]",
|
| 154 |
+
"site of double-strand break [GO:0035861]",
|
| 155 |
+
"small-subunit processome [GO:0032040]",
|
| 156 |
+
"sperm flagellum [GO:0036126]",
|
| 157 |
+
"spindle [GO:0005819]",
|
| 158 |
+
"spindle pole [GO:0000922]",
|
| 159 |
+
"spliceosomal complex [GO:0005681]",
|
| 160 |
+
"stress fiber [GO:0001725]",
|
| 161 |
+
"synapse [GO:0045202]",
|
| 162 |
+
"synaptic vesicle [GO:0008021]",
|
| 163 |
+
"synaptic vesicle membrane [GO:0030672]",
|
| 164 |
+
"tertiary granule membrane [GO:0070821]",
|
| 165 |
+
"trans-Golgi network [GO:0005802]",
|
| 166 |
+
"trans-Golgi network membrane [GO:0032588]",
|
| 167 |
+
"transcription regulator complex [GO:0005667]",
|
| 168 |
+
"transport vesicle [GO:0030133]",
|
| 169 |
+
"ubiquitin ligase complex [GO:0000151]",
|
| 170 |
+
"vesicle [GO:0031982]"
|
| 171 |
+
],
|
| 172 |
+
"rows": {
|
| 173 |
+
"train": 11409,
|
| 174 |
+
"validation": 2457,
|
| 175 |
+
"test": 2577
|
| 176 |
+
},
|
| 177 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_go_cellular_component_clustersplit_20_50.parquet.gz",
|
| 178 |
+
"licence": "CC BY 4.0"
|
| 179 |
+
}
|
go_cc/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ad92dfec319d27f880ec3f09d1d43d3ef70c2de6d99f9cd20eb30b647a9c4e4d
|
| 3 |
+
size 1102775
|
go_cc/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ae3af06c442f5e373aa752dd10eb9bffa59c8058de38861209b15c904a3f9e53
|
| 3 |
+
size 4939848
|
go_cc/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7c4b79289580dbd60debce4818bd93b71fcfeeb5fd41d84d92c5df26e7197ffd
|
| 3 |
+
size 1078765
|
go_mf/metadata.json
ADDED
|
@@ -0,0 +1,138 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "go_mf",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 123,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"4 iron, 4 sulfur cluster binding [GO:0051539]",
|
| 8 |
+
"ATP binding [GO:0005524]",
|
| 9 |
+
"ATP hydrolysis activity [GO:0016887]",
|
| 10 |
+
"ATPase binding [GO:0051117]",
|
| 11 |
+
"DNA binding [GO:0003677]",
|
| 12 |
+
"DNA-binding transcription activator activity, RNA polymerase II-specific [GO:0001228]",
|
| 13 |
+
"DNA-binding transcription factor activity [GO:0003700]",
|
| 14 |
+
"DNA-binding transcription factor activity, RNA polymerase II-specific [GO:0000981]",
|
| 15 |
+
"DNA-binding transcription factor binding [GO:0140297]",
|
| 16 |
+
"DNA-binding transcription repressor activity, RNA polymerase II-specific [GO:0001227]",
|
| 17 |
+
"G protein activity [GO:0003925]",
|
| 18 |
+
"G protein-coupled receptor activity [GO:0004930]",
|
| 19 |
+
"G protein-coupled receptor binding [GO:0001664]",
|
| 20 |
+
"GDP binding [GO:0019003]",
|
| 21 |
+
"GTP binding [GO:0005525]",
|
| 22 |
+
"GTPase activator activity [GO:0005096]",
|
| 23 |
+
"GTPase activity [GO:0003924]",
|
| 24 |
+
"NADH dehydrogenase (ubiquinone) activity [GO:0008137]",
|
| 25 |
+
"RNA binding [GO:0003723]",
|
| 26 |
+
"RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]",
|
| 27 |
+
"RNA polymerase II transcription regulatory region sequence-specific DNA binding [GO:0000977]",
|
| 28 |
+
"RNA polymerase II-specific DNA-binding transcription factor binding [GO:0061629]",
|
| 29 |
+
"SNARE binding [GO:0000149]",
|
| 30 |
+
"actin binding [GO:0003779]",
|
| 31 |
+
"actin filament binding [GO:0051015]",
|
| 32 |
+
"amyloid-beta binding [GO:0001540]",
|
| 33 |
+
"antiporter activity [GO:0015297]",
|
| 34 |
+
"beta-catenin binding [GO:0008013]",
|
| 35 |
+
"cadherin binding [GO:0045296]",
|
| 36 |
+
"calcium ion binding [GO:0005509]",
|
| 37 |
+
"calcium-dependent protein binding [GO:0048306]",
|
| 38 |
+
"calmodulin binding [GO:0005516]",
|
| 39 |
+
"carbohydrate binding [GO:0030246]",
|
| 40 |
+
"cell adhesion molecule binding [GO:0050839]",
|
| 41 |
+
"chloride channel activity [GO:0005254]",
|
| 42 |
+
"chromatin binding [GO:0003682]",
|
| 43 |
+
"cis-regulatory region sequence-specific DNA binding [GO:0000987]",
|
| 44 |
+
"cysteine-type deubiquitinase activity [GO:0004843]",
|
| 45 |
+
"cytokine activity [GO:0005125]",
|
| 46 |
+
"cytoskeletal protein binding [GO:0008092]",
|
| 47 |
+
"electron transfer activity [GO:0009055]",
|
| 48 |
+
"enzyme activator activity [GO:0008047]",
|
| 49 |
+
"enzyme binding [GO:0019899]",
|
| 50 |
+
"flavin adenine dinucleotide binding [GO:0050660]",
|
| 51 |
+
"growth factor activity [GO:0008083]",
|
| 52 |
+
"guanyl-nucleotide exchange factor activity [GO:0005085]",
|
| 53 |
+
"heme binding [GO:0020037]",
|
| 54 |
+
"heparin binding [GO:0008201]",
|
| 55 |
+
"histone binding [GO:0042393]",
|
| 56 |
+
"histone deacetylase binding [GO:0042826]",
|
| 57 |
+
"hormone activity [GO:0005179]",
|
| 58 |
+
"hydrolase activity [GO:0016787]",
|
| 59 |
+
"identical protein binding [GO:0042802]",
|
| 60 |
+
"integrin binding [GO:0005178]",
|
| 61 |
+
"iron ion binding [GO:0005506]",
|
| 62 |
+
"kinase binding [GO:0019900]",
|
| 63 |
+
"lipid binding [GO:0008289]",
|
| 64 |
+
"mRNA 3'-UTR binding [GO:0003730]",
|
| 65 |
+
"mRNA binding [GO:0003729]",
|
| 66 |
+
"magnesium ion binding [GO:0000287]",
|
| 67 |
+
"manganese ion binding [GO:0030145]",
|
| 68 |
+
"metal ion binding [GO:0046872]",
|
| 69 |
+
"microtubule binding [GO:0008017]",
|
| 70 |
+
"molecular adaptor activity [GO:0060090]",
|
| 71 |
+
"nucleic acid binding [GO:0003676]",
|
| 72 |
+
"nucleotide binding [GO:0000166]",
|
| 73 |
+
"odorant binding [GO:0005549]",
|
| 74 |
+
"olfactory receptor activity [GO:0004984]",
|
| 75 |
+
"p53 binding [GO:0002039]",
|
| 76 |
+
"peptidase activity [GO:0008233]",
|
| 77 |
+
"phosphatidylinositol binding [GO:0035091]",
|
| 78 |
+
"phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]",
|
| 79 |
+
"phospholipid binding [GO:0005543]",
|
| 80 |
+
"promoter-specific chromatin binding [GO:1990841]",
|
| 81 |
+
"protease binding [GO:0002020]",
|
| 82 |
+
"protein dimerization activity [GO:0046983]",
|
| 83 |
+
"protein domain specific binding [GO:0019904]",
|
| 84 |
+
"protein heterodimerization activity [GO:0046982]",
|
| 85 |
+
"protein homodimerization activity [GO:0042803]",
|
| 86 |
+
"protein kinase activity [GO:0004672]",
|
| 87 |
+
"protein kinase binding [GO:0019901]",
|
| 88 |
+
"protein phosphatase binding [GO:0019903]",
|
| 89 |
+
"protein phosphatase inhibitor activity [GO:0004864]",
|
| 90 |
+
"protein serine kinase activity [GO:0106310]",
|
| 91 |
+
"protein serine/threonine kinase activity [GO:0004674]",
|
| 92 |
+
"protein serine/threonine phosphatase activity [GO:0004722]",
|
| 93 |
+
"protein tyrosine kinase activity [GO:0004713]",
|
| 94 |
+
"protein tyrosine phosphatase activity [GO:0004725]",
|
| 95 |
+
"protein-containing complex binding [GO:0044877]",
|
| 96 |
+
"protein-macromolecule adaptor activity [GO:0030674]",
|
| 97 |
+
"receptor ligand activity [GO:0048018]",
|
| 98 |
+
"receptor tyrosine kinase binding [GO:0030971]",
|
| 99 |
+
"ribosome binding [GO:0043022]",
|
| 100 |
+
"scaffold protein binding [GO:0097110]",
|
| 101 |
+
"sequence-specific DNA binding [GO:0043565]",
|
| 102 |
+
"sequence-specific double-stranded DNA binding [GO:1990837]",
|
| 103 |
+
"serine-type endopeptidase activity [GO:0004252]",
|
| 104 |
+
"serine-type endopeptidase inhibitor activity [GO:0004867]",
|
| 105 |
+
"signaling adaptor activity [GO:0035591]",
|
| 106 |
+
"signaling receptor activity [GO:0038023]",
|
| 107 |
+
"signaling receptor binding [GO:0005102]",
|
| 108 |
+
"single-stranded DNA binding [GO:0003697]",
|
| 109 |
+
"small GTPase binding [GO:0031267]",
|
| 110 |
+
"structural constituent of cytoskeleton [GO:0005200]",
|
| 111 |
+
"structural constituent of ribosome [GO:0003735]",
|
| 112 |
+
"structural molecule activity [GO:0005198]",
|
| 113 |
+
"tRNA binding [GO:0000049]",
|
| 114 |
+
"transcription cis-regulatory region binding [GO:0000976]",
|
| 115 |
+
"transcription coactivator activity [GO:0003713]",
|
| 116 |
+
"transcription coregulator activity [GO:0003712]",
|
| 117 |
+
"transcription corepressor activity [GO:0003714]",
|
| 118 |
+
"transcription corepressor binding [GO:0001222]",
|
| 119 |
+
"transmembrane signaling receptor activity [GO:0004888]",
|
| 120 |
+
"transmembrane transporter binding [GO:0044325]",
|
| 121 |
+
"ubiquitin binding [GO:0043130]",
|
| 122 |
+
"ubiquitin protein ligase activity [GO:0061630]",
|
| 123 |
+
"ubiquitin protein ligase binding [GO:0031625]",
|
| 124 |
+
"ubiquitin-like ligase-substrate adaptor activity [GO:1990756]",
|
| 125 |
+
"ubiquitin-protein transferase activity [GO:0004842]",
|
| 126 |
+
"unfolded protein binding [GO:0051082]",
|
| 127 |
+
"virus receptor activity [GO:0001618]",
|
| 128 |
+
"voltage-gated potassium channel activity [GO:0005249]",
|
| 129 |
+
"zinc ion binding [GO:0008270]"
|
| 130 |
+
],
|
| 131 |
+
"rows": {
|
| 132 |
+
"train": 8010,
|
| 133 |
+
"validation": 1786,
|
| 134 |
+
"test": 1708
|
| 135 |
+
},
|
| 136 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_go_molecular_function_clustersplit_20_50.parquet.gz",
|
| 137 |
+
"licence": "CC BY 4.0"
|
| 138 |
+
}
|
go_mf/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b1c3b9442f8847428a2c10de1d6c995eb539e5077f4d9be1ac53f2d67c21c848
|
| 3 |
+
size 777982
|
go_mf/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cd5bf112daff632b50013ab3a85bbd4756d31c4f10269eef2e3975fd8238d8f1
|
| 3 |
+
size 3677240
|
go_mf/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3bdd0ce6ea301ccda42ad1cf9c87b6a5df6997399ca4f650dfc77281673b952e
|
| 3 |
+
size 815038
|
interpro_active_site/metadata.json
ADDED
|
@@ -0,0 +1,73 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_active_site",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 58,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000169__cysteine_peptidase,_cysteine_active_site",
|
| 8 |
+
"IPR000180__membrane_dipeptidase,_active_site",
|
| 9 |
+
"IPR000590__hydroxymethylglutaryl-coenzyme_a_synthase,_active_site",
|
| 10 |
+
"IPR001252__malate_dehydrogenase,_active_site",
|
| 11 |
+
"IPR001345__phosphoglycerate/bisphosphoglycerate_mutase,_active_site",
|
| 12 |
+
"IPR001555__phosphoribosylglycinamide_formyltransferase,_active_site",
|
| 13 |
+
"IPR001579__glycosyl_hydrolase_family_18,_active_site",
|
| 14 |
+
"IPR001969__aspartic_peptidase,_active_site",
|
| 15 |
+
"IPR002471__peptidase_s9,_serine_active_site",
|
| 16 |
+
"IPR004164__coenzyme_a_transferase_active_site",
|
| 17 |
+
"IPR006650__adenosine/amp_deaminase_active_site",
|
| 18 |
+
"IPR008259__fmn-dependent_alpha-hydroxy_acid_dehydrogenase,_active_site",
|
| 19 |
+
"IPR008261__iodothyronine_deiodinase,_active_site",
|
| 20 |
+
"IPR008266__tyrosine-protein_kinase,_active_site",
|
| 21 |
+
"IPR008268__peptidase_s16,_active_site",
|
| 22 |
+
"IPR008271__serine/threonine-protein_kinase,_active_site",
|
| 23 |
+
"IPR012999__pyridine_nucleotide-disulphide_oxidoreductase,_class_i,_active_site",
|
| 24 |
+
"IPR013808__transglutaminase,_active_site",
|
| 25 |
+
"IPR016129__peptidase_family_c14a,_his_active_site",
|
| 26 |
+
"IPR016130__protein-tyrosine_phosphatase,_active_site",
|
| 27 |
+
"IPR018057__deoxyribonuclease_i,_active_site",
|
| 28 |
+
"IPR018114__serine_proteases,_trypsin_family,_histidine_active_site",
|
| 29 |
+
"IPR018117__dna_methylase,_c-5_cytosine-specific,_active_site",
|
| 30 |
+
"IPR018177__l-lactate_dehydrogenase,_active_site",
|
| 31 |
+
"IPR018202__serine_carboxypeptidase,_serine_active_site",
|
| 32 |
+
"IPR018209__pyruvate_kinase,_active_site",
|
| 33 |
+
