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Add DENIM capability extension v4

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Add 1,000 long-cycle, full-3D, AgentFEM-derived and discretization/observation trajectories with checksums and quality evidence.

DENIM_CAPABILITY_V4_SHA256SUMS ADDED
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+ 79265c6bbe4fbeef4f9f8f2923bbf57392e9d08b15ade2c382e9d4dbc358bc1c README.md
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+ 43127dea2e4c342ac230cc941358f70b50f8d9b57af7955c6e1ad185b45ddc77 artifacts/t2_denim_capability_v4/QUALITY_REPORT.md
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+ fa15c3bb35e7ad34cdabfff5bfceae32fb4503529ba95c9ea5bc861a3077c652 artifacts/t2_denim_capability_v4/audit.json
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+ 40dbfe5ac92c84acf207ecf0748cbaf1575fbbb471a7839dac9d1d90dc9606c6 artifacts/t2_denim_capability_v4/capability_extension_preview.png
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+ 4ea985601b0e596d41ed3df747b86b15483deb6b4e249b44b3bca09739ca1add artifacts/t2_denim_capability_v4/capability_summary.json
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+ cc39a7c9fcd1756f80deb5eaacf97082e83c6c1c073657b451c68f1cafba5125 artifacts/t2_denim_capability_v4/quality.json
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+ ac79f463be9a13c7d8382b8ac2465f333bbae65d07c94d0034e5e869bbe55604 configs/t2_denim_capability_v4.json
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+ b6f797a38bfdfa964093fccc844c5ce6a548d630d30cf7f90c152d3cc5990c97 data/t2_denim_capability_v4/README.md
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+ d41b5f62b89f0bd5ad29b6682093add0eeaf0a30fbfd76d7e62f310c039c32f1 data/t2_denim_capability_v4/cohort.h5
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+ 49b454971df8f9b0d4f9311baad211d154240a2c7ced6c4cf6e98b893ca9cc2f data/t2_denim_capability_v4/index.csv
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+ 4a1f97a775d7168f068f2d6e5b21c27a0f1a872b5fe0de63b2f1ce71c713f972 data/t2_denim_capability_v4/index.jsonl
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+ cc39a7c9fcd1756f80deb5eaacf97082e83c6c1c073657b451c68f1cafba5125 data/t2_denim_capability_v4/manifest.json
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+ 4f2f33836b38188f5f0d6c5a309b0764a3eaa1893b2a1b387e4ca56ced9ab9a9 data/t2_denim_capability_v4/structure_bases.npz
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+ 3af402ecc46919436ec2dea1c07426dff8e6782fb10a4dd681e1d3683d89e799 docs/T2_DENIM_CAPABILITY_V4.md
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+ 1fbc923311b7279b10f7db38c7e4e720a9f027b38eca4fb52e34b95b01d6429c src/analyze_t2_denim_capability_v4.py
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+ 038c9018d5c8c154f5cbd2cb00cccca6df7ea18eb97bde7b73e7086524104f7d src/generate_t2_denim_capability_v4.py
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+ 5b6ba71f89aa9b3967327954a7fab047fdbbce270278520802dee99912a43073 tests/test_t2_denim_capability_v4.py
README.md CHANGED
@@ -35,8 +35,11 @@ repository contains four related, explicitly separated research protocols.
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  two-memory DENIM model must learn the missing internal-variable closure.
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  - **T2 DENIM boundary v1:** 500 additional trajectories for training-density,
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  path, amplitude, long-history and integration-resolution boundaries.
 
 
 
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- The repository therefore contains **2,660 complete trajectories**. Releases
40
  are used as a staged evidence chain; they are not presented as 2,660
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  exchangeable samples from one training distribution.
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@@ -107,6 +110,25 @@ Expanded-DENIM RMSE on matched 61/121/481/961-state histories was
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  - Full metrics: `artifacts/t2_denim_boundary_v1/model_metrics.json`
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  - All-data usage: `docs/T2_ALL_DATA_STAGE_SUMMARY.md`
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  ## AgentFEM runtime validation
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  The expanded DENIM checkpoint is also available as a checksum-authenticated
 
35
  two-memory DENIM model must learn the missing internal-variable closure.
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  - **T2 DENIM boundary v1:** 500 additional trajectories for training-density,
37
  path, amplitude, long-history and integration-resolution boundaries.
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+ - **T2 DENIM capability v4:** 1,000 trajectories for 100-cycle horizons,
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+ full six-component loading, AgentFEM-derived structural paths and paired
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+ discretization/noisy-observation tests.
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+ The repository now contains **3,660 complete trajectories**. The original 2,660-role protocol remains frozen; the v4 extension has separate train/validation/test roles and does not retroactively alter published scores. Releases
43
  are used as a staged evidence chain; they are not presented as 2,660
44
  exchangeable samples from one training distribution.
45
 
 
110
  - Full metrics: `artifacts/t2_denim_boundary_v1/model_metrics.json`
111
  - All-data usage: `docs/T2_ALL_DATA_STAGE_SUMMARY.md`
112
 
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+
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+ ## DENIM capability extension v4
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+
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+ ![Capability extension preview](artifacts/t2_denim_capability_v4/capability_extension_preview.png)
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+
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+ The v4 increment adds 1,000 complete trajectories: 300 long-cycle, 300 full
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+ six-component non-proportional, 200 AgentFEM-derived local structural paths and
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+ 200 matched discretization/observation trajectories. The 100-cycle histories
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+ contain 2,001 accepted material states. Fifty continuous paths are integrated
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+ at 61, 121, 241 and 481 states and carry explicit group IDs; noisy and sparse
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+ observations are fields paired with clean truth, not separately counted cases.
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+
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+ The structure-derived cohort uses local strain bases from twelve AgentFEM
126
+ linear-elastic unit-load solves on four perforated/notched plates, followed by
127
+ nonlinear reference-material replay. It does not claim coupled elastoplastic
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+ redistribution. See `data/t2_denim_capability_v4/README.md` for the exact
129
+ protocol and `artifacts/t2_denim_capability_v4/capability_summary.json` for
130
+ machine-readable boundary statistics.
