| { |
| "num_paragraphs": 9, |
| "paragraphs": [ |
| { |
| "index": 0, |
| "text": "institutions in France or abroad, or from public or private research centers. L'archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d'enseignement et de recherche français ou étrangers, des laboratoires publics ou privés.", |
| "entities": [] |
| }, |
| { |
| "index": 1, |
| "text": "Mouna El Garb, Emmanuel Coquery, Fabien Duchateau, Nicolas Lumineau. Bioinformatics Workflows: Representation and Query. Symposium MaDICS, May 2025, Toulouse, France. ⟨hal-05241257⟩", |
| "entities": [] |
| }, |
| { |
| "index": 2, |
| "text": "• How to sufficiently describe scientific workflows for reuse and sharing ? • How to write and build queries to retrieve relevant workflows ? • Graph of the workflow matching to the query:", |
| "entities": [] |
| }, |
| { |
| "index": 3, |
| "text": "• Experimental validation of BioFlow-Model • Rewrite the queries to extract workflows that closely match the user's query • Rank the workflows returned by query execution based on their relevance", |
| "entities": [] |
| }, |
| { |
| "index": 4, |
| "text": "Legend: fully represented, ~ partially represented, -not covered", |
| "entities": [] |
| }, |
| { |
| "index": 5, |
| "text": "From the user's query to relevant workflows.", |
| "entities": [] |
| }, |
| { |
| "index": 6, |
| "text": "A structured model to describe workflows using metadata and provenance in a generic and workflow engine independent format.", |
| "entities": [] |
| }, |
| { |
| "index": 7, |
| "text": "Overview of the features of the BioFlow-Model, compared to the CWL and P-Plan models, and WRROC profiles of RO-Crate.", |
| "entities": [] |
| }, |
| { |
| "index": 8, |
| "text": "For the full version of the model:", |
| "entities": [] |
| } |
| ], |
| "mentions": [], |
| "duration_seconds": 1.54, |
| "model": "csebe_scibert_bioinfo_voc_iteration4_seed100.pt" |
| } |