"IPR018299__alkaline_phosphatase,_active_site",
|
| 34 |
+
"IPR018521__dna_topoisomerase_ib,_active_site",
|
| 35 |
+
"IPR019756__peptidase_s26a,_signal_peptidase_i,_serine_active_site",
|
| 36 |
+
"IPR019796__glucose-6-phosphate_dehydrogenase,_active_site",
|
| 37 |
+
"IPR019826__carboxylesterase_type_b,_active_site",
|
| 38 |
+
"IPR020003__atpase,_alpha/beta_subunit,_nucleotide-binding_domain,_active_site",
|
| 39 |
+
"IPR020548__fructose-1,6-bisphosphatase,_active_site",
|
| 40 |
+
"IPR020610__thiolase,_active_site",
|
| 41 |
+
"IPR020615__thiolase,_acyl-enzyme_intermediate_active_site",
|
| 42 |
+
"IPR020830__glyceraldehyde_3-phosphate_dehydrogenase,_active_site",
|
| 43 |
+
"IPR022398__peptidase_s8,_subtilisin,_his-active_site",
|
| 44 |
+
"IPR022415__atp:guanido_phosphotransferase_active_site",
|
| 45 |
+
"IPR023005__nucleoside_diphosphate_kinase,_active_site",
|
| 46 |
+
"IPR023313__ubiquitin-conjugating_enzyme,_active_site",
|
| 47 |
+
"IPR023406__dna_topoisomerase,_type_ia,_active_site",
|
| 48 |
+
"IPR023411__ribonuclease_a,_active_site",
|
| 49 |
+
"IPR023827__peptidase_s8,_subtilisin,_asp-active_site",
|
| 50 |
+
"IPR023828__peptidase_s8,_subtilisin,_ser-active_site",
|
| 51 |
+
"IPR025660__cysteine_peptidase,_histidine_active_site",
|
| 52 |
+
"IPR025661__cysteine_peptidase,_asparagine_active_site",
|
| 53 |
+
"IPR029759__glutathione_peroxidase_active_site",
|
| 54 |
+
"IPR030458__glycosyl_hydrolases_family_31,_active_site",
|
| 55 |
+
"IPR030475__ribonucleotide_reductase_small_subunit,_acitve_site",
|
| 56 |
+
"IPR033112__phospholipase_a2,_aspartic_acid_active_site",
|
| 57 |
+
"IPR033113__phospholipase_a2,_histidine_active_site",
|
| 58 |
+
"IPR033116__serine_proteases,_trypsin_family,_serine_active_site",
|
| 59 |
+
"IPR033127__ubiquitin-activating_enzyme_e1,_cys_active_site",
|
| 60 |
+
"IPR033128__adenylosuccinate_synthase,_active_site",
|
| 61 |
+
"IPR033139__peptidase_family_c14a,_cysteine_active_site",
|
| 62 |
+
"IPR033140__lipase,_gdxg,_putative_serine_active_site",
|
| 63 |
+
"IPR033379__histidine_acid_phosphatase_active_site",
|
| 64 |
+
"IPR033524__leu/phe/val_dehydrogenases_active_site"
|
| 65 |
+
],
|
| 66 |
+
"rows": {
|
| 67 |
+
"train": 482,
|
| 68 |
+
"validation": 116,
|
| 69 |
+
"test": 120
|
| 70 |
+
},
|
| 71 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_active_site_clustersplit_30_50.parquet.gz",
|
| 72 |
+
"licence": "CC BY 4.0"
|
| 73 |
+
}
|
interpro_active_site/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d3dcb8bf542f81ce2b86e3f64fcd8a04ecc534ffe1eed334c36111b0bba0dee6
|
| 3 |
+
size 68229
|
interpro_active_site/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:64b3acb63bc8c97b925b782aa407d9ab85db0125134c4afd63089a2353bf648d
|
| 3 |
+
size 260418
|
interpro_active_site/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2c766f33f5bacbae56056044abaaa6836973f599533ed453a15480154325740c
|
| 3 |
+
size 56418
|
interpro_binding_site/metadata.json
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_binding_site",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 39,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000048__iq_motif,_ef-hand_binding_site",
|
| 8 |
+
"IPR000222__ppm-type_phosphatase,_divalent_cation_binding",
|
| 9 |
+
"IPR000634__serine/threonine_dehydratase,_pyridoxal-phosphate-binding_site",
|
| 10 |
+
"IPR001431__peptidase_m16,_zinc-binding_site",
|
| 11 |
+
"IPR001882__biotin-binding_site",
|
| 12 |
+
"IPR001917__aminotransferase,_class-ii,_pyridoxal-phosphate_binding_site",
|
| 13 |
+
"IPR003016__2-oxo_acid_dehydrogenase,_lipoyl-binding_site",
|
| 14 |
+
"IPR004163__coenzyme_a_transferase_binding_site",
|
| 15 |
+
"IPR004838__aminotransferases,_class-i,_pyridoxal-phosphate-binding_site",
|
| 16 |
+
"IPR013838__beta_tubulin,_autoregulation_binding_site",
|
| 17 |
+
"IPR016192__apobec/cmp_deaminase,_zinc-binding",
|
| 18 |
+
"IPR017441__protein_kinase,_atp_binding_site",
|
| 19 |
+
"IPR018064__metallothionein,_vertebrate,_metal_binding_site",
|
| 20 |
+
"IPR018136__aconitase_family,_4fe-4s_cluster_binding_site",
|
| 21 |
+
"IPR018152__superoxide_dismutase,_copper/zinc,_binding_site",
|
| 22 |
+
"IPR018195__transferrin_family,_iron_binding_site",
|
| 23 |
+
"IPR018220__adenylosuccinate_synthase,_gtp-binding_site",
|
| 24 |
+
"IPR018247__ef-hand_1,_calcium-binding_site",
|
| 25 |
+
"IPR018298__adrenodoxin,_iron-sulphur_binding_site",
|
| 26 |
+
"IPR018301__aromatic_amino_acid_hydroxylase,_iron/copper_binding_site",
|
| 27 |
+
"IPR018349__peptidase_m24a,_methionine_aminopeptidase,_subfamily_2,_binding_site",
|
| 28 |
+
"IPR018506__cytochrome_b5,_heme-binding_site",
|
| 29 |
+
"IPR019798__serine_hydroxymethyltransferase,_pyridoxal_phosphate_binding_site",
|
| 30 |
+
"IPR019807__hexokinase,_binding_site",
|
| 31 |
+
"IPR019843__dna_polymerase_family_x,_binding_site",
|
| 32 |
+
"IPR020537__atp_synthase,_f0_complex,_subunit_c,_dccd-binding_site",
|
| 33 |
+
"IPR020578__aminotransferase_class-v,_pyridoxal-phosphate_binding_site",
|
| 34 |
+
"IPR020583__inositol_monophosphatase,_metal-binding_site",
|
| 35 |
+
"IPR020826__transketolase_binding_site",
|
| 36 |
+
"IPR020833__lipoxygenase,_iron_binding_site",
|
| 37 |
+
"IPR020847__ap_endonuclease_1,_binding_site",
|
| 38 |
+
"IPR020855__ureohydrolase,_manganese-binding_site",
|
| 39 |
+
"IPR020969__ankyrin-g_binding_site",
|
| 40 |
+
"IPR021115__pyridoxal-phosphate_binding_site",
|
| 41 |
+
"IPR021158__peptidase_m10a,_cysteine_switch,_zinc_binding_site",
|
| 42 |
+
"IPR022653__orn/dap/arg_decarboxylase_2,_pyridoxal-phosphate_binding_site",
|
| 43 |
+
"IPR025662__sigma-54_interaction_domain,_atp-binding_site_1",
|
| 44 |
+
"IPR025735__rip_homotypic_interaction_motif",
|
| 45 |
+
"IPR027430__visual_pigments_(opsins)_retinal_binding_site"
|
| 46 |
+
],
|
| 47 |
+
"rows": {
|
| 48 |
+
"train": 446,
|
| 49 |
+
"validation": 87,
|
| 50 |
+
"test": 107
|
| 51 |
+
},
|
| 52 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_binding_site_clustersplit_30_50.parquet.gz",
|
| 53 |
+
"licence": "CC BY 4.0"
|
| 54 |
+
}
|
interpro_binding_site/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:8dffbcd3ffa09ac26d9e4f1d52a9912e8c4fced1b97dc68df0df6454040c7297
|
| 3 |
+
size 55787
|
interpro_binding_site/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:e891a477d5e67016488f8971e98cd70c84f79d10eefc9e40f02dd696fd14d82f
|
| 3 |
+
size 234373
|
interpro_binding_site/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:1a43da648ee8cf2a43546a90c5c78b67dc126a5eae3ecca788a60dda78061738
|
| 3 |
+
size 50456
|
interpro_conserved_site/metadata.json
ADDED
|
@@ -0,0 +1,349 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_conserved_site",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 334,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000047__helix-turn-helix_motif",
|
| 8 |
+
"IPR000111__glycoside_hydrolase_family_27/36,_conserved_site",
|
| 9 |
+
"IPR000203__gps_motif",
|
| 10 |
+
"IPR000445__helix-hairpin-helix_motif",
|
| 11 |
+
"IPR000629__atp-dependent_rna_helicase_dead-box,_conserved_site",
|
| 12 |
+
"IPR000633__vinculin,_conserved_site",
|
| 13 |
+
"IPR000637__hmg-i/hmg-y,_dna-binding,_conserved_site",
|
| 14 |
+
"IPR000804__clathrin_adaptor_complex,_small_chain",
|
| 15 |
+
"IPR000808__iron-sulfur_cluster_carrier_protein-like,_conserved_site",
|
| 16 |
+
"IPR000827__cc_chemokine,_conserved_site",
|
| 17 |
+
"IPR000842__phosphoribosyl_pyrophosphate_synthetase,_conserved_site",
|
| 18 |
+
"IPR000952__ab_hydrolase_4,_conserved_site",
|
| 19 |
+
"IPR001006__procollagen-lysine_5-dioxygenase,_conserved_site",
|
| 20 |
+
"IPR001131__peptidase_m24b,_x-pro_dipeptidase/aminopeptidase_p,_conserved_site",
|
| 21 |
+
"IPR001261__arge/dape/acy1/cpg2/yscs,_conserved_site",
|
| 22 |
+
"IPR001307__thiosulphate_sulfurtransferase,_conserved_site",
|
| 23 |
+
"IPR001326__translation_elongation_factor_ef1b,_beta/delta_chains,_conserved_site",
|
| 24 |
+
"IPR001331__guanine-nucleotide_dissociation_stimulator,_cdc24,_conserved_site",
|
| 25 |
+
"IPR001363__proteinase_inhibitor_i25c,_fetuin,_conserved_site",
|
| 26 |
+
"IPR001412__aminoacyl-trna_synthetase,_class_i,_conserved_site",
|
| 27 |
+
"IPR001426__tyrosine-protein_kinase,_receptor_class_v,_conserved_site",
|
| 28 |
+
"IPR001514__dna-directed_rna_polymerase,_30-40kda_subunit,_conserved_site",
|
| 29 |
+
"IPR001522__fatty_acid_desaturase_type_1,_conserved_site",
|
| 30 |
+
"IPR001562__zinc_finger,_btk_motif",
|
| 31 |
+
"IPR001589__actinin-type_actin-binding_domain,_conserved_site",
|
| 32 |
+
"IPR001751__s100/calcium_binding_protein_7/8-like,_conserved_site",
|
| 33 |
+
"IPR001824__tyrosine-protein_kinase,_receptor_class_iii,_conserved_site",
|
| 34 |
+
"IPR001827__homeobox_protein,_antennapedia_type,_conserved_site",
|
| 35 |
+
"IPR001858__phosphatidylethanolamine-binding,_conserved_site",
|
| 36 |
+
"IPR001999__osteonectin-like,_conserved_site",
|
| 37 |
+
"IPR002011__tyrosine-protein_kinase,_receptor_class_ii,_conserved_site",
|
| 38 |
+
"IPR002012__gonadotropin-releasing_hormone",
|
| 39 |
+
"IPR002052__dna_methylase,_n-6_adenine-specific,_conserved_site",
|
| 40 |
+
"IPR002173__carbohydrate/purine_kinase,_pfkb,_conserved_site",
|
| 41 |
+
"IPR002194__chaperonin_tcp-1,_conserved_site",
|
| 42 |
+
"IPR002328__alcohol_dehydrogenase,_zinc-type,_conserved_site",
|
| 43 |
+
"IPR002364__quinone_oxidoreductase/zeta-crystallin,_conserved_site",
|
| 44 |
+
"IPR002464__dna/rna_helicase,_atp-dependent,_deah-box_type,_conserved_site",
|
| 45 |
+
"IPR003006__immunoglobulin/major_histocompatibility_complex,_conserved_site",
|
| 46 |
+
"IPR003109__goloco_motif",
|
| 47 |
+
"IPR003527__mitogen-activated_protein_(map)_kinase,_conserved_site",
|
| 48 |
+
"IPR003528__long_hematopoietin_receptor,_single_chain,_conserved_site",
|
| 49 |
+
"IPR003529__long_hematopoietin_receptor,_gp130_family_2,_conserved_site",
|
| 50 |
+
"IPR003530__long_hematopoietin_receptor,_soluble_alpha_chain,_conserved_site",
|
| 51 |
+
"IPR003531__short_hematopoietin_receptor,_family_1,_conserved_site",
|
| 52 |
+
"IPR003532__short_hematopoietin_receptor,_family_2,_conserved_site",
|
| 53 |
+
"IPR003651__endonuclease_iii-like,_iron-sulphur_cluster_loop_motif",
|
| 54 |
+
"IPR003903__ubiquitin_interacting_motif",
|
| 55 |
+
"IPR003960__atpase,_aaa-type,_conserved_site",
|
| 56 |
+
"IPR004001__actin,_conserved_site",
|
| 57 |
+
"IPR004036__endonuclease_iii-like,_conserved_site-2",
|
| 58 |
+
"IPR004037__large_ribosomal_subunit_protein_el8-like,_conserved_site",
|
| 59 |
+
"IPR005108__help_motif",
|
| 60 |
+
"IPR005825__large_ribosomal_subunit_protein_ul24,_conserved_site",
|
| 61 |
+
"IPR005829__sugar_transporter,_conserved_site",
|
| 62 |
+
"IPR006012__syntaxin/epimorphin,_conserved_site",
|
| 63 |
+
"IPR006074__gtp1/obg,_conserved_site",
|
| 64 |
+
"IPR006089__acyl-coa_dehydrogenase,_conserved_site",
|
| 65 |
+
"IPR006117__2-5-oligoadenylate_synthetase,_c-terminal_conserved_site",
|
| 66 |
+
"IPR006180__3-hydroxyacyl-coa_dehydrogenase,_conserved_site",
|
| 67 |
+
"IPR006181__d-amino_acid_oxidase,_conserved_site",
|
| 68 |
+
"IPR006203__ghmp_kinase,_atp-binding,_conserved_site",
|
| 69 |
+
"IPR006224__pseudouridine_synthase,_rlua-like,_conserved_site",
|
| 70 |
+
"IPR006594__lis1_homology_motif",
|
| 71 |
+
"IPR007577__glycosyltransferase,_dxd_sugar-binding_motif",
|
| 72 |
+
"IPR007858__dpy-30_motif",
|
| 73 |
+
"IPR008193__dna-directed_rna_polymerase_rpb11,_13-16kda_subunit,_conserved_site",