131
+
132
  ## AgentFEM runtime validation
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134
  The expanded DENIM checkpoint is also available as a checksum-authenticated
artifacts/t2_denim_capability_v4/QUALITY_REPORT.md ADDED
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+ # DENIM能力边界扩展v4质量报告
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+
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+ ## 数据规模
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+
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+ - 新增完整轨迹:1,000条;
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+ - 长循环:300条,其中训练10/25循环、验证50循环、测试100循环;
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+ - 完整三维非比例加载:300条,覆盖六个路径族;
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+ - AgentFEM结构来源路径:200条,来自4个几何、12次单位载荷有限元求解;
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+ - 步长与观测鲁棒性:200条,即50个连续路径分别采用61/121/241/481个状态点;
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+ - 正式HDF5大小:111,577,525 bytes;
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+ - 生成时间:450.10 s;AgentFEM提交`40c965225fc3b8d12a93a68e0d6b01dd35d47d82`。
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+
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+ ## 数据完整性和物理门
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+
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+ - 1,000/1,000轨迹组完整,case ID全部唯一;
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+ - 缺失必需字段:0;非有限数组:0;
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+ - 最大屈服面相对残差:`9.35e-11`;
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+ - 塑性应变最大绝对迹:`1.84e-17`;
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+ - PEEQ最小增量:0;
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+ - 每条轨迹至少包含35个塑性增量;
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+ - HDF5 SHA-256:`d41b5f62b89f0bd5ad29b6682093add0eeaf0a30fbfd76d7e62f310c039c32f1`。
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+
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+ ## 能力边界统计
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+
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+ 完整三维队列的中位活跃Voigt分量数为6,83.33%的轨迹六个分量均有显著变化;
26
+ 仅三剪切旋转族按设计只激活三个剪切分量。长循环测试包含80条100循环、每条
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+ 2,001状态的轨迹,终态PEEQ中位值为2.308,属于主动施加的严苛累积塑性压力测试。
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+
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+ 以481点轨迹为参考,配对路径的应力RMSE中位值分别为:61点2.641 MPa、
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+ 121点1.221 MPa、241点0.431 MPa。该结果说明时间步离散误差不可忽略,也使
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+ 数据能够区分模型误差和参考积分误差。
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+
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+ 观测协议实际保留17.4%—73.6%的状态点,中位保留率43.1%;应变噪声相对RMSE
34
+ 中位值为0.184%,应力噪声RMSE中位值为0.886 MPa。干净真值、带噪观测和掩码
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+ 同时保存,噪声副本不计作新的物理轨迹。
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+
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+ ## 结构来源说明
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+
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+ 结构路径来自两种孔径的中心孔板和两种缺口深度的双边缺口板。每个结构由
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+ AgentFEM求解右侧拉伸、右侧剪切和顶部拉伸三个线弹性单位载荷工况,保留50个
41
+ DG0局部应变探针,再组合加载系数并通过隐藏参考材料回放。
42
+
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+ 这种方法提供有限元几何和边界条件产生的局部多轴路径,同时保持生成成本可控。
44
+ 它是单向结构路径提取,不包含塑性变形引起的全局应力重分布,因此不能表述为
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+ 200个完整非线性结构有限元算例。
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+
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+ ## 结论
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+
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+ 本批数据通过完整性和材料积分物理门,并补齐长期状态、六分量加载、结构局部路径、
50
+ 时间离散及不完整观测五类边界。它可直接作为独立测试协议,也可使用明确标记的
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+ 训练/验证子集扩展后续条件化DENIM;既有2,660条冻结协议和已发布模型成绩不改变。
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artifacts/t2_denim_capability_v4/capability_extension_preview.png ADDED

Git LFS Details

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  • Pointer size: 131 Bytes
  • Size of remote file: 519 kB
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+ },
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+ "reference_material": "hidden three-memory Chaboche with tabulated isotropic hardening",
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+ "sample_count": 1000,
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+ "schema": "agentfem.physics-data.denim-capability-extension",
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+ "schema_version": "4.0.0",
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+ "structure_fidelity": "AgentFEM linear-elastic unit-load strain bases with one-way nonlinear material replay; no coupled elastoplastic redistribution claim"
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+ }
configs/t2_denim_capability_v4.json ADDED
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+ },
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+ "families": [
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+ "triaxial_phase_lissajous",
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+ "principal_axis_rotation_3d",
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+ "three_shear_rotation",
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+ "hydro_deviatoric_sequence",
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+ "six_component_random_blocks",
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+ "biaxial_torsion_reversal"
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+ ],
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+ "samples_per_family": 50
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+ },
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+ "points_per_trajectory": 241,
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+ "structures": [
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+ {"name": "central_hole_r018", "kind": "central_hole", "radius": 0.18},
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+ {"name": "central_hole_r026", "kind": "central_hole", "radius": 0.26},
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+ {"name": "double_notch_r016", "kind": "double_edge_notch", "radius": 0.16},
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+ {"name": "double_notch_r024", "kind": "double_edge_notch", "radius": 0.24}
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+ ],
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+ "probe_trajectories_per_structure": 50,
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+ "load_modes": ["right_tension", "right_shear", "top_tension"],
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+ "source_model": "AgentFEM linear-elastic unit-load basis followed by nonlinear reference-material replay"
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+ },
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+ "discretization_and_observation": {
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+ "matched_path_groups": 50,
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+ "resolutions": [61, 121, 241, 481],
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+ "strain_noise_fraction_range": [0.0005, 0.003],
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+ "stress_noise_fraction_range": [0.0005, 0.005],
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+ "observation_keep_fraction_range": [0.2, 0.65]
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+ },
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+ "scope": "Synthetic small-strain, rate-independent material histories from a fixed hidden three-memory tabulated-hardening reference. Structure-derived histories use AgentFEM linear-elastic unit-load bases and one-way constitutive replay; they are not coupled nonlinear structural solutions."
49
+ }
data/t2_denim_capability_v4/README.md ADDED
@@ -0,0 +1,56 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # DENIM Capability Extension v4
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+
3
+ This increment adds 1,000 complete trajectories to the staged AgentFEM
4
+ Material Loading Memory dataset. It targets capability boundaries that were
5
+ underrepresented in the frozen 2,660-trajectory release.
6
+
7
+ ## Cohorts
8
+
9
+ | Cohort | Trajectories | Purpose |
10
+ |---|---:|---|
11
+ | Long-cycle | 300 | 10, 25, 50 and held-out 100-cycle state evolution |
12
+ | Full 3D non-proportional | 300 | Six Voigt components, rotating axes, hydrostatic/deviatoric sequencing and random blocks |
13
+ | Structure-derived | 200 | Local histories from four AgentFEM perforated/notched plate unit-load bases |
14
+ | Discretization and observation | 200 | 50 paths at 61/121/241/481 states with clean truth plus noisy sparse observations |
15
+
16
+ One sample is one complete trajectory. Noise and observation masks are stored
17
+ as additional fields and are not counted as separate physical samples.
18
+ Matched time resolutions share an explicit `group_id` and must remain together
19
+ when constructing evaluation protocols.
20
+
21
+ ## Structure-derived fidelity
22
+
23
+ AgentFEM solves three linear-elastic unit-load cases on each of four 2D
24
+ structures. Local DG0 strain bases are superposed under time-dependent load
25
+ coefficients and replayed through the hidden nonlinear reference material.
26
+ These are genuine finite-element-derived local path shapes, but they do not
27
+ include coupled elastoplastic stress redistribution. They are therefore a
28
+ bridge between hand-designed material-point paths and global nonlinear FEM,
29
+ not a substitute for the latter.
30
+
31
+ ## Main files
32
+
33
+ - `cohort.h5`: lossless trajectories and provenance fields;
34
+ - `index.jsonl` and `index.csv`: viewer-friendly trajectory metadata;
35
+ - `manifest.json`: counts, hashes, physical quality gates and AgentFEM commit;
36
+ - `structure_bases.npz`: the four groups of AgentFEM local strain bases;
37
+ - `configs/t2_denim_capability_v4.json`: frozen design;
38
+ - `src/generate_t2_denim_capability_v4.py`: complete generator;
39
+ - `src/analyze_t2_denim_capability_v4.py`: paired-resolution and observation audit.
40
+
41
+ ## Fields
42
+
43
+ Every trajectory contains tensor-shear Voigt arrays in the order
44
+ `xx, yy, zz, xy, yz, xz`: total strain, stress, plastic strain, two visible
45
+ memory channels, three reference memory channels, PEEQ, plastic increment,
46
+ isotropic radius and normalized history coordinate. Observation trajectories
47
+ also contain `observed_strain`, `observed_stress_pa`, and `observation_mask`.
48
+ Structure-derived trajectories additionally retain the source coordinate,
49
+ cell index, three local unit-load strain bases and load-mode coefficients.
50
+
51
+ ## Scope
52
+
53
+ The data are synthetic, small-strain and rate-independent. The reference is a
54
+ fixed three-memory Chaboche-type material with tabulated isotropic hardening.
55
+ The release is not experimental calibration, fatigue-life data, damage data,
56
+ finite-strain plasticity, or a certified material card.
data/t2_denim_capability_v4/cohort.h5 ADDED
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+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d41b5f62b89f0bd5ad29b6682093add0eeaf0a30fbfd76d7e62f310c039c32f1
3
+ size 111577525
data/t2_denim_capability_v4/index.csv ADDED
The diff for this file is too large to render. See raw diff
 
data/t2_denim_capability_v4/index.jsonl ADDED
The diff for this file is too large to render. See raw diff
 
data/t2_denim_capability_v4/manifest.json ADDED
@@ -0,0 +1,71 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "agentfem_commit": "40c965225fc3b8d12a93a68e0d6b01dd35d47d82",
3
+ "cohort_counts": {
4
+ "discretization_and_observation": 200,
5
+ "full_3d_nonproportional": 300,
6
+ "long_cycle": 300,
7
+ "structure_derived": 200
8
+ },
9
+ "complete_release": true,
10
+ "counting_rule": "One sample is one complete trajectory. Observation noise/masks are fields, not extra samples. Matched resolutions are explicitly grouped.",
11
+ "data_bytes": 111577525,
12
+ "data_sha256": "d41b5f62b89f0bd5ad29b6682093add0eeaf0a30fbfd76d7e62f310c039c32f1",
13
+ "generation_seconds": 450.09614487504587,
14
+ "group_count": 654,
15
+ "index_csv_sha256": "49b454971df8f9b0d4f9311baad211d154240a2c7ced6c4cf6e98b893ca9cc2f",
16
+ "index_jsonl_sha256": "4a1f97a775d7168f068f2d6e5b21c27a0f1a872b5fe0de63b2f1ce71c713f972",
17
+ "path_family_counts": {
18
+ "biaxial_torsion_reversal": 50,
19
+ "fe_random_load_blocks": 40,
20
+ "fe_reversed_mixed_cycle": 40,
21
+ "fe_rotating_load_vector": 40,
22
+ "fe_tension_bending_sequence": 40,
23
+ "fe_tension_shear_lissajous": 40,
24
+ "hydro_deviatoric_sequence": 50,
25
+ "nonproportional_square": 99,
26
+ "orthogonal_cross": 24,
27
+ "out_of_phase_lissajous": 99,
28
+ "principal_axis_rotation_3d": 50,
29
+ "proportional_axial_cycle": 103,
30
+ "proportional_shear_cycle": 28,
31
+ "random_direction_blocks": 24,
32
+ "rotating_principal_cycle": 24,
33
+ "sequential_axial_shear": 99,
34
+ "six_component_random_blocks": 50,
35
+ "three_shear_rotation": 50,
36
+ "triaxial_phase_lissajous": 50
37
+ },
38
+ "point_count_distribution": {
39
+ "1001": 40,
40
+ "121": 50,
41
+ "2001": 80,
42
+ "201": 90,
43
+ "241": 550,
44
+ "481": 50,
45
+ "501": 90,
46
+ "61": 50
47
+ },
48
+ "quality": {
49
+ "all_finite_failures": 0,
50
+ "maximum_plastic_strain_trace": 1.8431436932253575e-17,
51
+ "maximum_yield_surface_relative_residual": 9.34668949672154e-11,
52
+ "minimum_peeq_increment": 0.0,
53
+ "minimum_plastic_step_count": 35
54
+ },
55
+ "reference_material": "hidden three-memory Chaboche with tabulated isotropic hardening",
56
+ "sample_count": 1000,
57
+ "schema": "agentfem.physics-data.denim-capability-extension",
58
+ "schema_version": "4.0.0",
59
+ "split_counts": {
60
+ "test_discretization_observation": 200,
61
+ "test_full_3d_ood": 100,
62
+ "test_long_cycle_ood": 80,
63
+ "test_structure_derived": 200,
64
+ "train_full_3d": 144,
65
+ "train_long_cycle": 180,
66
+ "validation_full_3d": 56,
67
+ "validation_long_cycle": 40
68
+ },
69
+ "structure_bases_sha256": "4f2f33836b38188f5f0d6c5a309b0764a3eaa1893b2a1b387e4ca56ced9ab9a9",
70
+ "structure_fidelity": "AgentFEM linear-elastic unit-load strain bases with one-way nonlinear material replay; no coupled elastoplastic redistribution claim"
71
+ }
data/t2_denim_capability_v4/structure_bases.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4f2f33836b38188f5f0d6c5a309b0764a3eaa1893b2a1b387e4ca56ced9ab9a9
3
+ size 23114
docs/T2_DENIM_CAPABILITY_V4.md ADDED
@@ -0,0 +1,27 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # DENIM能力边界扩展v4
2
+
3
+ 现有2,660条冻结数据已能支撑材料记忆、路径OOD、不完备物理闭合和少样本材料适配。
4
+ 本次新增1,000条,目标从“增加同类曲线”转向补齐明确的工程边界。
5
+
6
+ | 新增队列 | 数量 | 核心价值 |
7
+ |---|---:|---|
8
+ | 长循环 | 300 | 训练10/25循环,验证50循环,冻结测试100循环 |
9
+ | 六分量非比例加载 | 300 | 主轴旋转、三剪切旋转、静水—偏应变切换和六分量随机块 |
10
+ | 结构来源路径 | 200 | 4个带孔/缺口几何的局部有限元应变路径 |
11
+ | 步长与观测鲁棒性 | 200 | 50条路径的4种积分分辨率,并保存带噪稀疏观测 |
12
+
13
+ 数据总量由2,660条增至3,660条。原条件化DENIM v2的1,484/407/769角色继续冻结;
14
+ 本批独立提供324条训练、96条验证和580条边界测试轨迹,后续模型升级应明确区分
15
+ “原协议成绩”和“吸收v4训练子集后的新协议成绩”。
16
+
17
+ 本批最重要的新信息不是数量,而是:100循环的长期演化、六维路径几何、由结构
18
+ 有限元产生的局部加载形状、积分步长误差以及现实观测中的噪声和缺失。结构来源
19
+ 队列采用AgentFEM线弹性单位载荷基加非线性材料回放,未声称包含耦合塑性重分布。
20
+
21
+ 机器证据:
22
+
23
+ - `data/t2_denim_capability_v4/manifest.json`
24
+ - `artifacts/t2_denim_capability_v4/quality.json`
25
+ - `artifacts/t2_denim_capability_v4/audit.json`
26
+ - `artifacts/t2_denim_capability_v4/capability_summary.json`
27
+ - `artifacts/t2_denim_capability_v4/capability_extension_preview.png`
src/analyze_t2_denim_capability_v4.py ADDED
@@ -0,0 +1,184 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Analyze and visualize DENIM capability-extension v4 without model claims."""
2
+
3
+ from __future__ import annotations
4
+
5
+ import json
6
+ from collections import defaultdict
7
+ from pathlib import Path
8
+
9
+ import h5py
10
+ import matplotlib.pyplot as plt
11
+ import numpy as np
12
+
13
+ from src.generate_t2_denim_capability_v4 import (
14
+ ARTIFACT_DIR,
15
+ DATA_PATH,
16
+ INDEX_PATH,
17
+ MANIFEST_PATH,
18
+ _write_json,
19
+ )
20
+
21
+
22
+ ROOT = Path(__file__).resolve().parents[1]
23
+ SUMMARY_PATH = ARTIFACT_DIR / "capability_summary.json"
24
+ PREVIEW_PATH = ARTIFACT_DIR / "capability_extension_preview.png"
25
+
26
+
27
+ def _rmse(left: np.ndarray, right: np.ndarray) -> float:
28
+ return float(np.sqrt(np.mean(np.square(np.asarray(left) - np.asarray(right)))))
29
+
30
+
31
+ def analyze() -> dict[str, object]:
32
+ rows = [json.loads(line) for line in INDEX_PATH.read_text(encoding="utf-8").splitlines() if line]
33
+ manifest = json.loads(MANIFEST_PATH.read_text(encoding="utf-8"))
34
+ by_group: dict[str, list[tuple[int, dict[str, object]]]] = defaultdict(list)
35
+ for index, row in enumerate(rows):
36
+ by_group[str(row["group_id"])].append((index, row))
37
+
38
+ resolution_errors: dict[int, list[float]] = defaultdict(list)
39
+ active_components = []
40
+ observation_keep = []
41
+ strain_noise = []
42
+ stress_noise_mpa = []
43
+ structure_metrics: dict[str, dict[str, float | int]] = {}
44
+ long_metrics: dict[str, list[float]] = defaultdict(list)
45
+
46
+ with h5py.File(DATA_PATH, "r") as h5:
47
+ for group_id, members in by_group.items():
48
+ if not group_id.startswith("matched-resolution-"):
49
+ continue
50
+ reference_index, _ = next((item for item in members if int(item[1]["points"]) == 481))
51
+ reference = h5[f"{reference_index:05d}"]
52
+ reference_time = reference["time_coordinate"][...]
53
+ reference_stress = reference["stress_pa"][...]
54
+ for index, row in members:
55
+ points = int(row["points"])
56
+ group = h5[f"{index:05d}"]
57
+ time = group["time_coordinate"][...]
58
+ stress = group["stress_pa"][...]
59
+ interpolated = np.column_stack(
60
+ [np.interp(time, reference_time, reference_stress[:, component]) for component in range(6)]
61
+ )
62
+ resolution_errors[points].append(_rmse(stress, interpolated) / 1.0e6)
63
+ mask = group["observation_mask"][...].astype(bool)
64
+ observation_keep.append(float(mask.mean()))
65
+ strain_noise.append(
66
+ _rmse(group["observed_strain"][...], group["strain"][...])
67
+ / max(float(np.max(np.abs(group["strain"][...]))), 1.0e-15)
68
+ )
69
+ stress_noise_mpa.append(
70
+ _rmse(group["observed_stress_pa"][...], group["stress_pa"][...]) / 1.0e6
71
+ )
72
+
73
+ for index, row in enumerate(rows):
74
+ group = h5[f"{index:05d}"]
75
+ cohort = str(row["cohort"])
76
+ if cohort == "full_3d_nonproportional":
77
+ strain = group["strain"][...]
78
+ maxima = np.max(np.abs(strain), axis=0)
79
+ threshold = 0.01 * max(float(maxima.max()), 1.0e-15)
80
+ active_components.append(int(np.count_nonzero(maxima > threshold)))
81
+ elif cohort == "structure_derived":
82
+ entry = structure_metrics.setdefault(
83
+ str(row["group_id"]),
84
+ {"trajectory_count": 0, "maximum_peeq": 0.0, "maximum_absolute_stress_mpa": 0.0},
85
+ )
86
+ entry["trajectory_count"] = int(entry["trajectory_count"]) + 1
87
+ entry["maximum_peeq"] = max(float(entry["maximum_peeq"]), float(np.max(group["peeq"][...])))