|
| 74 |
+
"IPR008918__helix-hairpin-helix_motif,_class_2",
|
| 75 |
+
"IPR009818__pam2_motif",
|
| 76 |
+
"IPR013032__egf-like,_conserved_site",
|
| 77 |
+
"IPR013055__tachykinin/neurokinin-like,_conserved_site",
|
| 78 |
+
"IPR013152__gastrin/cholecystokinin,_conserved_site",
|
| 79 |
+
"IPR013992__adenylate_cyclase-associated_cap,_n-terminal",
|
| 80 |
+
"IPR014034__ferritin,_conserved_site",
|
| 81 |
+
"IPR014762__dna_mismatch_repair,_conserved_site",
|
| 82 |
+
"IPR014783__copper_type_ii,_ascorbate-dependent_monooxygenase,_histidine-cluster-2_conserved_site",
|
| 83 |
+
"IPR015875__imp_dehydrogenase_/_gmp_reductase,_conserved_site",
|
| 84 |
+
"IPR015884__malic_enzyme,_conserved_site",
|
| 85 |
+
"IPR015911__phosphoglycerate_kinase,_conserved_site",
|
| 86 |
+
"IPR015912__phosphofructokinase,_conserved_site",
|
| 87 |
+
"IPR016050__proteasome_beta-type_subunit,_conserved_site",
|
| 88 |
+
"IPR016059__dna_ligase,_atp-dependent,_conserved_site",
|
| 89 |
+
"IPR016066__alpha-d-phosphohexomutase,_conserved_site",
|
| 90 |
+
"IPR016157__cullin,_conserved_site",
|
| 91 |
+
"IPR016160__aldehyde_dehydrogenase,_cysteine_active_site",
|
| 92 |
+
"IPR017864__arrestin,_conserved_site",
|
| 93 |
+
"IPR017865__f-actin_capping_protein,_alpha_subunit,_conserved_site",
|
| 94 |
+
"IPR017866__succinyl-coa_synthetase,_beta_subunit,_conserved_site",
|
| 95 |
+
"IPR017870__fes_cluster_insertion,_c-terminal,_conserved_site",
|
| 96 |
+
"IPR017871__abc_transporter-like,_conserved_site",
|
| 97 |
+
"IPR017891__insulin-like_growth_factor_binding_protein,_n-terminal,_cys-rich_conserved_site",
|
| 98 |
+
"IPR017900__4fe-4s_ferredoxin,_iron-sulphur_binding,_conserved_site",
|
| 99 |
+
"IPR017907__zinc_finger,_ring-type,_conserved_site",
|
| 100 |
+
"IPR017937__thioredoxin,_conserved_site",
|
| 101 |
+
"IPR017948__transforming_growth_factor_beta,_conserved_site",
|
| 102 |
+
"IPR017954__lipid-binding_serum_glycoprotein,_conserved_site",
|
| 103 |
+
"IPR017956__at_hook,_dna-binding_motif",
|
| 104 |
+
"IPR017957__p-type_trefoil,_conserved_site",
|
| 105 |
+
"IPR017967__hmg_box_a_dna-binding_domain,_conserved_site",
|
| 106 |
+
"IPR017968__acylphosphatase,_conserved_site",
|
| 107 |
+
"IPR017970__homeobox,_conserved_site",
|
| 108 |
+
"IPR017972__cytochrome_p450,_conserved_site",
|
| 109 |
+
"IPR017974__claudin,_conserved_site",
|
| 110 |
+
"IPR017975__tubulin,_conserved_site",
|
| 111 |
+
"IPR017977__zona_pellucida_domain,_conserved_site",
|
| 112 |
+
"IPR017979__gpcr,_family_3,_conserved_site",
|
| 113 |
+
"IPR017983__gpcr,_family_2,_secretin-like,_conserved_site",
|
| 114 |
+
"IPR017990__connexin,_conserved_site",
|
| 115 |
+
"IPR018000__neurotransmitter-gated_ion-channel,_conserved_site",
|
| 116 |
+
"IPR018016__nucleoside_phosphorylase,_conserved_site",
|
| 117 |
+
"IPR018038__large_ribosomal_subunit_protein_ul30,_conserved_site",
|
| 118 |
+
"IPR018039__intermediate_filament_protein,_conserved_site",
|
| 119 |
+
"IPR018045__sulphate_anion_transporter,_conserved_site",
|
| 120 |
+
"IPR018048__cxc_chemokine,_conserved_site",
|
| 121 |
+
"IPR018049__interleukin-7/interleukin-9,_conserved_site",
|
| 122 |
+
"IPR018054__chromogranin,_conserved_site",
|
| 123 |
+
"IPR018056__kringle,_conserved_site",
|
| 124 |
+
"IPR018066__tubby,_c-terminal,_conserved_site",
|
| 125 |
+
"IPR018067__protein_phosphatase_2a_regulatory_subunit_pr55,_conserved_site",
|
| 126 |
+
"IPR018073__proteinase_inhibitor_i25,_cystatin,_conserved_site",
|
| 127 |
+
"IPR018080__band_7/stomatin-like,_conserved_site",
|
| 128 |
+
"IPR018083__sterol_reductase,_conserved_site",
|
| 129 |
+
"IPR018091__phosphoenolpyruvate_carboxykinase,_gtp-utilising,_conserved_site",
|
| 130 |
+
"IPR018096__interleukin-4/interleukin-13,_conserved_site",
|
| 131 |
+
"IPR018097__egf-like_calcium-binding,_conserved_site",
|
| 132 |
+
"IPR018099__purine_phosphorylase,_family_2,_conserved_site",
|
| 133 |
+
"IPR018102__small_ribosomal_subunit_protein_us11,_conserved_site",
|
| 134 |
+
"IPR018103__translationally_controlled_tumour_protein,_conserved_site",
|
| 135 |
+
"IPR018104__translation_initiation_factor_1a_(eif-1a),_conserved_site",
|
| 136 |
+
"IPR018106__cap,_conserved_site,_n-terminal",
|
| 137 |
+
"IPR018107__sodium:dicarboxylate_symporter,_conserved_site",
|
| 138 |
+
"IPR018116__somatotropin_hormone,_conserved_site",
|
| 139 |
+
"IPR018122__fork_head_domain_conserved_site1",
|
| 140 |
+
"IPR018124__calreticulin/calnexin,_conserved_site",
|
| 141 |
+
"IPR018130__small_ribosomal_subunit_protein_us2,_conserved_site",
|
| 142 |
+
"IPR018134__lysosome-associated_membrane_glycoprotein,_conserved_site",
|
| 143 |
+
"IPR018161__wnt_protein,_conserved_site",
|
| 144 |
+
"IPR018170__aldo/keto_reductase,_conserved_site",
|
| 145 |
+
"IPR018181__heat_shock_protein_70,_conserved_site",
|
| 146 |
+
"IPR018186__transcription_factor,_t-box,_conserved_site",
|
| 147 |
+
"IPR018192__small_ribosomal_subunit_protein_us5,_n-terminal,_conserved_site",
|
| 148 |
+
"IPR018199__small_ribosomal_subunit_protein_es4,_n-terminal,_conserved_site",
|
| 149 |
+
"IPR018200__ubiquitin_specific_protease,_conserved_site",
|
| 150 |
+
"IPR018207__haem_oxygenase_conserved_site",
|
| 151 |
+
"IPR018212__sodium/solute_symporter,_conserved_site",
|
| 152 |
+
"IPR018228__deoxyribonuclease,_tatd-related,_conserved_site",
|
| 153 |
+
"IPR018233__calsequestrin,_conserved_site",
|
| 154 |
+
"IPR018237__myelin_proteolipid_protein_plp,_conserved_site",
|
| 155 |
+
"IPR018240__clathrin_adaptor,_mu_subunit,_conserved_site",
|
| 156 |
+
"IPR018244__allergen_v5/tpx-1-related,_conserved_site",
|
| 157 |
+
"IPR018245__gonadotropin,_beta_subunit,_conserved_site",
|
| 158 |
+
"IPR018252__annexin_repeat,_conserved_site",
|
| 159 |
+
"IPR018253__dnaj_domain,_conserved_site",
|
| 160 |
+
"IPR018255__large_ribosomal_subunit_protein_ul16,_conserved_site,_eukaryotes/archaea",
|
| 161 |
+
"IPR018295__flap/gst2/ltc4s,_conserved_site",
|
| 162 |
+
"IPR018297__adenylyl_cyclase_class-4/guanylyl_cyclase,_conserved_site",
|
| 163 |
+
"IPR018300__aminotransferase,_class_iv,_conserved_site",
|
| 164 |
+
"IPR018314__rsmb/nol1/nop2-like,_conserved_site",
|
| 165 |
+
"IPR018321__glucosamine-6-phosphate_isomerase,_conserved_site",
|
| 166 |
+
"IPR018338__carbonic_anhydrase,_alpha-class,_conserved_site",
|
| 167 |
+
"IPR018350__transcription_factor_coe,_conserved_site",
|
| 168 |
+
"IPR018357__hexapeptide_transferase,_conserved_site",
|
| 169 |
+
"IPR018358__disintegrin,_conserved_site",
|
| 170 |
+
"IPR018359__bromodomain,_conserved_site",
|
| 171 |
+
"IPR018360__calcitonin,_conserved_site",
|
| 172 |
+
"IPR018361__caveolin,_conserved_site",
|
| 173 |
+
"IPR018363__cd59_antigen,_conserved_site",
|
| 174 |
+
"IPR018376__enoyl-coa_hydratase/isomerase,_conserved_site",
|
| 175 |
+
"IPR018378__c-type_lectin,_conserved_site",
|
| 176 |
+
"IPR018446__corticotropin-releasing_factor_conserved_site",
|
| 177 |
+
"IPR018456__ptr2_family_proton/oligopeptide_symporter,_conserved_site",
|
| 178 |
+
"IPR018483__carbohydrate_kinase,_fggy,_conserved_site",
|
| 179 |
+
"IPR018486__hemopexin,_conserved_site",
|
| 180 |
+
"IPR018488__cyclic_nucleotide-binding,_conserved_site",
|
| 181 |
+
"IPR018494__oxysterol-binding_protein,_conserved_site",
|
| 182 |
+
"IPR018498__peripherin/rom-1,_conserved_site",
|
| 183 |
+
"IPR018503__tetraspanin,_conserved_site",
|
| 184 |
+
"IPR018507__cytochrome_c_oxidase,_subunit_via,_conserved_site",
|
| 185 |
+
"IPR018517__trna-dihydrouridine_synthase,_conserved_site",
|
| 186 |
+
"IPR018525__mini-chromosome_maintenance,_conserved_site",
|
| 187 |
+
"IPR018526__glycoside_hydrolase,_family_29,_conserved_site",
|
| 188 |
+
"IPR018935__rio_kinase,_conserved_site",
|
| 189 |
+
"IPR018936__phosphatidylinositol_3-/4-kinase,_conserved_site",
|
| 190 |
+
"IPR018938__glycophorin,_conserved_site",
|
| 191 |
+
"IPR019041__ssxrd_motif",
|
| 192 |
+
"IPR019735__synapsin,_conserved_site",
|
| 193 |
+
"IPR019737__homeobox_engrailed-type,_conserved_site",
|
| 194 |
+
"IPR019739__ctf_transcription_factor/nuclear_factor_1,_conserved_site",
|
| 195 |
+
"IPR019741__galactokinase,_conserved_site",
|
| 196 |
+
"IPR019744__amyloidogenic_glycoprotein,_copper-binding_domain_conserved_site",
|
| 197 |
+
"IPR019745__amyloidogenic_glycoprotein,_intracellular_domain,_conserved_site",
|
| 198 |
+
"IPR019747__ferm_conserved_site",
|
| 199 |
+
"IPR019758__peptidase_s26a,_signal_peptidase_i,_conserved_site",
|
| 200 |
+
"IPR019761__dna-directed_rna_polymerase_m,_15kda_subunit,_conserved_site",
|
| 201 |
+
"IPR019762__dynamin,_gtpase_region,_conserved_site",
|
| 202 |
+
"IPR019763__dynein_light_chain,_type_1/2,_conserved_site",
|
| 203 |
+
"IPR019764__endothelin-like_toxin,_conserved_site",
|
| 204 |
+
"IPR019765__ephrin,_conserved_site",
|
| 205 |
+
"IPR019767__erythropoietin/thrombopoeitin,_conserved_site",
|
| 206 |
+
"IPR019770__eukaryotic_translation_initiation_factor_4e_(eif-4e),_conserved_site",
|
| 207 |
+
"IPR019775__wd40_repeat,_conserved_site",
|
| 208 |
+
"IPR019786__zinc_finger,_phd-type,_conserved_site",
|
| 209 |
+
"IPR019801__glycoside_hydrolase,_family_35,_conserved_site",
|
| 210 |
+
"IPR019803__glypican,_conserved_site",
|
| 211 |
+
"IPR019804__ras_guanine-nucleotide_exchange_factor,_conserved_site",
|
| 212 |
+
"IPR019805__heat_shock_protein_hsp90,_conserved_site",
|
| 213 |
+
"IPR019808__histidine_triad,_conserved_site",
|
| 214 |
+
"IPR019817__interferon_regulatory_factor,_conserved_site",
|
| 215 |
+
"IPR019818__isocitrate/isopropylmalate_dehydrogenase,_conserved_site",
|
| 216 |
+
"IPR019819__carboxylesterase_type_b,_conserved_site",
|
| 217 |
+
"IPR019821__kinesin_motor_domain,_conserved_site",
|
| 218 |
+
"IPR019827__leukemia_inhibitory_factor_/oncostatin,_conserved_site",
|
| 219 |
+
"IPR019828__lysyl_oxidase,_conserved_site",
|
| 220 |
+
"IPR019829__macrophage_migration_inhibitory_factor,_conserved_site",
|
| 221 |
+
"IPR019844__cold-shock_domain,_conserved_site",
|
| 222 |
+
"IPR019846__nerve_growth_factor_conserved_site",
|
| 223 |
+
"IPR019926__large_ribosomal_subunit_protein_ul3,_conserved_site",
|
| 224 |
+
"IPR019954__ubiquitin_conserved_site",
|
| 225 |
+
"IPR019974__xpg_conserved_site",
|
| 226 |
+
"IPR020082__s-adenosyl-l-homocysteine_hydrolase,_conserved_site",
|
| 227 |
+
"IPR020083__large_ribosomal_subunit_protein_el39,_conserved_site",
|
| 228 |
+
"IPR020084__nudix_hydrolase,_conserved_site",
|
| 229 |
+
"IPR020092__pleiotrophin/midkine_heparin-binding_growth_factor,_conserved_site",
|
| 230 |
+
"IPR020392__pancreatic_hormone-like,_conserved_site",
|
| 231 |
+
"IPR020423__interleukin-10,_conserved_site",
|
| 232 |
+
"IPR020550__inositol_monophosphatase,_conserved_site",
|
| 233 |
+
"IPR020556__amidase,_conserved_site",
|
| 234 |
+
"IPR020557__fumarate_lyase,_conserved_site",
|
| 235 |
+
"IPR020574__small_ribosomal_subunit_protein_us9,_conserved_site",
|
| 236 |
+
"IPR020590__guanylate_kinase,_conserved_site",
|
| 237 |
+
"IPR020596__ribosomal_rna_adenine_methylase_transferase,_conserved_site",
|
| 238 |
+
"IPR020611__copper_type_ii,_ascorbate-dependent_monooxygenase,_histidine-cluster-1_conserved_site",
|
| 239 |
+
"IPR020612__methylthiotransferase,_conserved_site",
|
| 240 |
+
"IPR020613__thiolase,_conserved_site",
|
| 241 |
+
"IPR020628__formate-tetrahydrofolate_ligase,_fthfs,_conserved_site",
|
| 242 |
+
"IPR020717__apoptosis_regulator,_bcl-2,_bh1_motif,_conserved_site",
|
| 243 |
+
"IPR020719__rna_3'-terminal_phosphate_cyclase-like,_conserved_site",
|
| 244 |
+
"IPR020726__apoptosis_regulator,_bcl-2,_bh2_motif,_conserved_site",
|
| 245 |
+
"IPR020728__apoptosis_regulator,_bcl-2,_bh3_motif,_conserved_site",
|
| 246 |
+
"IPR020731__apoptosis_regulator,_bcl-2,_bh4_motif,_conserved_site",
|
| 247 |
+
"IPR020809__enolase,_conserved_site",
|
| 248 |
+
"IPR020813__fibrillarin,_conserved_site",
|
| 249 |
+
"IPR020834__lipoxygenase,_conserved_site",
|
| 250 |
+
"IPR020837__fibrinogen,_conserved_site",
|
| 251 |
+
"IPR020845__amp-binding,_conserved_site",
|
| 252 |
+
"IPR020857__serum_albumin,_conserved_site",
|
| 253 |
+
"IPR020863__membrane_attack_complex_component/perforin_domain,_conserved_site",
|
| 254 |
+
"IPR020867__tetrahydrofolate_dehydrogenase/cyclohydrolase,_conserved_site",
|
| 255 |
+
"IPR020877__interleukin-1_conserved_site",
|
| 256 |
+
"IPR020892__cyclophilin-type_peptidyl-prolyl_cis-trans_isomerase,_conserved_site",
|
| 257 |
+
"IPR020894__cadherin_conserved_site",
|
| 258 |
+
"IPR020901__proteinase_inhibitor_i2,_kunitz,_conserved_site",
|
| 259 |
+
"IPR020902__actin/actin-like_conserved_site",
|
| 260 |
+
"IPR020903__epithelial_sodium_channel,_conserved_site",
|
| 261 |
+
"IPR020904__short-chain_dehydrogenase/reductase,_conserved_site",
|
| 262 |
+
"IPR021184__tumour_necrosis_factor,_conserved_site",
|
| 263 |
+
"IPR021939__kank_n-terminal_motif",
|
| 264 |
+
"IPR022272__lipocalin_family_conserved_site",
|
| 265 |
+
"IPR022353__insulin,_conserved_site",
|
| 266 |
+
"IPR022357__major_intrinsic_protein,_conserved_site",
|
| 267 |
+
"IPR022408__acyl-coa-binding_protein,_acbp,_conserved_site",
|
| 268 |
+
"IPR022423__neurohypophysial_hormone,_conserved_site",
|
| 269 |
+
"IPR022631__s-adenosylmethionine_synthetase,_conserved_site",
|
| 270 |
+
"IPR022657__orn/dap/arg_decarboxylase_2,_conserved_site",
|
| 271 |
+
"IPR022678__glycylpeptide_n-tetradecanoyltransferase,_conserved_site",
|
| 272 |
+
"IPR022966__ribonuclease_ii/r,_conserved_site",
|
| 273 |
+
"IPR023152__ras_gtpase-activating_protein,_conserved_site",
|
| 274 |
+
"IPR023174__3'5'-cyclic_nucleotide_phosphodiesterase,_conserved_site",
|
| 275 |
+
"IPR023409__14-3-3_protein,_conserved_site",
|
| 276 |
+
"IPR023415__low-density_lipoprotein_(ldl)_receptor_class_a,_conserved_site",
|
| 277 |
+
"IPR023442__large_ribosomal_subunit_protein_el24,_conserved_site",
|
| 278 |
+
"IPR023563__large_ribosomal_subunit_protein_ul13,_conserved_site",
|
| 279 |
+
"IPR023576__ubie/coq5_methyltransferase,_conserved_site",
|
| 280 |
+
"IPR023581__platelet-derived_growth_factor,_conserved_site",
|
| 281 |
+
"IPR023779__chromo_domain,_conserved_site",
|
| 282 |
+
"IPR023795__serpin,_conserved_site",
|
| 283 |
+
"IPR024607__sulfatase,_conserved_site",
|
| 284 |
+
"IPR025820__methyltransferase_nnmt/pnmt/temt,_conserved_site",
|
| 285 |
+
"IPR027310__profilin_conserved_site",
|
| 286 |
+
"IPR028322__proline-rich_nuclear_receptor_coactivator-like,_proline_rich_region",
|
| 287 |
+
"IPR028417__cap,_conserved_site,_c-terminal",
|
| 288 |
+
"IPR029162__trp-interacting_helix,_inaf_motif",
|
| 289 |
+
"IPR029510__aldehyde_dehydrogenase,_glutamic_acid_active_site",
|
| 290 |
+
"IPR029752__d-isomer_specific_2-hydroxyacid_dehydrogenase,_nad-binding_domain_conserved_site_1",
|
| 291 |
+
"IPR029753__d-isomer_specific_2-hydroxyacid_dehydrogenase,_nad-binding_domain_conserved_site",
|
| 292 |
+
"IPR029760__glutathione_peroxidase_conserved_site",
|
| 293 |
+
"IPR029768__fructose-bisphosphate_aldolase_class-i_active_site",
|
| 294 |
+
"IPR030373__polyamine_biosynthesis_domain,_conserved_site",
|
| 295 |
+
"IPR030456__fork_head_domain_conserved_site_2",
|
| 296 |
+
"IPR030457__elo_family,_conserved_site",
|
| 297 |
+
"IPR030459__glycosyl_hydrolases_family_31,_conserved_site",
|
| 298 |
+
"IPR030470__ubia_prenyltransferase_conserved_site",
|
| 299 |
+
"IPR030473__interleukin-6/gcsf/mgf,_conserved_site",
|
| 300 |
+
"IPR030476__pentaxin,_conserved_site",
|
| 301 |
+
"IPR030479__syndecan,_conserved_site",
|
| 302 |
+
"IPR030480__natriuretic_peptide,_conserved_site",
|
| 303 |
+
"IPR030490__tissue_inhibitor_of_metalloproteinase,_conserved_site",
|
| 304 |
+
"IPR030491__tata-box_binding_protein,_conserved_site",
|
| 305 |
+
"IPR030492__rel_homology_domain,_conserved_site",
|
| 306 |
+
"IPR030514__stathmin,_conserved_site",
|
| 307 |
+
"IPR030659__secy_conserved_site",
|
| 308 |
+
"IPR031157__tr-type_g_domain,_conserved_site",
|
| 309 |
+
"IPR031305__casein_alpha/beta,_conserved_site",
|
| 310 |
+
"IPR031312__sodium/sulphate_symporter,_conserved_site",
|
| 311 |
+
"IPR032458__histone_h2a_conserved_site",
|
| 312 |
+
"IPR033125__deoxyribonuclease_i,_conservied_site",
|
| 313 |
+
"IPR033132__glycosyl_hydrolases_family_1,_n-terminal_conserved_site",
|
| 314 |
+
"IPR033466__cornichon,_conserved_site",
|
| 315 |
+
"IPR033690__adenylate_kinase,_conserved_site",
|
| 316 |
+
"IPR033749__polyprenyl_synthetase,_conserved_site",
|
| 317 |
+
"IPR033773__cbx_family_c-terminal_motif",
|
| 318 |
+
"IPR033774__yaf2/rybp_c-terminal_binding_motif",
|
| 319 |
+
"IPR035090__phosphorylase_pyridoxal-phosphate_attachment_site",
|
| 320 |
+
"IPR035595__udp-glycosyltransferase_family,_conserved_site",
|
| 321 |
+
"IPR043518__2-5-oligoadenylate_synthetase,_n-terminal_conserved_site",
|
| 322 |
+
"IPR043937__golgin_subfamily_a_,_c-terminal_binding_motif",
|
| 323 |
+
"IPR045668__fhf_complex_subunit_hook-interacting_protein,_kelaa_motif",
|
| 324 |
+
"IPR046790__kbtb,_w-type_lir_motif",
|
| 325 |
+
"IPR046793__cysteine_protease_atg4,_f-type_lir_motif",
|
| 326 |
+
"IPR047297__ion-transport_regulator,_fxyd_motif",
|
| 327 |
+
"IPR047862__tsc22/bun,_conserved_site",
|
| 328 |
+
"IPR047864__ribosomal_protein_es26,_conserved_site",
|
| 329 |
+
"IPR048254__cdp-alcohol_phosphatidyltransferase,_conserved_site",
|
| 330 |
+
"IPR048258__cyclins,_cyclin-box",
|
| 331 |
+
"IPR048559__disabled_homolog_1/2,_sulfatide-binding_motif",
|
| 332 |
+
"IPR049704__aminotransferases_class-iii_pyridoxal-phosphate_attachment_site",
|
| 333 |
+
"IPR049947__copper_amine_oxidase,_copper-binding_site",
|
| 334 |
+
"IPR049948__copper_amine_oxidase,_tpq-binding_site",
|
| 335 |
+
"IPR053790__pyrroline-5-carboxylate_reductase-like_conserved_site",
|
| 336 |
+
"IPR053792__atp_p2x_receptor,_conserved_site",
|
| 337 |
+
"IPR053819__tead_interacting_region_3,_omega_loop",
|
| 338 |
+
"IPR055262__gamma-glutamyltranspeptidase,_conserved_site",
|
| 339 |
+
"IPR055333__histone_h2b,_conserved_site",
|
| 340 |
+
"IPR057254__ubiquitin_carboxyl-terminal_hydrolase_family_1,_cysteine_active-site"
|
| 341 |
+
],
|
| 342 |
+
"rows": {
|
| 343 |
+
"train": 2062,
|
| 344 |
+
"validation": 450,
|
| 345 |
+
"test": 436
|
| 346 |
+
},
|
| 347 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_conserved_site_clustersplit_30_50.parquet.gz",
|
| 348 |
+
"licence": "CC BY 4.0"
|
| 349 |
+
}
|
interpro_conserved_site/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:43daba6fe51732a2418d30afa14d78221b5f89af2334403eff8149b15a185dae
|
| 3 |
+
size 193252
|
interpro_conserved_site/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:98c75e40bb3bd586b3090e6efd7202367c838d4ce7057d74259b6532ec6593ed
|
| 3 |
+
size 987116
|
interpro_conserved_site/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:55d060f67beb0c2192d220e60ef75e518c08a5ac2360bceb6f903ed484668bcd
|
| 3 |
+
size 216484
|
interpro_domain/metadata.json
ADDED
|
@@ -0,0 +1,379 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_domain",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 364,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000008__c2_domain",
|
| 8 |
+
"IPR000014__pas_domain",
|
| 9 |
+
"IPR000072__pdgf/vegf_domain",
|
| 10 |
+
"IPR000073__alpha/beta_hydrolase_fold-1",
|
| 11 |
+
"IPR000086__nudix_hydrolase_domain",
|
| 12 |
+
"IPR000095__crib_domain",
|
| 13 |
+
"IPR000157__toll/interleukin-1_receptor_homology_(tir)_domain",
|
| 14 |
+
"IPR000159__ras-associating_domain",
|
| 15 |
+
"IPR000182__gnat_domain",
|
| 16 |
+
"IPR000195__rab-gap-tbc_domain",
|
| 17 |
+
"IPR000210__btb/poz_domain",
|
| 18 |
+
"IPR000219__dbl_homology_domain",
|
| 19 |
+
"IPR000232__heat_shock_factor_(hsf)-type,_dna-binding",
|
| 20 |
+
"IPR000242__tyrosine-specific_protein_phosphatase,_ptpase_domain",
|
| 21 |
+
"IPR000253__forkhead-associated_(fha)_domain",
|
| 22 |
+
"IPR000294__gamma-carboxyglutamic_acid-rich_(gla)_domain",
|
| 23 |
+
"IPR000299__ferm_domain",
|
| 24 |
+
"IPR000306__fyve_zinc_finger",
|
| 25 |
+
"IPR000315__b-box-type_zinc_finger",
|
| 26 |
+
"IPR000326__phosphatidic_acid_phosphatase_type_2/haloperoxidase",
|
| 27 |
+
"IPR000330__snf2,_n-terminal",
|
| 28 |
+
"IPR000340__dual_specificity_phosphatase,_catalytic_domain",
|
| 29 |
+
"IPR000372__leucine-rich_repeat_n-terminal_domain",
|
| 30 |
+
"IPR000387__tyrosine-specific_protein_phosphatases_domain",
|
| 31 |
+
"IPR000418__ets_domain",
|
| 32 |
+
"IPR000433__zinc_finger,_zz-type",
|
| 33 |
+
"IPR000436__sushi/scr/ccp_domain",
|
| 34 |
+
"IPR000467__g-patch_domain",
|
| 35 |
+
"IPR000483__cysteine-rich_flanking_region,_c-terminal",
|
| 36 |
+
"IPR000488__death_domain",
|
| 37 |
+
"IPR000504__rna_recognition_motif_domain",
|
| 38 |
+
"IPR000532__glucagon/gip/secretin/vip",
|
| 39 |
+
"IPR000535__major_sperm_protein_(msp)_domain",
|
| 40 |
+
"IPR000536__nuclear_hormone_receptor,_ligand-binding_domain",
|
| 41 |
+
"IPR000555__jab1/mpn/mov34_metalloenzyme_domain",
|
| 42 |
+
"IPR000566__lipocalin/cytosolic_fatty-acid_binding_domain",
|
| 43 |
+
"IPR000569__hect_domain",
|
| 44 |
+
"IPR000571__zinc_finger,_ccch-type",
|
| 45 |
+
"IPR000582__acyl-coa-binding_protein,_acbp",
|
| 46 |
+
"IPR000585__hemopexin-like_domain",
|
| 47 |
+
"IPR000608__ubiquitin-conjugating_(ubc),_catalytic_core_domain",
|
| 48 |
+
"IPR000626__ubiquitin-like_domain",
|
| 49 |
+
"IPR000644__cbs_domain",
|
| 50 |
+
"IPR000651__ras-like_guanine_nucleotide_exchange_factor,_n-terminal",
|
| 51 |
+
"IPR000690__matrin/u1-c,_c2h2-type_zinc_finger",
|
| 52 |
+
"IPR000717__proteasome_component_(pci)_domain",
|
| 53 |
+
"IPR000719__protein_kinase_domain",
|
| 54 |
+
"IPR000727__target_snare_coiled-coil_homology_domain",
|
| 55 |
+
"IPR000742__egf-like_domain",
|
| 56 |
+
"IPR000772__ricin_b,_lectin_domain",
|
| 57 |
+
"IPR000859__cub_domain",
|
| 58 |
+
"IPR000863__sulfotransferase_domain",
|
| 59 |
+
"IPR000873__amp-dependent_synthetase/ligase_domain",
|
| 60 |
+
"IPR000909__phosphatidylinositol-specific_phospholipase_c,_x_domain",
|
| 61 |
+
"IPR000953__chromo/chromo_shadow_domain",
|
| 62 |
+
"IPR000961__agc-kinase,_c-terminal",
|
| 63 |
+
"IPR000980__sh2_domain",
|
| 64 |
+
"IPR001005__sant/myb_domain",
|
| 65 |
+
"IPR001039__mhc_class_i_alpha_chain,_alpha1_alpha2_domains",
|
| 66 |
+
"IPR001064__beta/gamma_crystallin",
|
| 67 |
+
"IPR001107__band_7_domain",
|
| 68 |
+
"IPR001111__tgf-beta,_propeptide",
|
| 69 |
+
"IPR001124__lipid-binding_serum_glycoprotein,_c-terminal",
|
| 70 |
+
"IPR001148__alpha_carbonic_anhydrase_domain",
|
| 71 |
+
"IPR001163__sm_domain,_eukaryotic/archaea-type",
|
| 72 |
+
"IPR001164__arf_gtpase_activating_protein",
|
| 73 |
+
"IPR001173__glycosyltransferase_2-like",
|
| 74 |
+
"IPR001202__ww_domain",
|
| 75 |
+
"IPR001206__diacylglycerol_kinase,_catalytic_domain",
|
| 76 |
+
"IPR001212__somatomedin_b_domain",
|
| 77 |
+
"IPR001214__set_domain",
|
| 78 |
+