88
+ entry["maximum_absolute_stress_mpa"] = max(
89
+ float(entry["maximum_absolute_stress_mpa"]),
90
+ float(np.max(np.abs(group["stress_pa"][...]))) / 1.0e6,
91
+ )
92
+ elif cohort == "long_cycle":
93
+ long_metrics[str(row["split"])].append(float(group["peeq"][-1]))
94
+
95
+ summary: dict[str, object] = {
96
+ "schema": "agentfem.physics-data.denim-capability-extension.analysis",
97
+ "sample_count": len(rows),
98
+ "cohort_counts": manifest["cohort_counts"],
99
+ "quality": manifest["quality"],
100
+ "long_cycle_final_peeq": {
101
+ split: {
102
+ "count": len(values),
103
+ "median": float(np.median(values)),
104
+ "maximum": float(np.max(values)),
105
+ }
106
+ for split, values in sorted(long_metrics.items())
107
+ },
108
+ "full_3d_component_coverage": {
109
+ "minimum_active_voigt_components": int(min(active_components)),
110
+ "median_active_voigt_components": float(np.median(active_components)),
111
+ "all_six_components_active_fraction": float(np.mean(np.asarray(active_components) == 6)),
112
+ },
113
+ "structure_derived": structure_metrics,
114
+ "matched_resolution_stress_rmse_mpa_against_481": {
115
+ str(points): {
116
+ "median": float(np.median(values)),
117
+ "maximum": float(np.max(values)),
118
+ }
119
+ for points, values in sorted(resolution_errors.items())
120
+ },
121
+ "observation_protocol": {
122
+ "retained_fraction_minimum": float(np.min(observation_keep)),
123
+ "retained_fraction_median": float(np.median(observation_keep)),
124
+ "retained_fraction_maximum": float(np.max(observation_keep)),
125
+ "relative_strain_noise_rmse_median": float(np.median(strain_noise)),
126
+ "stress_noise_rmse_mpa_median": float(np.median(stress_noise_mpa)),
127
+ },
128
+ }
129
+ _write_json(SUMMARY_PATH, summary)
130
+ return summary
131
+
132
+
133
+ def plot() -> Path:
134
+ ARTIFACT_DIR.mkdir(parents=True, exist_ok=True)
135
+ with h5py.File(DATA_PATH, "r") as h5:
136
+ long = h5["00299"]
137
+ full3d = h5["00300"]
138
+ structural = h5["00600"]
139
+ observed = h5["00801"]
140
+
141
+ figure, axes = plt.subplots(2, 2, figsize=(13.0, 8.2), constrained_layout=True)
142
+
143
+ axes[0, 0].plot(long["time_coordinate"][...], long["stress_pa"][:, 0] / 1.0e6, lw=1.0, color="#1f6feb")
144
+ axes[0, 0].set_title("100-cycle long-horizon response")
145
+ axes[0, 0].set_xlabel("normalized history coordinate")
146
+ axes[0, 0].set_ylabel(r"$\sigma_{xx}$ (MPa)")
147
+
148
+ strain = full3d["strain"][...]
149
+ labels = ("xx", "yy", "zz", "xy", "yz", "xz")
150
+ for component, label in enumerate(labels):
151
+ axes[0, 1].plot(full3d["time_coordinate"][...], 100.0 * strain[:, component], lw=1.1, label=label)
152
+ axes[0, 1].set_title("Full six-component non-proportional path")
153
+ axes[0, 1].set_xlabel("normalized history coordinate")
154
+ axes[0, 1].set_ylabel("tensor strain (%)")
155
+ axes[0, 1].legend(ncol=3, fontsize=8, frameon=False)
156
+
157
+ axes[1, 0].plot(100.0 * structural["strain"][:, 0], structural["stress_pa"][:, 0] / 1.0e6, lw=1.5, color="#d97706")
158
+ axes[1, 0].set_title("AgentFEM-derived local structural path")
159
+ axes[1, 0].set_xlabel(r"$\varepsilon_{xx}$ (%)")
160
+ axes[1, 0].set_ylabel(r"$\sigma_{xx}$ (MPa)")
161
+
162
+ time = observed["time_coordinate"][...]
163
+ mask = observed["observation_mask"][...].astype(bool)
164
+ axes[1, 1].plot(time, observed["stress_pa"][:, 0] / 1.0e6, lw=1.5, color="#22c55e", label="clean truth")
165
+ axes[1, 1].scatter(
166
+ time[mask], observed["observed_stress_pa"][mask, 0] / 1.0e6,
167
+ s=10, alpha=0.65, color="#ef4444", label="noisy sparse observation",
168
+ )
169
+ axes[1, 1].set_title("Paired observation robustness protocol")
170
+ axes[1, 1].set_xlabel("normalized history coordinate")
171
+ axes[1, 1].set_ylabel(r"$\sigma_{xx}$ (MPa)")
172
+ axes[1, 1].legend(frameon=False, fontsize=8)
173
+
174
+ for axis in axes.ravel():
175
+ axis.grid(alpha=0.20)
176
+ figure.suptitle("AgentFEM DENIM capability extension v4", fontsize=16, fontweight="bold")
177
+ figure.savefig(PREVIEW_PATH, dpi=180)
178
+ plt.close(figure)
179
+ return PREVIEW_PATH
180
+
181
+
182
+ if __name__ == "__main__":
183
+ print(json.dumps(analyze(), indent=2, sort_keys=True))
184
+ print(plot())
src/generate_t2_denim_capability_v4.py ADDED
@@ -0,0 +1,824 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Generate the 1,000-trajectory DENIM capability extension v4.
2
+
3
+ The extension targets four gaps left by the frozen 2,660-trajectory release:
4
+ long-cycle state drift, full six-component loading, finite-element-derived local
5
+ paths, and paired time-discretization/observation robustness. Existing data
6
+ and splits are never overwritten. One sample remains one complete history.
7
+
8
+ The structure-derived cohort is deliberately explicit about its fidelity: an
9
+ AgentFEM linear-elastic solve supplies three local unit-load strain bases for
10
+ four perforated/notched plates. Time-dependent load coefficients are then
11
+ superposed and replayed through the same nonlinear hidden reference material
12
+ used by the DENIM closure study. This produces genuine FE-derived local path
13
+ shapes without claiming fully coupled elastoplastic redistribution.