"IPR001245__serine-threonine/tyrosine-protein_kinase,_catalytic_domain",
|
| 79 |
+
"IPR001247__exoribonuclease,_phosphorolytic_domain_1",
|
| 80 |
+
"IPR001251__cral-trio_lipid_binding_domain",
|
| 81 |
+
"IPR001279__metallo-beta-lactamase",
|
| 82 |
+
"IPR001293__zinc_finger,_traf-type",
|
| 83 |
+
"IPR001296__glycosyl_transferase,_family_1",
|
| 84 |
+
"IPR001304__c-type_lectin-like",
|
| 85 |
+
"IPR001309__peptidase_c14,_p20_domain",
|
| 86 |
+
"IPR001315__card_domain",
|
| 87 |
+
"IPR001356__homeodomain",
|
| 88 |
+
"IPR001357__brct_domain",
|
| 89 |
+
"IPR001365__adenosine_deaminase_domain",
|
| 90 |
+
"IPR001368__tnfr/ngfr_cysteine-rich_region",
|
| 91 |
+
"IPR001394__peptidase_c19,_ubiquitin_carboxyl-terminal_hydrolase",
|
| 92 |
+
"IPR001452__sh3_domain",
|
| 93 |
+
"IPR001478__pdz_domain",
|
| 94 |
+
"IPR001494__importin-beta,_n-terminal_domain",
|
| 95 |
+
"IPR001507__zona_pellucida_domain",
|
| 96 |
+
"IPR001565__synaptotagmin",
|
| 97 |
+
"IPR001594__palmitoyltransferase,_dhhc_domain",
|
| 98 |
+
"IPR001607__zinc_finger,_ubp-type",
|
| 99 |
+
"IPR001623__dnaj_domain",
|
| 100 |
+
"IPR001628__zinc_finger,_nuclear_hormone_receptor-type",
|
| 101 |
+
"IPR001650__helicase,_c-terminal_domain-like",
|
| 102 |
+
"IPR001660__sterile_alpha_motif_domain",
|
| 103 |
+
"IPR001683__phox_homology",
|
| 104 |
+
"IPR001715__calponin_homology_domain",
|
| 105 |
+
"IPR001739__methyl-cpg_dna_binding",
|
| 106 |
+
"IPR001752__kinesin_motor_domain",
|
| 107 |
+
"IPR001763__rhodanese-like_domain",
|
| 108 |
+
"IPR001766__fork_head_domain",
|
| 109 |
+
"IPR001781__zinc_finger,_lim-type",
|
| 110 |
+
"IPR001810__f-box_domain",
|
| 111 |
+
"IPR001811__chemokine_interleukin-8-like_domain",
|
| 112 |
+
"IPR001818__peptidase_m10,_metallopeptidase",
|
| 113 |
+
"IPR001839__transforming_growth_factor-beta,_c-terminal",
|
| 114 |
+
"IPR001841__zinc_finger,_ring-type",
|
| 115 |
+
"IPR001849__pleckstrin_homology_domain",
|
| 116 |
+
"IPR001870__b30.2/spry_domain",
|
| 117 |
+
"IPR001878__zinc_finger,_cchc-type",
|
| 118 |
+
"IPR001881__egf-like_calcium-binding_domain",
|
| 119 |
+
"IPR001895__ras_guanine-nucleotide_exchange_factors_catalytic_domain",
|
| 120 |
+
"IPR001909__krueppel-associated_box",
|
| 121 |
+
"IPR001932__ppm-type_phosphatase-like_domain",
|
| 122 |
+
"IPR001965__zinc_finger,_phd-type",
|
| 123 |
+
"IPR002014__vhs_domain",
|
| 124 |
+
"IPR002018__carboxylesterase,_type_b",
|
| 125 |
+
"IPR002035__von_willebrand_factor,_type_a",
|
| 126 |
+
"IPR002048__ef-hand_domain",
|
| 127 |
+
"IPR002058__pap/25a-associated",
|
| 128 |
+
"IPR002068__alpha_crystallin/hsp20_domain",
|
| 129 |
+
"IPR002073__3'5'-cyclic_nucleotide_phosphodiesterase,_catalytic_domain",
|
| 130 |
+
"IPR002123__phospholipid/glycerol_acyltransferase",
|
| 131 |
+
"IPR002125__cytidine_and_deoxycytidylate_deaminase_domain",
|
| 132 |
+
"IPR002126__cadherin-like",
|
| 133 |
+
"IPR002138__peptidase_c14,_caspase_non-catalytic_subunit_p10",
|
| 134 |
+
"IPR002219__protein_kinase_c-like,_phorbol_ester/diacylglycerol-binding_domain",
|
| 135 |
+
"IPR002314__aminoacyl-trna_synthetase,_class_ii_(g/_p/_s/t)",
|
| 136 |
+
"IPR002350__kazal_domain",
|
| 137 |
+
"IPR002498__phosphatidylinositol-4-phosphate_4/5-kinase,_core",
|
| 138 |
+
"IPR002562__3'-5'_exonuclease_domain",
|
| 139 |
+
"IPR002589__macro_domain",
|
| 140 |
+
"IPR002645__stas_domain",
|
| 141 |
+
"IPR002867__ibr_domain",
|
| 142 |
+
"IPR002893__zinc_finger,_mynd-type",
|
| 143 |
+
"IPR002913__start_domain",
|
| 144 |
+
"IPR002931__transglutaminase-like",
|
| 145 |
+
"IPR003029__s1_domain",
|
| 146 |
+
"IPR003103__bag_domain",
|
| 147 |
+
"IPR003112__olfactomedin-like_domain",
|
| 148 |
+
"IPR003124__wh2_domain",
|
| 149 |
+
"IPR003137__pa_domain",
|
| 150 |
+
"IPR003172__md-2-related_lipid-recognition_domain",
|
| 151 |
+
"IPR003309__scan_domain",
|
| 152 |
+
"IPR003316__e2f/dp_family,_winged-helix_dna-binding_domain",
|
| 153 |
+
"IPR003323__otu_domain",
|
| 154 |
+
"IPR003347__jmjc_domain",
|
| 155 |
+
"IPR003439__abc_transporter-like,_atp-binding_domain",
|
| 156 |
+
"IPR003533__doublecortin_domain",
|
| 157 |
+
"IPR003593__aaa+_atpase_domain",
|
| 158 |
+
"IPR003595__protein-tyrosine_phosphatase,_catalytic",
|
| 159 |
+
"IPR003597__immunoglobulin_c1-set",
|
| 160 |
+
"IPR003598__immunoglobulin_subtype_2",
|
| 161 |
+
"IPR003599__immunoglobulin_domain_subtype",
|
| 162 |
+
"IPR003604__matrin/u1-c-like,_c2h2-type_zinc_finger",
|
| 163 |
+
"IPR003607__hd/pdease_domain",
|
| 164 |
+
"IPR003617__transcription_elongation_factor,_tfiis/crsp70,_n-terminal,_sub-type",
|
| 165 |
+
"IPR003618__transcription_elongation_factor_s-ii,_central_domain",
|
| 166 |
+
"IPR003645__follistatin-like,_n-terminal",
|
| 167 |
+
"IPR003649__b-box,_c-terminal",
|
| 168 |
+
"IPR003650__orange_domain",
|
| 169 |
+
"IPR003654__oar_domain",
|
| 170 |
+
"IPR003877__spry_domain",
|
| 171 |
+
"IPR003879__butyrophylin-like,_spry_domain",
|
| 172 |
+
"IPR003887__lem_domain",
|
| 173 |
+
"IPR003890__mif4g-like,_type_3",
|
| 174 |
+
"IPR003891__initiation_factor_eif-4_gamma,_ma3",
|
| 175 |
+
"IPR003892__ubiquitin_system_component_cue",
|
| 176 |
+
"IPR003954__rna_recognition_motif_domain,_eukaryotic-type",
|
| 177 |
+
"IPR003958__transcription_factor_cbf/nf-y/archaeal_histone_domain",
|
| 178 |
+
"IPR003959__atpase,_aaa-type,_core",
|
| 179 |
+
"IPR003961__fibronectin_type_iii",
|
| 180 |
+
"IPR004012__run_domain",
|
| 181 |
+
"IPR004043__lccl_domain",
|
| 182 |
+
"IPR004045__glutathione_s-transferase,_n-terminal",
|
| 183 |
+
"IPR004046__glutathione_s-transferase,_c-terminal",
|
| 184 |
+
"IPR004087__k_homology_domain",
|
| 185 |
+
"IPR004088__k_homology_domain,_type_1",
|
| 186 |
+
"IPR004113__fad-binding_oxidoreductase/transferase,_type_4,_c-terminal",
|
| 187 |
+
"IPR004182__gram_domain",
|
| 188 |
+
"IPR004217__tim10-like",
|
| 189 |
+
"IPR004364__aminoacyl-trna_synthetase,_class_ii_(d/k/n)",
|
| 190 |
+
"IPR004365__ob-fold_nucleic_acid_binding_domain,_aa-trna_synthetase-type",
|
| 191 |
+
"IPR004367__cyclin,_c-terminal_domain",
|
| 192 |
+
"IPR004826__basic_leucine_zipper_domain,_maf-type",
|
| 193 |
+
"IPR004827__basic-leucine_zipper_domain",
|
| 194 |
+
"IPR004853__sugar_phosphate_transporter_domain",
|
| 195 |
+
"IPR005036__cbm21_(carbohydrate_binding_type-21)_domain",
|
| 196 |
+
"IPR005123__oxoglutarate/iron-dependent_dioxygenase_domain",
|
| 197 |
+
"IPR005135__endonuclease/exonuclease/phosphatase",
|
| 198 |
+
"IPR005225__small_gtp-binding_domain",
|
| 199 |
+
"IPR005576__rna_polymerase_rpb7-like_,_n-terminal",
|
| 200 |
+
"IPR005821__ion_transport_domain",
|
| 201 |
+
"IPR006011__syntaxin,_n-terminal_domain",
|
| 202 |
+
"IPR006020__ptb/pi_domain",
|
| 203 |
+
"IPR006026__peptidase,_metallopeptidase",
|
| 204 |
+
"IPR006052__tumour_necrosis_factor_domain",
|
| 205 |
+
"IPR006073__gtp_binding_domain",
|
| 206 |
+
"IPR006094__fad_linked_oxidase,_n-terminal",
|
| 207 |
+
"IPR006195__aminoacyl-trna_synthetase,_class_ii",
|
| 208 |
+
"IPR006208__glycoprotein_hormone_subunit_beta",
|
| 209 |
+
"IPR006574__spry-associated",
|
| 210 |
+
"IPR006575__rwd_domain",
|
| 211 |
+
"IPR006620__prolyl_4-hydroxylase,_alpha_subunit",
|
| 212 |
+
"IPR006634__tram/lag1/cln8_homology_domain",
|
| 213 |
+
"IPR006640__sprt-like",
|
| 214 |
+
"IPR006642__rad18,_zinc_finger_ubz4-type",
|
| 215 |
+
"IPR006671__cyclin,_n-terminal",
|
| 216 |
+
"IPR006680__amidohydrolase-related",
|
| 217 |
+
"IPR006694__fatty_acid_hydroxylase",
|
| 218 |
+
"IPR006861__hyaluronan/mrna-binding_protein",
|
| 219 |
+
"IPR006909__rad21/rec8-like_protein,_c-terminal,_eukaryotic",
|
| 220 |
+
"IPR006910__rad21/rec8-like_protein,_n-terminal",
|
| 221 |
+
"IPR007052__cs_domain",
|
| 222 |
+
"IPR007110__immunoglobulin-like_domain",
|
| 223 |
+
"IPR007330__mit_domain",
|
| 224 |
+
"IPR007527__zinc_finger,_swim-type",
|
| 225 |
+
"IPR007529__zinc_finger,_hit-type",
|
| 226 |
+
"IPR008174__galanin",
|
| 227 |
+
"IPR008197__wap-type_'four-disulfide_core'_domain",
|
| 228 |
+
"IPR008422__kn_homeodomain",
|
| 229 |
+
"IPR010513__ken_domain",
|
| 230 |
+
"IPR010569__myotubularin-like,_phosphatase_domain",
|
| 231 |
+
"IPR010909__plac",
|
| 232 |
+
"IPR010987__glutathione_s-transferase,_c-terminal-like",
|
| 233 |
+
"IPR011016__zinc_finger,_ring-ch-type",
|
| 234 |
+
"IPR011072__hr1_rho-binding_domain",
|
| 235 |
+
"IPR011124__zinc_finger,_cw-type",
|
| 236 |
+
"IPR011161__mhc_class_i-like_antigen_recognition-like",
|
| 237 |
+
"IPR011545__dead/deah-box_helicase_domain",
|
| 238 |
+
"IPR011547__slc26a/sulp_transporter_domain",
|
| 239 |
+
"IPR011598__myc-type,_basic_helix-loop-helix_(bhlh)_domain",
|
| 240 |
+
"IPR011600__peptidase_c14,_caspase_domain",
|
| 241 |
+
"IPR011611__carbohydrate_kinase_pfkb",
|
| 242 |
+
"IPR011650__peptidase_m20,_dimerisation_domain",
|
| 243 |
+
"IPR012319__formamidopyrimidine-dna_glycosylase,_catalytic_domain",
|
| 244 |
+
"IPR013087__zinc_finger_c2h2-type",
|
| 245 |
+
"IPR013098__immunoglobulin_i-set",
|
| 246 |
+
"IPR013099__potassium_channel_domain",
|
| 247 |
+
"IPR013106__immunoglobulin_v-set_domain",
|
| 248 |
+
"IPR013137__zinc_finger,_tfiib-type",
|
| 249 |
+
"IPR013151__immunoglobulin-like_beta-sandwich_domain",
|
| 250 |
+
"IPR013162__cd80-like,_immunoglobulin_c2-set",
|
| 251 |
+
"IPR013164__cadherin,_n-terminal",
|
| 252 |
+
"IPR013216__methyltransferase_type_11",
|
| 253 |
+
"IPR013520__ribonuclease_h-like_domain",
|
| 254 |
+
"IPR013568__sefir_domain",
|
| 255 |
+
"IPR013655__pas_fold-3",
|
| 256 |
+
"IPR013763__cyclin-like_domain",
|
| 257 |
+
"IPR013766__thioredoxin_domain",
|
| 258 |
+
"IPR013767__pas_fold",
|
| 259 |
+
"IPR014001__helicase_superfamily_1/2,_atp-binding_domain",
|
| 260 |
+
"IPR014014__rna_helicase,_dead-box_type,_q_motif",
|
| 261 |
+
"IPR014020__tensin_phosphatase,_c2_domain",
|
| 262 |
+
"IPR014044__cap_domain",
|
| 263 |
+
"IPR014720__double-stranded_rna-binding_domain",
|
| 264 |
+
"IPR015338__glycosyl_transferase_64_domain",
|
| 265 |
+
"IPR015369__follistatin/osteonectin_egf_domain",
|
| 266 |
+
"IPR015590__aldehyde_dehydrogenase_domain",
|
| 267 |
+
"IPR015847__exoribonuclease,_phosphorolytic_domain_2",
|
| 268 |
+
"IPR015886__formamidopyrimidine-dna_glycosylase,_h2th_dna-binding",
|
| 269 |
+
"IPR015898__g-protein,_gamma_subunit-like_domain",
|
| 270 |
+
"IPR015917__peptidase_c14a,_caspase_catalytic_domain",
|
| 271 |
+
"IPR015940__ubiquitin-associated_domain",
|
| 272 |
+
"IPR016040__nad(p)-binding_domain",
|
| 273 |
+
"IPR016054__ly-6_antigen/upa_receptor-like",
|
| 274 |
+
"IPR016137__rgs_domain",
|
| 275 |
+
"IPR016166__fad-binding_domain,_pcmh-type",
|
| 276 |
+
"IPR016179__insulin-like",
|
| 277 |
+
"IPR016201__psi_domain",
|
| 278 |
+
"IPR017452__gpcr,_rhodopsin-like,_7tm",
|
| 279 |
+
"IPR017455__zinc_finger,_fyve-related",
|
| 280 |
+
"IPR017884__sant_domain",
|
| 281 |
+
"IPR017892__protein_kinase,_c-terminal",
|
| 282 |
+
"IPR017896__4fe-4s_ferredoxin-type,_iron-sulphur_binding_domain",
|
| 283 |
+
"IPR017920__comm_domain",
|
| 284 |
+
"IPR017923__transcription_factor_iis,_n-terminal",
|
| 285 |
+
"IPR017942__lipid-binding_serum_glycoprotein,_n-terminal",
|
| 286 |
+
"IPR017981__gpcr,_family_2-like,_7tm",
|
| 287 |
+
"IPR018484__carbohydrate_kinase_fggy,_n-terminal",
|
| 288 |
+
"IPR018957__zinc_finger,_c3hc4_ring-type",
|
| 289 |
+
"IPR018979__ferm,_n-terminal",
|
| 290 |
+
"IPR018980__ferm,_c-terminal_ph-like_domain",
|
| 291 |
+
"IPR019339__cbf1-interacting_co-repressor_cir,_n-terminal_domain",