14
+ """
15
+
16
+ from __future__ import annotations
17
+
18
+ import argparse
19
+ import csv
20
+ import hashlib
21
+ import json
22
+ import math
23
+ import os
24
+ import subprocess
25
+ import time
26
+ from collections import Counter
27
+ from pathlib import Path
28
+ from typing import Iterable
29
+
30
+ import h5py
31
+ import numpy as np
32
+
33
+ from src.generate_t2_denim_boundary_v1 import quality as boundary_quality
34
+ from src.generate_t2_graybox_closure import MATERIAL, material
35
+ from src.t2_multiaxial_ood_v2 import PATH_FAMILIES, strain_history, tensor_to_voigt
36
+
37
+
38
+ ROOT = Path(__file__).resolve().parents[1]
39
+ CONFIG_PATH = ROOT / "configs" / "t2_denim_capability_v4.json"
40
+ DATA_DIR = ROOT / "data" / "t2_denim_capability_v4"
41
+ DATA_PATH = DATA_DIR / "cohort.h5"
42
+ INDEX_PATH = DATA_DIR / "index.jsonl"
43
+ INDEX_CSV_PATH = DATA_DIR / "index.csv"
44
+ MANIFEST_PATH = DATA_DIR / "manifest.json"
45
+ STRUCTURE_BASIS_PATH = DATA_DIR / "structure_bases.npz"
46
+ ARTIFACT_DIR = ROOT / "artifacts" / "t2_denim_capability_v4"
47
+ AGENTFEM_ROOT = Path("/Users/luo/Desktop/开发环境/fenicsx-code/agentfem")
48
+
49
+ FULL_3D_FAMILIES = (
50
+ "triaxial_phase_lissajous",
51
+ "principal_axis_rotation_3d",
52
+ "three_shear_rotation",
53
+ "hydro_deviatoric_sequence",
54
+ "six_component_random_blocks",
55
+ "biaxial_torsion_reversal",
56
+ )
57
+ RESOLUTIONS = (61, 121, 241, 481)
58
+ STRUCTURE_SPECS = (
59
+ ("central_hole_r018", "central_hole", 0.18),
60
+ ("central_hole_r026", "central_hole", 0.26),
61
+ ("double_notch_r016", "double_edge_notch", 0.16),
62
+ ("double_notch_r024", "double_edge_notch", 0.24),
63
+ )
64
+
65
+
66
+ def load_config() -> dict[str, object]:
67
+ return json.loads(CONFIG_PATH.read_text(encoding="utf-8"))
68
+
69
+
70
+ def _sha256(path: Path) -> str:
71
+ digest = hashlib.sha256()
72
+ with path.open("rb") as handle:
73
+ for block in iter(lambda: handle.read(1024 * 1024), b""):
74
+ digest.update(block)
75
+ return digest.hexdigest()
76
+
77
+
78
+ def _write_json(path: Path, value: object) -> None:
79
+ path.parent.mkdir(parents=True, exist_ok=True)
80
+ temporary = path.with_suffix(path.suffix + ".tmp")
81
+ temporary.write_text(json.dumps(value, indent=2, sort_keys=True) + "\n", encoding="utf-8")
82
+ os.replace(temporary, path)
83
+
84
+
85
+ def _polyline(anchors: np.ndarray, count: int) -> np.ndarray:
86
+ anchors = np.asarray(anchors, dtype=float)
87
+ distances = np.linalg.norm(np.diff(anchors, axis=0), axis=1)
88
+ cumulative = np.concatenate(([0.0], np.cumsum(distances)))
89
+ if cumulative[-1] <= 0.0:
90
+ return np.repeat(anchors[:1], count, axis=0)
91
+ target = np.linspace(0.0, cumulative[-1], count)
92
+ return np.column_stack(
93
+ [np.interp(target, cumulative, anchors[:, column]) for column in range(anchors.shape[1])]
94
+ )
95
+
96
+
97
+ def _symmetric_from_voigt(values: np.ndarray) -> np.ndarray:
98
+ selected = np.asarray(values, dtype=float)
99
+ tensor = np.zeros((*selected.shape[:-1], 3, 3), dtype=float)
100
+ tensor[..., 0, 0] = selected[..., 0]
101
+ tensor[..., 1, 1] = selected[..., 1]
102
+ tensor[..., 2, 2] = selected[..., 2]
103
+ tensor[..., 0, 1] = tensor[..., 1, 0] = selected[..., 3]
104
+ tensor[..., 1, 2] = tensor[..., 2, 1] = selected[..., 4]
105
+ tensor[..., 0, 2] = tensor[..., 2, 0] = selected[..., 5]
106
+ return tensor
107
+
108
+
109
+ def _equivalent_strain(strains: np.ndarray) -> np.ndarray:
110
+ selected = np.asarray(strains, dtype=float)
111
+ trace = np.trace(selected, axis1=-2, axis2=-1)[..., None, None]
112
+ dev = selected - trace / 3.0 * np.eye(3)
113
+ return np.sqrt(np.maximum(2.0 / 3.0 * np.sum(dev * dev, axis=(-2, -1)), 0.0))
114
+
115
+
116
+ def _scale_history(strains: np.ndarray, amplitude: float) -> np.ndarray:
117
+ selected = np.asarray(strains, dtype=float)
118
+ selected = 0.5 * (selected + np.swapaxes(selected, -1, -2))
119
+ scale = float(np.max(_equivalent_strain(selected)))
120
+ if scale <= np.finfo(float).eps:
121
+ raise ValueError("History has zero equivalent-strain amplitude.")
122
+ return selected * (float(amplitude) / scale)
123
+
124
+
125
+ def _base_parameters(
126
+ *, index: int, family: str, amplitude: float, seed: int, points: int
127
+ ) -> dict[str, object]:
128
+ rng = np.random.default_rng(seed)
129
+ return {
130
+ **MATERIAL,
131
+ "case_id": f"denim-capability-v4-{index:05d}",
132
+ "material_model": "hidden_three_memory_tabulated_hardening",
133
+ "path_family": family,
134
+ "path_seed": int(seed),
135
+ "path_shape_a": float(rng.random()),
136
+ "path_shape_b": float(rng.random()),
137
+ "path_shape_c": float(rng.random()),
138
+ "yield_design_coordinate": float(rng.random()),
139
+ "maximum_equivalent_strain": float(amplitude),
140
+ "points": int(points),
141
+ }
142
+
143
+
144
+ def design(seed: int = 20260925) -> list[dict[str, object]]:
145
+ """Create exactly 1,000 deterministic records with frozen cohort roles."""
146
+
147
+ rng = np.random.default_rng(seed)
148
+ rows: list[dict[str, object]] = []
149
+
150
+ # 300 long-cycle histories. Training sees 10/25 cycles, validation 50,
151
+ # and the frozen test remains a true 100-cycle horizon extrapolation.
152
+ long_roles = (
153
+ (180, "train_long_cycle", (10, 25)),
154
+ (40, "validation_long_cycle", (50,)),
155
+ (80, "test_long_cycle_ood", (100,)),
156
+ )
157
+ for count, split, cycle_options in long_roles:
158
+ for local in range(count):
159
+ cycles = int(cycle_options[local % len(cycle_options)])
160
+ points = cycles * 20 + 1
161
+ family = PATH_FAMILIES[(len(rows) + local) % len(PATH_FAMILIES)]
162
+ row = _base_parameters(
163
+ index=len(rows),
164
+ family=family,
165
+ amplitude=float(rng.uniform(0.003, 0.010)),
166
+ seed=int(seed + len(rows) * 104729),
167
+ points=points,
168
+ )
169
+ row.update(
170
+ cohort="long_cycle",
171
+ split=split,
172
+ group_id=row["case_id"],
173
+ cycle_count=cycles,
174
+ increments_per_cycle=20,
175
+ observation_protocol="clean",
176
+ )
177
+ rows.append(row)
178
+
179
+ # 300 full six-component histories. Four families are available to train,
180
+ # principal-axis rotation validates, and random six-component blocks are
181
+ # held out as a shape-OOD family.
182
+ for family in FULL_3D_FAMILIES:
183
+ for local in range(50):
184
+ if family in FULL_3D_FAMILIES[:4]:
185
+ split = "train_full_3d" if local < 36 else "validation_full_3d"
186
+ elif family == "principal_axis_rotation_3d":
187
+ split = "validation_full_3d"
188
+ else:
189
+ split = "test_full_3d_ood"
190
+ row = _base_parameters(
191
+ index=len(rows),
192
+ family=family,
193
+ amplitude=float(rng.uniform(0.003, 0.014)),
194
+ seed=int(seed + len(rows) * 130363),
195
+ points=241,
196
+ )
197
+ row.update(
198
+ cohort="full_3d_nonproportional",
199
+ split=split,
200
+ group_id=row["case_id"],
201
+ cycle_count=1,
202
+ observation_protocol="clean",
203
+ )
204
+ rows.append(row)
205
+
206
+ # 200 structure-derived probe histories, 50 from each FE source group.
207
+ for structure_name, structure_kind, radius in STRUCTURE_SPECS:
208
+ for probe_index in range(50):
209
+ family = (
210
+ "fe_tension_shear_lissajous",
211
+ "fe_tension_bending_sequence",
212
+ "fe_reversed_mixed_cycle",
213
+ "fe_random_load_blocks",
214
+ "fe_rotating_load_vector",
215
+ )[probe_index % 5]
216
+ row = _base_parameters(
217
+ index=len(rows),
218
+ family=family,
219
+ amplitude=float(rng.uniform(0.003, 0.012)),
220
+ seed=int(seed + len(rows) * 15485863),
221
+ points=241,
222
+ )
223
+ row.update(
224
+ cohort="structure_derived",
225
+ split="test_structure_derived",
226
+ group_id=structure_name,
227
+ structure_name=structure_name,
228
+ structure_kind=structure_kind,
229
+ structure_radius=float(radius),
230
+ probe_index=int(probe_index),
231
+ cycle_count=1,
232
+ observation_protocol="clean",
233
+ )
234
+ rows.append(row)
235
+
236
+ # 50 unique continuous paths at four matched resolutions = 200 records.
237
+ # Noise and sparse observation masks are fields, not extra fake samples.
238
+ for matched_index in range(50):
239
+ family = PATH_FAMILIES[matched_index % len(PATH_FAMILIES)]
240
+ shared_seed = int(seed + 900_000 + matched_index * 32452843)
241
+ shared_rng = np.random.default_rng(shared_seed)
242
+ amplitude = float(shared_rng.uniform(0.003, 0.012))
243
+ shared_shapes = shared_rng.random(3)
244
+ for points in RESOLUTIONS:
245
+ row = _base_parameters(
246
+ index=len(rows),
247
+ family=family,
248
+ amplitude=amplitude,
249
+ seed=shared_seed,
250
+ points=points,
251
+ )
252
+ row["path_shape_a"], row["path_shape_b"], row["path_shape_c"] = (
253
+ float(value) for value in shared_shapes
254
+ )
255
+ row.update(
256
+ cohort="discretization_and_observation",
257
+ split="test_discretization_observation",
258
+ group_id=f"matched-resolution-{matched_index:03d}",
259
+ matched_path_id=f"matched-resolution-{matched_index:03d}",
260
+ cycle_count=1,
261
+ observation_protocol="noisy_sparse_paired",
262
+ strain_noise_fraction=float(shared_rng.uniform(0.0005, 0.0030)),
263
+ stress_noise_fraction=float(shared_rng.uniform(0.0005, 0.0050)),
264
+ observation_keep_fraction=float(shared_rng.uniform(0.20, 0.65)),
265
+ )
266
+ rows.append(row)
267
+
268
+ if len(rows) != 1000:
269
+ raise RuntimeError(f"Capability extension must contain 1,000 rows, got {len(rows)}.")
270
+ if len({str(row["case_id"]) for row in rows}) != len(rows):
271
+ raise RuntimeError("Case IDs are not unique.")
272
+ return rows
273
+
274
+
275
+ def _long_cycle_history(row: dict[str, object]) -> np.ndarray:
276
+ cycles = int(row["cycle_count"])
277
+ per_cycle = int(row["increments_per_cycle"]) + 1
278
+ _, one_cycle = strain_history(row, points=per_cycle)
279
+ pieces = [one_cycle]
280
+ pieces.extend(one_cycle[1:] for _ in range(cycles - 1))
281
+ history = np.concatenate(pieces, axis=0)
282
+ if len(history) != int(row["points"]):
283
+ raise RuntimeError("Long-cycle path length does not match the design.")
284
+ return history
285
+
286
+
287
+ def _rotation(axis: np.ndarray, angle: np.ndarray) -> np.ndarray:
288
+ axis = np.asarray(axis, dtype=float)
289
+ axis /= np.linalg.norm(axis)
290
+ cross = np.asarray(
291
+ ((0.0, -axis[2], axis[1]), (axis[2], 0.0, -axis[0]), (-axis[1], axis[0], 0.0))
292
+ )
293
+ outer = np.outer(axis, axis)
294
+ rotations = []
295
+ for value in np.asarray(angle, dtype=float):
296
+ rotations.append(
297
+ np.cos(value) * np.eye(3)
298
+ + (1.0 - np.cos(value)) * outer
299
+ + np.sin(value) * cross
300
+ )
301
+ return np.asarray(rotations)
302
+
303
+
304
+ def _full_3d_history(row: dict[str, object]) -> np.ndarray:
305
+ count = int(row["points"])
306
+ time_coordinate = np.linspace(0.0, 1.0, count)
307
+ phase = 2.0 * np.pi * time_coordinate
308
+ family = str(row["path_family"])
309
+ a = float(row["path_shape_a"])
310
+ b = float(row["path_shape_b"])
311
+ c = float(row["path_shape_c"])
312
+ rng = np.random.default_rng(int(row["path_seed"]))
313
+
314
+ if family == "triaxial_phase_lissajous":
315
+ values = np.column_stack(
316
+ (
317
+ np.sin(phase),
318
+ 0.75 * np.sin(2.0 * phase + 0.3 + a),
319
+ 0.55 * np.sin(3.0 * phase + 0.7 + b),
320
+ 0.45 * np.sin(phase + np.pi / 3.0),
321
+ 0.35 * np.sin(2.0 * phase + np.pi / 5.0),
322
+ 0.30 * np.sin(3.0 * phase + np.pi / 7.0),
323
+ )
324
+ )
325
+ return _scale_history(_symmetric_from_voigt(values), float(row["maximum_equivalent_strain"]))
326
+
327
+ if family == "principal_axis_rotation_3d":
328
+ principal = np.column_stack(
329
+ (
330
+ np.sin(phase),
331
+ -0.55 * np.sin(phase),
332
+ -0.45 * np.sin(phase),
333
+ )
334
+ )
335
+ rotations = _rotation(np.asarray((1.0, 1.0 + a, 0.5 + b)), 2.0 * phase)
336
+ diagonal = np.asarray([np.diag(value) for value in principal])
337
+ tensors = np.einsum("nij,njk,nlk->nil", rotations, diagonal, rotations)
338
+ return _scale_history(tensors, float(row["maximum_equivalent_strain"]))
339
+
340
+ if family == "three_shear_rotation":
341
+ values = np.column_stack(
342
+ (
343
+ np.zeros(count),
344
+ np.zeros(count),
345
+ np.zeros(count),
346
+ np.sin(phase),
347
+ np.sin(phase + 2.0 * np.pi / 3.0),
348
+ np.sin(phase + 4.0 * np.pi / 3.0),
349
+ )
350
+ )
351
+ return _scale_history(_symmetric_from_voigt(values), float(row["maximum_equivalent_strain"]))
352
+
353
+ if family == "hydro_deviatoric_sequence":
354
+ amplitude = 0.6 + 0.4 * a
355
+ anchors = np.asarray(
356
+ (
357
+ (0, 0, 0, 0, 0, 0),
358
+ (1, 1, 1, 0, 0, 0),
359
+ (1 + amplitude, 1 - amplitude, 1, 0, 0, 0),
360
+ (-0.7, -0.7, -0.7, 0.6, 0, 0),
361
+ (0.8, -0.4, -0.4, 0, 0.55, 0.35),
362
+ (0, 0, 0, 0, 0, 0),
363
+ ),
364
+ dtype=float,
365
+ )
366
+ return _scale_history(_symmetric_from_voigt(_polyline(anchors, count)), float(row["maximum_equivalent_strain"]))
367
+
368
+ if family == "six_component_random_blocks":
369
+ directions = rng.normal(size=(9, 6))
370
+ directions /= np.linalg.norm(directions, axis=1, keepdims=True)
371
+ directions[1::2] *= -1.0
372
+ directions[:, :3] += 0.15 * rng.normal(size=(9, 1))
373
+ anchors = np.vstack((np.zeros(6), directions, np.zeros(6)))
374
+ return _scale_history(_symmetric_from_voigt(_polyline(anchors, count)), float(row["maximum_equivalent_strain"]))
375
+
376
+ if family == "biaxial_torsion_reversal":
377
+ ratio = 0.4 + 0.4 * c
378
+ anchors = np.asarray(
379
+ (
380
+ (0, 0, 0, 0, 0, 0),
381
+ (1, -0.4, 0, ratio, 0, 0),
382
+ (-0.8, 0.5, 0, ratio, 0.5, 0),
383
+ (0.6, 0.2, -0.5, -ratio, 0, 0.45),
384
+ (-0.5, -0.3, 0.4, 0, -0.55, -0.25),
385
+ (0, 0, 0, 0, 0, 0),
386
+ ),
387
+ dtype=float,
388
+ )
389
+ return _scale_history(_symmetric_from_voigt(_polyline(anchors, count)), float(row["maximum_equivalent_strain"]))
390
+
391
+ raise ValueError(f"Unknown full-3D family: {family}")
392
+
393
+
394
+ def _load_coefficients(row: dict[str, object]) -> np.ndarray:
395
+ count = int(row["points"])
396
+ t = np.linspace(0.0, 1.0, count)
397
+ phase = 2.0 * np.pi * t
398
+ family = str(row["path_family"])
399
+ rng = np.random.default_rng(int(row["path_seed"]))
400
+ if family == "fe_tension_shear_lissajous":
401
+ return np.column_stack((np.sin(phase), 0.75 * np.sin(2.0 * phase + 0.4), 0.35 * np.sin(phase + 1.1)))
402
+ if family == "fe_tension_bending_sequence":
403
+ return _polyline(np.asarray(((0, 0, 0), (1, 0, 0), (0.6, 0, 0.8), (-0.5, 0.7, 0.6), (0, 0, 0))), count)
404
+ if family == "fe_reversed_mixed_cycle":
405
+ return _polyline(np.asarray(((0, 0, 0), (1, 0.4, 0), (-0.8, 0.4, 0.5), (0.7, -0.6, -0.4), (-0.4, 0.3, 0.7), (0, 0, 0))), count)
406
+ if family == "fe_random_load_blocks":
407
+ anchors = rng.normal(size=(8, 3))
408
+ anchors /= np.maximum(np.linalg.norm(anchors, axis=1, keepdims=True), 1.0e-15)
409
+ anchors[1::2] *= -1.0
410
+ return _polyline(np.vstack((np.zeros(3), anchors, np.zeros(3))), count)
411
+ if family == "fe_rotating_load_vector":
412
+ return np.column_stack((np.sin(phase), np.cos(phase) - 1.0, 0.6 * np.sin(2.0 * phase)))
413
+ raise ValueError(f"Unknown FE load-coefficient family: {family}")