|
| 292 |
+
"IPR019383__golgin_subfamily_a_member_7/erf4",
|
| 293 |
+
"IPR019748__ferm_central_domain",
|
| 294 |
+
"IPR019749__band_4.1_domain",
|
| 295 |
+
"IPR019787__zinc_finger,_phd-finger",
|
| 296 |
+
"IPR020067__frizzled_domain",
|
| 297 |
+
"IPR020422__dual_specificity_protein_phosphatase_domain",
|
| 298 |
+
"IPR020479__homeodomain,_metazoa",
|
| 299 |
+
"IPR020635__tyrosine-protein_kinase,_catalytic_domain",
|
| 300 |
+
"IPR020846__major_facilitator_superfamily_domain",
|
| 301 |
+
"IPR022049__fam69,_protein-kinase_domain",
|
| 302 |
+
"IPR022666__large_ribosomal_subunit_protein_ul2,_rna-binding_domain",
|
| 303 |
+
"IPR022669__large_ribosomal_subunit_protein_ul2,_c-terminal",
|
| 304 |
+
"IPR022764__peptidase_s54,_rhomboid_domain",
|
| 305 |
+
"IPR022775__ap_complex,_mu/sigma_subunit",
|
| 306 |
+
"IPR023340__uma_domain",
|
| 307 |
+
"IPR023412__ribonuclease_a-domain",
|
| 308 |
+
"IPR023780__chromo_domain",
|
| 309 |
+
"IPR023796__serpin_domain",
|
| 310 |
+
"IPR023801__histone_deacetylase_domain",
|
| 311 |
+
"IPR024771__suz_domain",
|
| 312 |
+
"IPR025110__amp-binding_enzyme,_c-terminal_domain",
|
| 313 |
+
"IPR025256__tm7s3/tm198-like_domain",
|
| 314 |
+
"IPR025933__beta-defensin_domain",
|
| 315 |
+
"IPR027370__zinc_finger,_ring-type,_eukaryotic",
|
| 316 |
+
"IPR027450__alpha-ketoglutarate-dependent_dioxygenase_alkb-like",
|
| 317 |
+
"IPR027791__galactosyltransferase,_c-terminal",
|
| 318 |
+
"IPR027995__galactosyltransferase,_n-terminal",
|
| 319 |
+
"IPR028002__myb/sant-like_dna-binding_domain_5",
|
| 320 |
+
"IPR028021__katanin_p80_subunit,_c-terminal",
|
| 321 |
+
"IPR028565__mu_homology_domain",
|
| 322 |
+
"IPR028889__ubiquitin_specific_protease_ups,_catalytic_domain",
|
| 323 |
+
"IPR028933__lebercilin_domain",
|
| 324 |
+
"IPR029244__fam69,_n-terminal",
|
| 325 |
+
"IPR029281__fam194,_c-terminal",
|
| 326 |
+
"IPR030379__septin-type_guanine_nucleotide-binding_(g)_domain",
|
| 327 |
+
"IPR031315__lns2/pitp",
|
| 328 |
+
"IPR031320__gage",
|
| 329 |
+
"IPR032098__acyltransferase,_c-terminal_domain",
|
| 330 |
+
"IPR032198__e2f_transcription_factor,_cc-mb_domain",
|
| 331 |
+
"IPR033729__serine-trna_ligase_catalytic_core_domain",
|
| 332 |
+
"IPR033739__peptidase_m10a,_catalytic_domain",
|
| 333 |
+
"IPR033899__cxc_chemokine_domain",
|
| 334 |
+
"IPR033989__cd209-like,_c-type_lectin-like_domain",
|
| 335 |
+
"IPR033992__natural_killer_cell_receptor-like,_c-type_lectin-like_domain",
|
| 336 |
+
"IPR034085__tog_domain",
|
| 337 |
+
"IPR034133__chemokine_cc,_dccl_motif-cointaining_domain",
|
| 338 |
+
"IPR034732__extended_phd_(ephd)_domain",
|
| 339 |
+
"IPR035076__snake_toxin/toxin-like",
|
| 340 |
+
"IPR035587__dus-like,_fmn-binding_domain",
|
| 341 |
+
"IPR037516__tripartite_denn_domain",
|
| 342 |
+
"IPR037518__mpn_domain",
|
| 343 |
+
"IPR041418__sam_domain",
|
| 344 |
+
"IPR041569__aaa_atpase,_aaa+_lid_domain",
|
| 345 |
+
"IPR041698__methyltransferase_domain_25",
|
| 346 |
+
"IPR044744__znrf4_/rnf13/rnf167,_pa_domain",
|
| 347 |
+
"IPR044822__myb/sant-like_dna-binding_domain_4",
|
| 348 |
+
"IPR044865__mrh_domain",
|
| 349 |
+
"IPR045135__26s_proteasome_regulatory_subunit_rpn7,_n-terminal",
|
| 350 |
+
"IPR045885__n-acetylgalactosaminyltransferase",
|
| 351 |
+
"IPR046371__bcl-2,_bcl-2_homology_region_1-3",
|
| 352 |
+
"IPR047575__sm_domain",
|
| 353 |
+
"IPR048271__paraneoplastic_antigen_ma-like,_n-terminal_domain",
|
| 354 |
+
"IPR048287__thrombospondin-like,_n-terminal_domain",
|
| 355 |
+
"IPR048290__zona_pellucida_domain,_chordate-type",
|
| 356 |
+
"IPR049730__snf2/rad5-like,_c-terminal_helicase_domain",
|
| 357 |
+
"IPR049883__notch1_egf-like_calcium-binding_domain",
|
| 358 |
+
"IPR049899__zinc_finger,_c2hc/c3h-type",
|
| 359 |
+
"IPR053891__shisa,_n-terminal_domain",
|
| 360 |
+
"IPR053896__butyrophilin_subfamily_3_member_a2-like,_ig-c_domain",
|
| 361 |
+
"IPR054076__zuotin-like,_zuotin_homology_domain",
|
| 362 |
+
"IPR054708__poly(a)_rna_polymerase,_mitochondrial-like,_central_palm_domain",
|
| 363 |
+
"IPR055256__khdc4/bbp-like,_kh-domain_type_i",
|
| 364 |
+
"IPR055355__zp-c_domain",
|
| 365 |
+
"IPR055356__zp-n_domain",
|
| 366 |
+
"IPR055414__disease_resistance_r13l4/shoc-2-like,_lrr_domain",
|
| 367 |
+
"IPR055439__eml-like,_first_beta-propeller_domain",
|
| 368 |
+
"IPR055442__eml-like,_second_beta-propeller_domain",
|
| 369 |
+
"IPR056436__zic1-5/gli1-3like,_c2h2_zinc_finger",
|
| 370 |
+
"IPR057244__gain,_subdomain_b"
|
| 371 |
+
],
|
| 372 |
+
"rows": {
|
| 373 |
+
"train": 5307,
|
| 374 |
+
"validation": 1371,
|
| 375 |
+
"test": 1325
|
| 376 |
+
},
|
| 377 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_domain_clustersplit_20_50.parquet.gz",
|
| 378 |
+
"licence": "CC BY 4.0"
|
| 379 |
+
}
|
interpro_domain/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:dc498a05067dd8adb827486740a4a6123e7d5c2c02d8c8b7ef38e5a1bb965de7
|
| 3 |
+
size 598858
|
interpro_domain/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7f356f7c35274d4951a88e2fc4a73862a30683f93a412d3a80e01c0643131818
|
| 3 |
+
size 2465261
|
interpro_domain/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f945873eeaea6793fd899b03bc84debb1303b287f1a7fecbe4027f5d09a8cb3b
|
| 3 |
+
size 614959
|
interpro_family/metadata.json
ADDED
|
@@ -0,0 +1,254 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_family",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 239,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000006__metallothionein,_vertebrate",
|
| 8 |
+
"IPR000276__g_protein-coupled_receptor,_rhodopsin-like",
|
| 9 |
+
"IPR000286__histone_deacetylase_hdac",
|
| 10 |
+
"IPR000301__tetraspanin,_animals",
|
| 11 |
+
"IPR000558__histone_h2b",
|
| 12 |
+
"IPR000560__histidine_phosphatase_superfamily,_clade-2",
|
| 13 |
+
"IPR000615__bestrophin",
|
| 14 |
+
"IPR000725__olfactory_receptor",
|
| 15 |
+
"IPR000734__triacylglycerol_lipase_family",
|
| 16 |
+
"IPR000798__ezrin/radixin/moesin-like",
|
| 17 |
+
"IPR000832__gpcr,_family_2,_secretin-like",
|
| 18 |
+
"IPR000837__ap-1_transcription_factor",
|
| 19 |
+
"IPR000874__bombesin/neuromedin-b/ranatensin_peptide_family",
|
| 20 |
+
"IPR000911__ribosomal_protein_ul11",
|
| 21 |
+
"IPR000920__myelin_p0_protein-related",
|
| 22 |
+
"IPR000929__dopamine_receptor_family",
|
| 23 |
+
"IPR001067__nuclear_translocator",
|
| 24 |
+
"IPR001128__cytochrome_p450",
|
| 25 |
+
"IPR001314__peptidase_s1a,_chymotrypsin_family",
|
| 26 |
+
"IPR001353__proteasome,_subunit_alpha/beta",
|
| 27 |
+
"IPR001388__synaptobrevin-like",
|
| 28 |
+
"IPR001392__clathrin_adaptor,_mu_subunit",
|
| 29 |
+
"IPR001545__gonadotropin,_beta_subunit",
|
| 30 |
+
"IPR001564__nucleoside_diphosphate_kinase",
|
| 31 |
+
"IPR001613__flavin_amine_oxidase",
|
| 32 |
+
"IPR001675__glycosyl_transferase_family_29",
|
| 33 |
+
"IPR001753__enoyl-coa_hydratase/isomerase",
|
| 34 |
+
"IPR001806__small_gtpase",
|
| 35 |
+
"IPR001958__tetracycline_resistance_protein_teta/multidrug_resistance_protein_mdtg-like",
|
| 36 |
+
"IPR002051__haem_oxygenase",
|
| 37 |
+
"IPR002067__mitochondrial_carrier_protein",
|
| 38 |
+
"IPR002164__nucleosome_assembly_protein_(nap)",
|
| 39 |
+
"IPR002209__fibroblast_growth_factor_family",
|
| 40 |
+
"IPR002345__lipocalin",
|
| 41 |
+
"IPR002347__short-chain_dehydrogenase/reductase_sdr",
|
| 42 |
+
"IPR002398__peptidase_c14_family",
|
| 43 |
+
"IPR002401__cytochrome_p450,_e-class,_group_i",
|
| 44 |
+
"IPR002423__chaperonin_cpn60/groel/tcp-1_family",
|
| 45 |
+
"IPR002450__von_ebner's_gland_protein/_bos/can_allergen",
|
| 46 |
+
"IPR002494__keratin-associated_protein",
|
| 47 |
+
"IPR002495__glycosyl_transferase,_family_8",
|
| 48 |
+
"IPR002659__glycosyl_transferase,_family_31",
|
| 49 |
+
"IPR002777__prefoldin_beta-like",
|
| 50 |
+
"IPR002957__keratin,_type_i",
|
| 51 |
+
"IPR003092__two_pore_domain_potassium_channel,_task_family",
|
| 52 |
+
"IPR003177__cytochrome_c_oxidase_subunit_viia,_metazoa",
|
| 53 |
+
"IPR003280__two_pore_domain_potassium_channel",
|
| 54 |
+
"IPR003406__glycosyl_transferase,_family_14",
|
| 55 |
+
"IPR003578__small_gtpase_rho",
|
| 56 |
+
"IPR003689__zinc/iron_permease",
|
| 57 |
+
"IPR003968__potassium_channel,_voltage_dependent,_kv",
|
| 58 |
+
"IPR003971__potassium_channel,_voltage_dependent,_kv5/kv9",
|
| 59 |
+
"IPR004031__pmp-22/emp/mp20/claudin",
|
| 60 |
+
"IPR004156__organic_anion_transporter_polypeptide",
|
| 61 |
+
"IPR004171__camp-dependent_protein_kinase_inhibitor",
|
| 62 |
+
"IPR004299__membrane_bound_o-acyl_transferase,_mboat",
|
| 63 |
+
"IPR004301__nucleoplasmin_family",
|
| 64 |
+
"IPR004752__ampg-like_permease/acetyl-coenzyme_a_transporter_1",
|
| 65 |
+
"IPR005334__dynein_light_chain_tctex-1_like",
|
| 66 |
+
"IPR005828__major_facilitator,_sugar_transporter-like",
|
| 67 |
+
"IPR006028__gamma-aminobutyric_acid_a_receptor/glycine_receptor_alpha",
|
| 68 |
+
"IPR006187__claudin",
|
| 69 |
+
"IPR006201__neurotransmitter-gated_ion-channel",
|
| 70 |
+
"IPR006439__had_hydrolase,_subfamily_ia",
|
| 71 |
+
"IPR006838__adtrp/aig1",
|
| 72 |
+
"IPR006876__lmbr1-like_membrane_protein",
|
| 73 |
+
"IPR007237__cd20-like_family",
|
| 74 |
+
"IPR007305__vesicle_transport_protein,_got1/sft2-like",
|
| 75 |
+
"IPR007593__cd225/dispanin_family",
|
| 76 |
+
"IPR007659__keratin,_high-sulphur_matrix_protein",
|
| 77 |
+
"IPR007951__keratin-associated_protein,_pmg_type",
|
| 78 |
+
"IPR008428__chondroitin_n-acetylgalactosaminyltransferase",
|
| 79 |
+
"IPR009262__solute_carrier_family_35_member_slc35f1/f2/f6",
|
| 80 |
+
"IPR009637__transmembrane_protein_gpr107/gpr108-like",
|
| 81 |
+
"IPR010345__interleukin-17_family",
|
| 82 |
+
"IPR010548__bnip3",
|
| 83 |
+
"IPR011701__major_facilitator_superfamily",
|
| 84 |
+
"IPR012163__sialyltransferase",
|
| 85 |
+
"IPR013128__peptidase_c1a",
|
| 86 |
+
"IPR013273__adamts/adamts-like",
|
| 87 |
+
"IPR013836__cd34/podocalyxin",
|
| 88 |
+
"IPR014631__cellular_repressor_of_e1a-stimulated_genes_(creg)",
|
| 89 |
+
"IPR015496__ubiquilin",
|
| 90 |
+
"IPR015526__frizzled/secreted_frizzled-related_protein",
|
| 91 |
+
"IPR015615__transforming_growth_factor-beta-related",
|
| 92 |
+
"IPR015631__cd2/slam_family_receptor",
|
| 93 |
+
"IPR015812__integrin_beta_subunit",
|
| 94 |
+
"IPR016053__haem_oxygenase-like",
|
| 95 |
+
"IPR016272__lipase,_liph-type",
|
| 96 |
+
"IPR016469__carbohydrate_sulfotransferase",
|
| 97 |
+
"IPR016491__septin",
|
| 98 |
+
"IPR018154__tlv/env_coat_polyprotein",
|
| 99 |
+
"IPR018499__tetraspanin/peripherin",
|
| 100 |
+
"IPR019585__26s_proteasome_regulatory_subunit_rpn7/cop9_signalosome_complex_subunit_1",
|
| 101 |
+
"IPR021134__bestrophin-like",
|
| 102 |
+
"IPR021190__peptidase_m10a",
|
| 103 |
+
"IPR021743__keratin-associated_protein,_type8/19/20/21/22",
|
| 104 |
+
"IPR022352__insulin/igf/relaxin",
|
| 105 |
+
"IPR023235__fam105",
|
| 106 |
+
"IPR023333__proteasome_b-type_subunit",
|
| 107 |
+
"IPR024810__mab21l/cyclic_gmp-amp_synthase-like_receptor",
|
| 108 |
+
"IPR024936__cyclophilin-type_peptidyl-prolyl_cis-trans_isomerase",
|
| 109 |
+
"IPR026512__rgs7bp/rgs9bp_family",
|
| 110 |
+
"IPR026617__transmembrane_and_coiled-coil_domain-containing_protein_2/5",
|
| 111 |
+
"IPR027640__kinesin-like_protein",
|
| 112 |
+
"IPR027971__elongin_bc_and_polycomb_repressive_complex_2-associated_protein_epop-like",
|
| 113 |
+
"IPR028118__chibby_family",
|
| 114 |
+
"IPR028325__voltage-gated_potassium_channel",
|
| 115 |