414
+
415
+
416
+ def _make_gmsh_domain(kind: str, radius: float):
417
+ import gmsh
418
+
419
+ from agentfem import mesh
420
+
421
+ if not gmsh.isInitialized():
422
+ gmsh.initialize()
423
+ gmsh.clear()
424
+ gmsh.option.setNumber("General.Terminal", 0)
425
+ gmsh.model.add(f"denim_v4_{kind}_{radius:.3f}")
426
+ length, height = 2.0, 1.0
427
+ plate = gmsh.model.occ.addRectangle(0.0, 0.0, 0.0, length, height)
428
+ if kind == "central_hole":
429
+ tool = gmsh.model.occ.addDisk(1.0, 0.5, 0.0, radius, radius)
430
+ surfaces, _ = gmsh.model.occ.cut([(2, plate)], [(2, tool)])
431
+ elif kind == "double_edge_notch":
432
+ lower = gmsh.model.occ.addDisk(1.0, 0.0, 0.0, radius, radius)
433
+ upper = gmsh.model.occ.addDisk(1.0, 1.0, 0.0, radius, radius)
434
+ surfaces, _ = gmsh.model.occ.cut([(2, plate)], [(2, lower), (2, upper)])
435
+ else:
436
+ raise ValueError(f"Unknown structure kind: {kind}")
437
+ gmsh.model.occ.synchronize()
438
+ gmsh.model.addPhysicalGroup(2, [tag for _, tag in surfaces], 1)
439
+ gmsh.option.setNumber("Mesh.MeshSizeMin", 0.045)
440
+ gmsh.option.setNumber("Mesh.MeshSizeMax", 0.10)
441
+ gmsh.model.mesh.generate(2)
442
+ return mesh.import_gmsh_model(gmsh.model, gdim=2).domain
443
+
444
+
445
+ def _solve_unit_strain(domain, *, traction: tuple[float, float], side: str) -> tuple[np.ndarray, np.ndarray]:
446
+ from agentfem import constitutive, fields, mesh, models, studies
447
+ from agentfem.solvers import LinearSolverOptions
448
+
449
+ model = models.create(
450
+ study=studies.static_solid(dimension=2, assumption="plane_stress"),
451
+ mesh=domain,
452
+ )
453
+ displacement = model.field(fields.displacement(domain, degree=1))
454
+ model.material(constitutive.isotropic_elastic(young=190.0e9, poisson=0.30, density=7800.0))
455
+ left = mesh.boundary(domain, lambda x: np.isclose(x[0], 0.0), tag=101)
456
+ model.fix(displacement, on=left, value=0.0)
457
+ if side == "right":
458
+ boundary = mesh.boundary(domain, lambda x: np.isclose(x[0], 2.0), tag=102)
459
+ elif side == "top":
460
+ boundary = mesh.boundary(domain, lambda x: np.isclose(x[1], 1.0), tag=103)
461
+ else:
462
+ raise ValueError(f"Unknown loaded side: {side}")
463
+ model.traction(traction, on=boundary)
464
+ result = model.step(
465
+ target=displacement,
466
+ solver_options=LinearSolverOptions(ksp_type="preonly", pc_type="lu"),
467
+ ).solve_result(field_variables=("E",))
468
+ result.verify("engineering").require()
469
+ field = result.fields["E"].field
470
+ coordinates = field.function_space.tabulate_dof_coordinates()
471
+ raw = np.asarray(field.x.array, dtype=float).reshape((-1, 4))
472
+ tensor = np.zeros((len(raw), 3, 3), dtype=float)
473
+ tensor[:, 0, 0] = raw[:, 0]
474
+ tensor[:, 0, 1] = tensor[:, 1, 0] = 0.5 * (raw[:, 1] + raw[:, 2])
475
+ tensor[:, 1, 1] = raw[:, 3]
476
+ return np.asarray(coordinates, dtype=float), tensor
477
+
478
+
479
+ def build_structure_bases(*, force: bool = False) -> dict[str, dict[str, np.ndarray]]:
480
+ """Solve 12 AgentFEM unit-load cases and retain 50 probe bases per structure."""
481
+
482
+ if STRUCTURE_BASIS_PATH.exists() and not force:
483
+ loaded = np.load(STRUCTURE_BASIS_PATH, allow_pickle=False)
484
+ result: dict[str, dict[str, np.ndarray]] = {}
485
+ for name, _, _ in STRUCTURE_SPECS:
486
+ result[name] = {
487
+ "coordinates": loaded[f"{name}__coordinates"],
488
+ "basis": loaded[f"{name}__basis"],
489
+ "cell_indices": loaded[f"{name}__cell_indices"],
490
+ }
491
+ return result
492
+
493
+ collected: dict[str, np.ndarray] = {}
494
+ result = {}
495
+ for name, kind, radius in STRUCTURE_SPECS:
496
+ domain = _make_gmsh_domain(kind, radius)
497
+ mode_outputs = (
498
+ _solve_unit_strain(domain, traction=(1.0e6, 0.0), side="right"),
499
+ _solve_unit_strain(domain, traction=(0.0, 1.0e6), side="right"),
500
+ _solve_unit_strain(domain, traction=(0.0, 1.0e6), side="top"),
501
+ )
502
+ coordinates = mode_outputs[0][0]
503
+ if any(not np.allclose(coordinates, item[0]) for item in mode_outputs[1:]):
504
+ raise RuntimeError("DG0 strain-field coordinates changed between unit-load modes.")
505
+ bases = np.stack([item[1] for item in mode_outputs], axis=1)
506
+ score = np.linalg.norm(bases.reshape((len(bases), -1)), axis=1)
507
+ valid = np.flatnonzero(score > np.quantile(score, 0.20))
508
+ order = valid[np.argsort(score[valid])]
509
+ positions = np.linspace(0, len(order) - 1, 50).round().astype(int)
510
+ selected = order[positions]
511
+ selected_coordinates = coordinates[selected]
512
+ selected_bases = bases[selected]
513
+ result[name] = {
514
+ "coordinates": selected_coordinates,
515
+ "basis": selected_bases,
516
+ "cell_indices": selected.astype(np.int64),
517
+ }
518
+ collected[f"{name}__coordinates"] = selected_coordinates
519
+ collected[f"{name}__basis"] = selected_bases
520
+ collected[f"{name}__cell_indices"] = selected.astype(np.int64)
521
+ DATA_DIR.mkdir(parents=True, exist_ok=True)
522
+ np.savez_compressed(STRUCTURE_BASIS_PATH, **collected)
523
+ return result
524
+
525
+
526
+ def _structure_history(row: dict[str, object], bases: dict[str, dict[str, np.ndarray]]) -> tuple[np.ndarray, dict[str, np.ndarray]]:
527
+ source = bases[str(row["structure_name"])]
528
+ probe = int(row["probe_index"])
529
+ basis = source["basis"][probe]
530
+ coefficients = _load_coefficients(row)
531
+ strains = np.einsum("nm,mij->nij", coefficients, basis)
532
+ strains = _scale_history(strains, float(row["maximum_equivalent_strain"]))
533
+ metadata = {
534
+ "source_strain_basis": tensor_to_voigt(basis),
535
+ "load_mode_coefficients": coefficients,
536
+ "source_coordinate": source["coordinates"][probe],
537
+ "source_cell_index": np.asarray([source["cell_indices"][probe]], dtype=np.int64),
538
+ }
539
+ return strains, metadata
540
+
541
+
542
+ def _standard_history(row: dict[str, object]) -> np.ndarray:
543
+ _, strains = strain_history(row, points=int(row["points"]))
544
+ return strains
545
+
546
+
547
+ def _integrate_reference(strains: np.ndarray) -> dict[str, np.ndarray]:
548
+ law = material()
549
+ count = len(strains)
550
+ stress = np.empty_like(strains)
551
+ plastic = np.empty_like(strains)
552
+ peeq = np.empty(count)
553
+ increment = np.empty(count)
554
+ truth_memories = np.empty((count, 3, 3, 3))
555
+ latent_memories = np.empty((count, 2, 3, 3))
556
+ radius = np.empty(count)
557
+ state = None
558
+ for point, strain in enumerate(strains):
559
+ update = law.update(strain, state, linearization="none")
560
+ state = update.state
561
+ stress[point] = update.stress
562
+ plastic[point] = state.plastic_strain
563
+ peeq[point] = state.equivalent_plastic_strain
564
+ increment[point] = update.plastic_multiplier_increment
565
+ truth_memories[point] = state.backstresses
566
+ latent_memories[point, 0] = state.backstresses[0]
567
+ latent_memories[point, 1] = state.backstresses[1] + state.backstresses[2]
568
+ radius[point] = law.current_yield_stress(peeq[point]) - law.yield_stress