+
"IPR028751__cation_channel_sperm-associated_auxiliary_subunit_delta/epsilon",
|
| 116 |
+
"IPR029684__schlafen_family",
|
| 117 |
+
"IPR030417__membrane-spanning_4-domains_subfamily_a",
|
| 118 |
+
"IPR030564__myotubularin",
|
| 119 |
+
"IPR031127__e3_ubiquitin_ligase_rbr_family",
|
| 120 |
+
"IPR031328__ephrin",
|
| 121 |
+
"IPR031627__pdzk1-interacting_protein_1/smim24",
|
| 122 |
+
"IPR032801__peroxiredoxin-like_2a/b/c",
|
| 123 |
+
"IPR037359__heparan_sulfate_sulfotransferase",
|
| 124 |
+
"IPR037796__transcription_initiation_factor_tfiid_subunit_6",
|
| 125 |
+
"IPR037936__netrin_receptor_unc5a-d",
|
| 126 |
+
"IPR039297__cytochrome_c_oxidase_subunit_vii",
|
| 127 |
+
"IPR039361__cyclin",
|
| 128 |
+
"IPR039809__chemokine_beta/gamma/delta",
|
| 129 |
+
"IPR040079__glutathione_transferase_family",
|
| 130 |
+
"IPR040167__transcription_factor_cp2-like",
|
| 131 |
+
"IPR040255__non-specific_endonuclease",
|
| 132 |
+
"IPR043183__dnaj_homolog_subfamily_b_member_2/6-like",
|
| 133 |
+
"IPR043198__cyclin/cyclin-like_subunit_ssn8",
|
| 134 |
+
"IPR043210__cd44_antigen-like",
|
| 135 |
+
"IPR043378__paired_mesoderm_homeobox_protein_1/2",
|
| 136 |
+
"IPR043563__nuclear_body_protein_sp110/sp140/sp140l-like",
|
| 137 |
+
"IPR044156__galectin-like",
|
| 138 |
+
"IPR045046__vacuolar_protein_sorting-associated_protein_9-like",
|
| 139 |
+
"IPR045103__e3_ubiquitin-protein_ligase_rnf5/rnf185-like",
|
| 140 |
+
"IPR045119__sun_domain-containing_protein_1-5",
|
| 141 |
+
"IPR046327__homeobox_protein_hox-a1/b1/d1",
|
| 142 |
+
"IPR046965__cyclin_a/b-like",
|
| 143 |
+
"IPR046985__inositol_5-phosphatase",
|
| 144 |
+
"IPR047132__olfactory_receptor_subfamily_6c-like",
|
| 145 |
+
"IPR048280__cytochrome_oxidase_c_subunit_vib-like",
|
| 146 |
+
"IPR050108__cyclin-dependent_kinase",
|
| 147 |
+
"IPR050111__c-type_lectin_and_snaclec_domain-containing_protein",
|
| 148 |
+
"IPR050113__ubiquitin-conjugating_enzyme",
|
| 149 |
+
"IPR050117__mitogen-activated_protein_(map)_kinase",
|
| 150 |
+
"IPR050122__receptor_tyrosine_kinase",
|
| 151 |
+
"IPR050125__g-protein_coupled_receptor_opsins",
|
| 152 |
+
"IPR050140__sry-related_hmg-box_transcription_factor-like",
|
| 153 |
+
"IPR050143__tripartite_motif-containing",
|
| 154 |
+
"IPR050150__immunoglobulin_variable_light_chain",
|
| 155 |
+
"IPR050160__major_histocompatibility_complex/immunoglobulin",
|
| 156 |
+
"IPR050164__ubiquitin_carboxyl-terminal_hydrolases",
|
| 157 |
+
"IPR050169__krueppel_c2h2-type_zinc-finger",
|
| 158 |
+
"IPR050185__ubiquitin_carboxyl-terminal_hydrolase",
|
| 159 |
+
"IPR050186__triose_phosphate/phosphate_translocator",
|
| 160 |
+
"IPR050199__immunoglobulin_heavy_variable",
|
| 161 |
+
"IPR050216__leucine-rich_repeat_domain-containing_protein",
|
| 162 |
+
"IPR050224__three_amino_acid_loop_extension_(tale)_homeobox",
|
| 163 |
+
"IPR050241__nad-capped_rna_hydrolase_nudc_subfamily",
|
| 164 |
+
"IPR050255__pou_domain_transcription_factor",
|
| 165 |
+
"IPR050281__flavin_monoamine_oxidase_and_related_enzymes",
|
| 166 |
+
"IPR050307__sterol_desaturase_and_related_enzymes",
|
| 167 |
+
"IPR050309__type-b_carboxylesterase/lipase",
|
| 168 |
+
"IPR050329__gli_c2h2-type_zinc-finger",
|
| 169 |
+
"IPR050331__zinc_finger",
|
| 170 |
+
"IPR050333__small_leucine-rich_proteoglycans",
|
| 171 |
+
"IPR050365__mitochondrial_import_inner_membrane_translocase_subunit_tim50",
|
| 172 |
+
"IPR050372__neurexin-related_cell_adhesion_and_synaptic_protein",
|
| 173 |
+
"IPR050373__fibrinogen_c-terminal_domain-containing_protein",
|
| 174 |
+
"IPR050380__immune_recognition_and_response_modulators",
|
| 175 |
+
"IPR050384__endophilin/sh3rf",
|
| 176 |
+
"IPR050394__homeobox_nk-like_transcription_regulators",
|
| 177 |
+
"IPR050402__olfactory_receptor_51/52/56-like",
|
| 178 |
+
"IPR050410__ccr4/nocturin_mrna_turnover_and_transcription",
|
| 179 |
+
"IPR050412__immunoglobulin-like_receptors_in_immune_regulation",
|
| 180 |
+
"IPR050427__human_olfactory_receptors",
|
| 181 |
+
"IPR050431__adaptor_complexes_medium_subunit",
|
| 182 |
+
"IPR050439__adamts_and_adamts-like",
|
| 183 |
+
"IPR050441__rna-binding_motif",
|
| 184 |
+
"IPR050457__zinc_finger_and_btb_domain-containing",
|
| 185 |
+
"IPR050467__leucine-rich_repeat_and_fibronectin_type-iii_domain-containing",
|
| 186 |
+
"IPR050502__eukaryotic_rna-binding",
|
| 187 |
+
"IPR050504__immunoglobulin_superfamily_btn/mog_domain-containing_protein",
|
| 188 |
+
"IPR050516__olfactory_g-protein_coupled_receptor",
|
| 189 |
+
"IPR050527__snail/krueppel_c2h2-type_zinc-finger",
|
| 190 |
+
"IPR050541__leucine-rich_repeat_and_transmembrane_domain-containing_protein",
|
| 191 |
+
"IPR050548__polycomb_group_and_chromatin_remodeling_factors",
|
| 192 |
+
"IPR050568__transcription/dna_replication_regulator",
|
| 193 |
+
"IPR050576__ciliary_and_flagellar_integrity-associated_protein",
|
| 194 |
+
"IPR050578__marvel_domain-containing_and_chemokine-like_factor_proteins",
|
| 195 |
+
"IPR050589__ikaros_c2h2-type_zinc-finger",
|
| 196 |
+
"IPR050617__e3_ubiquitin-protein_ligases_and_fn3/spry_domain-containing_proteins",
|
| 197 |
+
"IPR050636__c2h2-type_zinc_finger_domain-containing_protein",
|
| 198 |
+
"IPR050645__histidine_acid_phosphatase",
|
| 199 |
+
"IPR050649__paired_homeobox_transcription_factors",
|
| 200 |
+
"IPR050650__type_ii_cytokine_and_tissue_factor_receptors",
|
| 201 |
+
"IPR050653__protease_inhibitors_and_growth_factor_antagonists",
|
| 202 |
+
"IPR050663__ankyrin_repeat_and_socs_box",
|
| 203 |
+
"IPR050666__epithelial_splicing_regulatory",
|
| 204 |
+
"IPR050671__cd300_family_immune_receptors",
|
| 205 |
+
"IPR050685__low-density_lipoprotein_receptor",
|
| 206 |
+
"IPR050752__c2h2-type_zinc-finger_domain-containing_protein",
|
| 207 |
+
"IPR050754__peptidyl-prolyl_cis-trans_isomerase_fkbp4/5/8-like",
|
| 208 |
+
"IPR050755__trafac_ylqf/yawg_gtpases,_ribosome_maturation",
|
| 209 |
+
"IPR050758__zinc_finger_protein,_c2h2-type",
|
| 210 |
+
"IPR050774__kcmf1_and_dystrophin",
|
| 211 |
+
"IPR050776__ankyrin_repeat_and_cyclin-dependent_kinase_inhibitor",
|
| 212 |
+
"IPR050826__krueppel_c2h2-type_zinc_finger",
|
| 213 |
+
"IPR050840__adaptor_complexes_large_subunit",
|
| 214 |
+
"IPR050870__fast_kinase_domain-containing",
|
| 215 |
+
"IPR050888__zinc_finger_c2h2-type_transcription_regulators",
|
| 216 |
+
"IPR050918__cnf-like_phospholipase_a2_inhibitor",
|
| 217 |
+
"IPR050930__major_facilitator_superfamily_vesicular_transporter",
|
| 218 |
+
"IPR050933__circadian_clock_transcription_factors",
|
| 219 |
+
"IPR050944__family_with_sequence_similarity_83_(fam83)",
|
| 220 |
+
"IPR051002__ubiquitin-binding_and_autophagy-associated_domain-containing_protein",
|
| 221 |
+
"IPR051036__sialic_acid-binding_ig-like_lectin",
|
| 222 |
+
"IPR051051__e3_ubiquitin-protein_ligase_trim/rnf",
|
| 223 |
+
"IPR051061__zinc_finger_transcriptional_regulators",
|
| 224 |
+
"IPR051073__znrf3/arkadia_e3_ubiquitin-protein_ligases",
|
| 225 |
+
"IPR051099__anterior_gradient_and_thioredoxin_domain",
|
| 226 |
+
"IPR051110__ly-6/neurotoxin-like_and_gpi-anchored",
|
| 227 |
+
"IPR051111__calcium-binding_regulatory_protein",
|
| 228 |
+
"IPR051131__nek_ser/thr_protein_kinase_family,_nima_subfamily",
|
| 229 |
+
"IPR051135__gal/glcnac/galnac_sulfotransferase",
|
| 230 |
+
"IPR051227__chondroitin_sulfate_glycosyltransferase",
|
| 231 |
+
"IPR051230__amyloid-beta_a4_precursor_protein-binding",
|
| 232 |
+
"IPR051241__dzip_and_rilpl",
|
| 233 |
+
"IPR051291__ciliary_microtubule_associated",
|
| 234 |
+
"IPR051507__polycomb_group_ring_finger",
|
| 235 |
+
"IPR051594__krit1/frmd8",
|
| 236 |
+
"IPR051713__t-cell_activation_and_immune_regulation_protein",
|
| 237 |
+
"IPR051739__rhomboid-related_intramembrane_serine_proteases",
|
| 238 |
+
"IPR051771__fam167_domain-containing_protein",
|
| 239 |
+
"IPR051772__gastrokine",
|
| 240 |
+
"IPR051834__ring_finger_e3_ubiquitin-protein_ligase",
|
| 241 |
+
"IPR051856__cell_surface_receptor_and_e3_ligase_protein",
|
| 242 |
+
"IPR052119__elongin_bc-prc2_interaction_&_viral_restriction",
|
| 243 |
+
"IPR052207__max-like/e-box-binding_transcription_factors",
|
| 244 |
+
"IPR052464__synovial_proliferation_regulator",
|
| 245 |
+
"IPR052672__type_i_cytokine_receptor_family,_type_2_subfamily"
|
| 246 |
+
],
|
| 247 |
+
"rows": {
|
| 248 |
+
"train": 2097,
|
| 249 |
+
"validation": 678,
|
| 250 |
+
"test": 826
|
| 251 |
+
},
|
| 252 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_family_clustersplit_20_50.parquet.gz",
|
| 253 |
+
"licence": "CC BY 4.0"
|
| 254 |
+
}
|
interpro_family/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:828755c63a168a2a3da857fd041d4ebb558c93885c5f22d11d337aef99558710
|
| 3 |
+
size 344711
|
interpro_family/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:992a905bf716596e4aab9831ab0d019f1ff9498e2b302f5b663ae313d3b5c457
|
| 3 |
+
size 844254
|
interpro_family/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:c23f5232047adb5d968519f8b1307c5e3a5fdebf1dd24ed392e37e91612d4e3f
|
| 3 |
+
size 248702
|
interpro_homologous_superfamily/metadata.json
ADDED
|
@@ -0,0 +1,115 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_homologous_superfamily",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 100,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR008917__transcription_factor,_skn-1-like,_dna-binding_domain_superfamily",
|
| 8 |
+
"IPR008942__enth/vhs",
|
| 9 |
+
"IPR008967__p53-like_transcription_factor,_dna-binding_domain_superfamily",
|
| 10 |
+
"IPR008972__cupredoxin",
|
| 11 |
+
"IPR008979__galactose-binding-like_domain_superfamily",
|
| 12 |
+
"IPR008983__tumour_necrosis_factor-like_domain_superfamily",
|
| 13 |
+
"IPR008984__smad/fha_domain_superfamily",
|
| 14 |
+
"IPR008991__translation_protein_sh3-like_domain_superfamily",
|
| 15 |
+
"IPR009000__translation_protein,_beta-barrel_domain_superfamily",
|
| 16 |
+
"IPR009003__peptidase_s1,_pa_clan",
|
| 17 |
+
"IPR009030__growth_factor_receptor_cysteine-rich_domain_superfamily",
|
| 18 |
+
"IPR009057__homedomain-like_superfamily",
|
| 19 |
+
"IPR009060__uba-like_superfamily",
|
| 20 |
+
"IPR009072__histone-fold",
|
| 21 |
+
"IPR011009__protein_kinase-like_domain_superfamily",
|
| 22 |
+
"IPR011011__zinc_finger,_fyve/phd-type",
|
| 23 |
+
"IPR011012__longin-like_domain_superfamily",
|
| 24 |
+
"IPR011029__death-like_domain_superfamily",
|
| 25 |
+
"IPR011042__six-bladed_beta-propeller,_tolb-like",
|
| 26 |
+
"IPR011333__skp1/btb/poz_domain_superfamily",
|
| 27 |
+
"IPR011989__armadillo-like_helical",
|
| 28 |
+
"IPR011990__tetratricopeptide-like_helical_domain_superfamily",
|
| 29 |
+
"IPR011992__ef-hand_domain_pair",
|
| 30 |
+
"IPR011993__ph-like_domain_superfamily",
|
| 31 |
+
"IPR012337__ribonuclease_h-like_superfamily",
|
| 32 |
+
"IPR012340__nucleic_acid-binding,_ob-fold",
|
| 33 |
+
"IPR012674__calycin",
|
| 34 |
+
"IPR012677__nucleotide-binding_alpha-beta_plait_domain_superfamily",
|
| 35 |
+
"IPR013083__zinc_finger,_ring/fyve/phd-type",
|
| 36 |
+
"IPR013088__zinc_finger,_nhr/gata-type",
|
| 37 |
+
"IPR013320__concanavalin_a-like_lectin/glucanase_domain_superfamily",
|
| 38 |
+
"IPR013761__sterile_alpha_motif/pointed_domain_superfamily",
|
| 39 |
+
"IPR013783__immunoglobulin-like_fold",
|
| 40 |
+
"IPR013785__aldolase-type_tim_barrel",
|
| 41 |
+
"IPR014352__ferm/acyl-coa-binding_protein_superfamily",
|
| 42 |
+
"IPR014710__rmlc-like_jelly_roll_fold",
|
| 43 |
+
"IPR014722__large_ribosomal_subunit_protein_ul2,_domain_2",
|
| 44 |
+
"IPR014729__rossmann-like_alpha/beta/alpha_sandwich_fold",
|
| 45 |
+
"IPR014756__immunoglobulin_e-set",
|
| 46 |
+
"IPR015943__wd40/yvtn_repeat-like-containing_domain_superfamily",
|
| 47 |
+
"IPR016024__armadillo-type_fold",
|
| 48 |
+
"IPR016181__acyl-coa_n-acyltransferase",
|
| 49 |
+
"IPR017853__glycoside_hydrolase_superfamily",
|
| 50 |
+
"IPR023214__had_superfamily",
|
| 51 |
+
"IPR023578__ras_guanine_nucleotide_exchange_factor_domain_superfamily",
|
| 52 |
+
"IPR027397__catenin_binding_domain_superfamily",
|
| 53 |
+
"IPR027417__p-loop_containing_nucleoside_triphosphate_hydrolase",
|
| 54 |
+
"IPR029021__protein-tyrosine_phosphatase-like",
|
| 55 |
+
"IPR029034__cystine-knot_cytokine",
|
| 56 |
+
"IPR029044__nucleotide-diphospho-sugar_transferases",
|
| 57 |
+
"IPR029055__nucleophile_aminohydrolases,_n-terminal",
|
| 58 |
+
"IPR029058__alpha/beta_hydrolase_fold",
|
| 59 |
+
"IPR029061__thiamin_diphosphate-binding_fold",
|
| 60 |
+
"IPR029063__s-adenosyl-l-methionine-dependent_methyltransferase_superfamily",
|
| 61 |
+
"IPR029071__ubiquitin-like_domain_superfamily",
|
| 62 |
+
"IPR032466__metal-dependent_hydrolase",
|
| 63 |
+
"IPR032675__leucine-rich_repeat_domain_superfamily",
|
| 64 |
+
"IPR035892__c2_domain_superfamily",
|
| 65 |
+
"IPR035969__rab-gap-tbc_domain_superfamily",
|
| 66 |
+
"IPR035979__rna-binding_domain_superfamily",
|
| 67 |
+
"IPR036020__ww_domain_superfamily",
|
| 68 |
+
"IPR036028__sh3-like_domain_superfamily",
|
| 69 |
+
"IPR036034__pdz_superfamily",
|
| 70 |
+
"IPR036047__f-box-like_domain_superfamily",
|
| 71 |
+
"IPR036051__krueppel-associated_box_domain_superfamily",
|
| 72 |
+
"IPR036058__kazal_domain_superfamily",
|
| 73 |
+
"IPR036116__fibronectin_type_iii_superfamily",
|
| 74 |
+
"IPR036179__immunoglobulin-like_domain_superfamily",
|
| 75 |
+
"IPR036188__fad/nad(p)-binding_domain_superfamily",
|
| 76 |
+
"IPR036236__zinc_finger_c2h2_superfamily",
|
| 77 |
+
"IPR036249__thioredoxin-like_superfamily",
|
| 78 |
+
"IPR036259__mfs_transporter_superfamily",
|
| 79 |
+
"IPR036284__g-protein_gamma-like_domain_superfamily",
|
| 80 |
+
"IPR036291__nad(p)-binding_domain_superfamily",
|
| 81 |
+
"IPR036305__rgs_domain_superfamily",
|
| 82 |
+
"IPR036322__wd40-repeat-containing_domain_superfamily",
|
| 83 |
+
"IPR036383__thrombospondin_type-1_repeat_superfamily",
|
| 84 |
+
"IPR036388__winged_helix-like_dna-binding_domain_superfamily",
|
| 85 |
+
"IPR036390__winged_helix_dna-binding_domain_superfamily",
|
| 86 |
+
"IPR036397__ribonuclease_h_superfamily",
|
| 87 |
+
"IPR036412__had-like_superfamily",
|
| 88 |
+
"IPR036465__von_willebrand_factor_a-like_domain_superfamily",
|
| 89 |
+
"IPR036638__helix-loop-helix_dna-binding_domain_superfamily",
|
| 90 |
+
"IPR036691__endonuclease/exonuclease/phosphatase_superfamily",
|
| 91 |
+
"IPR036770__ankyrin_repeat-containing_domain_superfamily",
|
| 92 |
+
"IPR036860__sh2_domain_superfamily",
|
| 93 |
+
"IPR036869__chaperone_j-domain_superfamily",
|
| 94 |
+
"IPR036871__px_domain_superfamily",
|
| 95 |
+
"IPR036872__ch_domain_superfamily",
|
| 96 |
+
"IPR036938__phosphatidic_acid_phosphatase_type_2/haloperoxidase_superfamily",
|
| 97 |
+
"IPR036960__t-box_superfamily",
|
| 98 |
+
"IPR036964__ras_guanine-nucleotide_exchange_factor,_catalytic_domain_superfamily",
|
| 99 |
+
"IPR038765__papain-like_cysteine_peptidase_superfamily",
|
| 100 |
+
"IPR041898__mage_homology_domain,_winged_helix_wh1_motif",
|
| 101 |
+
"IPR041899__mage_homology_domain,_winged_helix_wh2_motif",
|
| 102 |
+
"IPR043136__b30.2/spry_domain_superfamily",
|
| 103 |
+
"IPR044926__rgs,_subdomain_2",
|
| 104 |
+
"IPR045860__snake_toxin-like_superfamily",
|
| 105 |
+
"IPR046347__basic-leucine_zipper_domain_superfamily",
|
| 106 |
+
"IPR046349__c1-like_domain_superfamily"
|
| 107 |
+
],
|
| 108 |
+
"rows": {
|
| 109 |
+
"train": 5499,
|
| 110 |
+
"validation": 1368,
|
| 111 |
+
"test": 1331
|
| 112 |
+
},
|
| 113 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_homologous_superfamily_clustersplit_20_50.parquet.gz",
|
| 114 |
+
"licence": "CC BY 4.0"
|
| 115 |
+
}
|
interpro_homologous_superfamily/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:929abc1ff6092be8989171f7d07d927b9ac163ad6b7ba94071f473e5ec87f8d1
|
| 3 |
+
size 655182
|
interpro_homologous_superfamily/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:d811ae3f9786aaf12567de73e196fbaf86d94499fa26d2566935e17c0e450a18
|
| 3 |
+
size 2672189
|
interpro_homologous_superfamily/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:d944beeb120c92591a30825d916ae21e7ce5b318279e9a7c83cb678c17de1f3b
|
| 3 |
+
size 610612
|
interpro_repeat/metadata.json
ADDED
|
@@ -0,0 +1,80 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": "interpro_repeat",
|
| 3 |
+
"task_level": "protein",
|
| 4 |
+
"task_type": "multilabel",
|
| 5 |
+
"num_labels": 65,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"IPR000033__ldlr_class_b_repeat",
|
| 8 |
+
"IPR000225__armadillo",
|
| 9 |
+
"IPR000357__heat_repeat",
|
| 10 |
+
"IPR000408__regulator_of_chromosome_condensation,_rcc1",
|
| 11 |
+
"IPR000547__clathrin,_heavy_chain/vps,_7-fold_repeat",
|
| 12 |
+
"IPR000557__calponin_repeat",
|
| 13 |
+
"IPR000884__thrombospondin_type-1_(tsp1)_repeat",
|
| 14 |
+
"IPR000900__nebulin_repeat",
|
| 15 |
+
"IPR001258__nhl_repeat",
|
| 16 |
+
"IPR001298__filamin/abp280_repeat",
|
| 17 |
+
"IPR001313__pumilio_rna-binding_repeat",
|
| 18 |
+
"IPR001370__bir_repeat",
|
| 19 |
+
"IPR001610__pac_motif",
|
| 20 |
+
"IPR001611__leucine-rich_repeat",
|
| 21 |
+
"IPR001680__wd40_repeat",
|
| 22 |
+
"IPR002015__proteasome/cyclosome_repeat",
|
| 23 |
+
"IPR002017__spectrin_repeat",
|
| 24 |
+
"IPR002088__protein_prenyltransferase,_alpha_subunit",
|
| 25 |
+
"IPR002110__ankyrin_repeat",
|
| 26 |
+
"IPR002165__plexin_repeat",
|
| 27 |
+
"IPR002172__low-density_lipoprotein_(ldl)_receptor_class_a_repeat",
|
| 28 |
+
"IPR002515__zinc_finger,_c2h2c-type",
|
| 29 |
+
"IPR002885__pentatricopeptide_repeat",
|
| 30 |
+
"IPR003107__hat_(half-a-tpr)_repeat",
|
| 31 |
+
"IPR003110__phosphorylated_immunoreceptor_signalling_itam",
|
| 32 |
+
"IPR003134__hs1/cortactin",
|
| 33 |
+
"IPR003367__thrombospondin,_type_3-like_repeat",
|
| 34 |
+
"IPR003409__morn_repeat",
|
| 35 |
+
"IPR003591__leucine-rich_repeat,_typical_subtype",
|
| 36 |
+
"IPR004018__rpel_repeat",
|
| 37 |
+
"IPR004092__mbt_repeat",
|
| 38 |
+
"IPR004153__cxcxc_repeat",
|
| 39 |
+
"IPR004212__gtf2i-like_repeat",
|
| 40 |
+
"IPR005492__leucine-rich_glioma-inactivated_,_eptp_repeat",
|
| 41 |
+
"IPR006212__furin-like_repeat",
|
| 42 |
+
"IPR006553__leucine-rich_repeat,_cysteine-containing_subtype",
|
| 43 |
+
"IPR006597__sel1-like_repeat",
|
| 44 |
+
"IPR006603__pq-loop_repeat",
|
| 45 |
+
"IPR006623__testicular_haploid_expressed_repeat",
|
| 46 |
+
"IPR006626__parallel_beta-helix_repeat",
|
| 47 |
+
"IPR006627__tdu_repeat",
|
| 48 |
+
"IPR006652__kelch_repeat_type_1",
|
| 49 |
+
"IPR008160__collagen_triple_helix_repeat",
|
| 50 |
+
"IPR009039__ear",
|
| 51 |
+
"IPR010736__sperm-tail_pg-rich_repeat",
|
| 52 |
+
"IPR013105__tetratricopeptide_repeat_2",
|
| 53 |
+
"IPR013517__fg-gap_repeat",
|
| 54 |
+
"IPR015792__kinesin_light_chain_repeat",
|
| 55 |
+
"IPR017868__filamin/abp280_repeat-like",
|
| 56 |
+
"IPR017897__thrombospondin,_type_3_repeat",
|
| 57 |
+
"IPR018108__mitochondrial_carrier_protein,_transmembrane_region",
|
| 58 |
+
"IPR018159__spectrin/alpha-actinin",
|
| 59 |
+
"IPR018391__pyrrolo-quinoline_quinone_beta-propeller_repeat",
|
| 60 |
+
"IPR018487__hemopexin-like_repeats",
|
| 61 |
+
"IPR018502__annexin_repeat",
|
| 62 |
+
"IPR019734__tetratricopeptide_repeat",
|
| 63 |
+
"IPR020472__pac1/lis1-like,_wd-40_repeat",
|
| 64 |
+
"IPR021133__heat,_type_2",
|
| 65 |
+
"IPR022441__parallel_beta-helix_repeat-2",
|
| 66 |
+
"IPR025875__leucine_rich_repeat_4",
|
| 67 |
+
"IPR026906__bspa-type_lrr_region",
|
| 68 |
+
"IPR032413__atypical_arm_repeat",
|
| 69 |
+
"IPR049039__regulator_of_microtubule_dynamics_protein_1-3,_alpha_helical_repeats",
|
| 70 |
+
"IPR049152__efr3-like,_armadillo_repeat",
|
| 71 |
+
"IPR049367__testis-expressed_protein_13c/d,_mvplgdsxshs_repeat"
|
| 72 |
+
],
|
| 73 |
+
"rows": {
|
| 74 |
+
"train": 819,
|
| 75 |
+
"validation": 189,
|
| 76 |
+
"test": 181
|
| 77 |
+
},
|
| 78 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_interpro_InterPro_repeat_clustersplit_30_50.parquet.gz",
|
| 79 |
+
"licence": "CC BY 4.0"
|
| 80 |
+
}
|
interpro_repeat/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:18829a7f5c097c84f404c63a67830dd9d79aedd2f19255bc5b31ee189a76db2a
|
| 3 |
+
size 102026
|
interpro_repeat/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3e8b3de72278d60837aae5d27fa03003cbd6575f20e07e0402363988a5c189f4
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| 3 |
+
size 474155
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interpro_repeat/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:72c4e4df45f70f4d861b0cf3539154601a3e59a545eace6d2e445b28331e8489
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| 3 |
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size 115753
|
lipidation/metadata.json
ADDED
|
@@ -0,0 +1,40 @@
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|
| 1 |
+
{
|
| 2 |
+
"config": "lipidation",
|
| 3 |
+
"task_level": "residue",
|
| 4 |
+
"task_type": "multiclass",
|
| 5 |
+
"num_labels": 25,
|
| 6 |
+
"label_names": [
|
| 7 |
+
"-",
|
| 8 |
+
"Cholesterol_glycine_ester",
|
| 9 |
+
"GPI-anchor_amidated_alanine",
|
| 10 |
+
"GPI-anchor_amidated_asparagine",
|
| 11 |
+
"GPI-anchor_amidated_aspartate",
|
| 12 |
+
"GPI-anchor_amidated_cysteine",
|
| 13 |
+
"GPI-anchor_amidated_glycine",
|
| 14 |
+
"GPI-anchor_amidated_serine",
|
| 15 |
+
"LIPID",
|
| 16 |
+
"N-myristoyl_glycine",
|
| 17 |
+
"N-palmitoyl_cysteine",
|
| 18 |
+
"N-palmitoyl_glycine",
|
| 19 |
+
"N6-decanoyllysine",
|
| 20 |
+
"N6-myristoyl_lysine",
|
| 21 |
+
"N6-palmitoyl_lysine",
|
| 22 |
+
"O-octanoyl_serine",
|
| 23 |
+
"O-palmitoleoyl_serine",
|
| 24 |
+
"O-palmitoyl_serine",
|
| 25 |
+
"Omega-hydroxyceramide_glutamate_ester",
|
| 26 |
+
"Phosphatidylethanolamine_amidated_glycine",
|
| 27 |
+
"Phosphatidylserine_amidated_glycine",
|
| 28 |
+
"S-farnesyl_cysteine",
|
| 29 |
+
"S-geranylgeranyl_cysteine",
|
| 30 |
+
"S-palmitoyl_cysteine",
|
| 31 |
+
"S-stearoyl_cysteine"
|
| 32 |
+
],
|
| 33 |
+
"rows": {
|
| 34 |
+
"train": 654,
|
| 35 |
+
"validation": 129,
|
| 36 |
+
"test": 195
|
| 37 |
+
},
|
| 38 |
+
"source": "Figshare record 31169506, file h_sapiens_proteome_uniprot_lipidation_clustersplit_20_50.parquet.gz",
|
| 39 |
+
"licence": "CC BY 4.0"
|
| 40 |
+
}
|
lipidation/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
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|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:9447d6439db92b390400c86f0aef2269aee13dd877b6f43fca43a773b3d69d90
|
| 3 |
+
size 62910
|
lipidation/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:c9c52090aa8ea780c57abc09ed7434ac3522bc983b58ee2f13e446b75e33197a
|
| 3 |
+
size 265380
|
lipidation/validation.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:eb5683dda6aeb63d6ff807b863b8012c74aad7eac9c202856d94723d7637222d
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| 3 |
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size 54918
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