569
+ return {
570
+ "strain": tensor_to_voigt(strains),
571
+ "stress_pa": tensor_to_voigt(stress),
572
+ "plastic_strain": tensor_to_voigt(plastic),
573
+ "peeq": peeq,
574
+ "plastic_increment": increment,
575
+ "memories_pa": tensor_to_voigt(latent_memories),
576
+ "truth_memories_pa": tensor_to_voigt(truth_memories),
577
+ "isotropic_radius_pa": radius,
578
+ "time_coordinate": np.linspace(0.0, 1.0, count),
579
+ }
580
+
581
+
582
+ def _add_observations(row: dict[str, object], arrays: dict[str, np.ndarray]) -> None:
583
+ if row["cohort"] != "discretization_and_observation":
584
+ return
585
+ rng = np.random.default_rng(int(row["path_seed"]) + int(row["points"]) * 1009)
586
+ strain = arrays["strain"]
587
+ stress = arrays["stress_pa"]
588
+ strain_scale = max(float(np.max(np.abs(strain))), 1.0e-12)
589
+ stress_scale = max(float(np.max(np.abs(stress))), 1.0)
590
+ observed_strain = strain + rng.normal(
591
+ scale=float(row["strain_noise_fraction"]) * strain_scale,
592
+ size=strain.shape,
593
+ )
594
+ observed_stress = stress + rng.normal(
595
+ scale=float(row["stress_noise_fraction"]) * stress_scale,
596
+ size=stress.shape,
597
+ )
598
+ keep = float(row["observation_keep_fraction"])
599
+ mask = rng.random(len(strain)) < keep
600
+ mask[0] = True
601
+ mask[-1] = True
602
+ arrays["observed_strain"] = observed_strain
603
+ arrays["observed_stress_pa"] = observed_stress
604
+ arrays["observation_mask"] = mask.astype(np.uint8)
605
+
606
+
607
+ def solve_row(row: dict[str, object], bases: dict[str, dict[str, np.ndarray]]) -> tuple[dict[str, np.ndarray], dict[str, float | bool]]:
608
+ cohort = str(row["cohort"])
609
+ extras: dict[str, np.ndarray] = {}
610
+ if cohort == "long_cycle":
611
+ strains = _long_cycle_history(row)
612
+ elif cohort == "full_3d_nonproportional":
613
+ strains = _full_3d_history(row)
614
+ elif cohort == "structure_derived":
615
+ strains, extras = _structure_history(row, bases)
616
+ elif cohort == "discretization_and_observation":
617
+ strains = _standard_history(row)
618
+ else:
619
+ raise ValueError(f"Unknown cohort: {cohort}")
620
+ arrays = _integrate_reference(strains)
621
+ arrays.update(extras)
622
+ _add_observations(row, arrays)
623
+ metrics = boundary_quality(arrays)
624
+ metrics["maximum_equivalent_total_strain"] = float(np.max(_equivalent_strain(strains)))
625
+ metrics["trajectory_point_count"] = int(len(strains))
626
+ metrics["plastic_step_count"] = int(np.count_nonzero(arrays["plastic_increment"] > 1.0e-12))
627
+ return arrays, metrics
628
+
629
+
630
+ def _agentfem_commit() -> str:
631
+ return subprocess.run(
632
+ ("git", "rev-parse", "HEAD"),
633
+ cwd=AGENTFEM_ROOT,
634
+ check=True,
635
+ capture_output=True,
636
+ text=True,
637
+ ).stdout.strip()
638
+
639
+
640
+ def _record(row: dict[str, object], metrics: dict[str, float | bool]) -> dict[str, object]:
641
+ return {
642
+ "sample_id": str(row["case_id"]),
643
+ "cohort": str(row["cohort"]),
644
+ "split": str(row["split"]),
645
+ "group_id": str(row["group_id"]),
646
+ "path_family": str(row["path_family"]),
647
+ "points": int(row["points"]),
648
+ "cycle_count": int(row["cycle_count"]),
649
+ "maximum_equivalent_strain": float(row["maximum_equivalent_strain"]),
650
+ "all_finite": bool(metrics["all_finite"]),
651
+ "plastic_step_count": int(metrics["plastic_step_count"]),
652
+ "maximum_absolute_stress_pa": float(metrics["maximum_absolute_stress_pa"]),
653
+ "maximum_peeq": float(metrics["maximum_peeq"]),
654
+ "maximum_yield_surface_relative_residual": float(metrics["maximum_yield_surface_relative_residual"]),
655
+ "minimum_peeq_increment": float(metrics["minimum_peeq_increment"]),
656
+ "maximum_plastic_strain_trace": float(metrics["maximum_plastic_strain_trace"]),
657
+ "observation_protocol": str(row["observation_protocol"]),
658
+ }
659
+
660
+
661
+ def generate(*, force: bool = False, limit: int | None = None) -> dict[str, object]:
662
+ rows = design()
663
+ if limit is not None:
664
+ rows = rows[: int(limit)]
665
+ DATA_DIR.mkdir(parents=True, exist_ok=True)
666
+ ARTIFACT_DIR.mkdir(parents=True, exist_ok=True)
667
+ if DATA_PATH.exists() and not force:
668
+ raise FileExistsError(f"{DATA_PATH} exists; pass --force to replace it.")
669
+ need_structures = any(row["cohort"] == "structure_derived" for row in rows)
670
+ bases = build_structure_bases(force=force) if need_structures else {}
671
+ temporary = DATA_PATH.with_suffix(".h5.tmp")
672
+ records: list[dict[str, object]] = []
673
+ started = time.perf_counter()
674
+ with h5py.File(temporary, "w") as h5:
675
+ h5.attrs["schema"] = "agentfem.physics-data.denim-capability-extension"
676
+ h5.attrs["schema_version"] = "4.0.0"
677
+ h5.attrs["material_json"] = json.dumps(MATERIAL, sort_keys=True)
678
+ h5.attrs["scope"] = str(load_config()["scope"])
679
+ for index, row in enumerate(rows):
680
+ arrays, metrics = solve_row(row, bases)
681
+ if not bool(metrics["all_finite"]):
682
+ raise RuntimeError(f"Non-finite trajectory at index {index}.")
683
+ if float(metrics["minimum_peeq_increment"]) < -1.0e-12:
684
+ raise RuntimeError(f"PEEQ decreased at index {index}.")
685
+ if float(metrics["maximum_yield_surface_relative_residual"]) > 1.0e-8:
686
+ raise RuntimeError(f"Yield residual failed at index {index}.")
687
+ group = h5.create_group(f"{index:05d}")
688
+ for key in (
689
+ "case_id",
690
+ "cohort",
691
+ "split",
692
+ "group_id",
693
+ "path_family",
694
+ "observation_protocol",
695
+ ):
696
+ group.attrs[key] = str(row[key])
697
+ group.attrs["points"] = int(row["points"])
698
+ group.attrs["cycle_count"] = int(row["cycle_count"])
699
+ group.attrs["parameters_json"] = json.dumps(row, sort_keys=True)
700
+ group.attrs["quality_json"] = json.dumps(metrics, sort_keys=True)
701
+ for name, value in arrays.items():
702
+ group.create_dataset(name, data=value, compression="gzip", shuffle=True)
703
+ records.append(_record(row, metrics))
704
+ if (index + 1) % 50 == 0 or index + 1 == len(rows):
705
+ print(f"generated {index + 1}/{len(rows)}", flush=True)
706
+ os.replace(temporary, DATA_PATH)
707
+ INDEX_PATH.write_text(
708
+ "".join(json.dumps(record, sort_keys=True) + "\n" for record in records),
709
+ encoding="utf-8",
710
+ )
711
+ with INDEX_CSV_PATH.open("w", newline="", encoding="utf-8") as handle:
712
+ writer = csv.DictWriter(handle, fieldnames=list(records[0]))
713
+ writer.writeheader()
714
+ writer.writerows(records)
715
+ manifest: dict[str, object] = {
716
+ "schema": "agentfem.physics-data.denim-capability-extension",
717
+ "schema_version": "4.0.0",
718
+ "sample_count": len(records),
719
+ "complete_release": len(records) == 1000,
720
+ "cohort_counts": dict(sorted(Counter(record["cohort"] for record in records).items())),
721
+ "split_counts": dict(sorted(Counter(record["split"] for record in records).items())),
722
+ "path_family_counts": dict(sorted(Counter(record["path_family"] for record in records).items())),
723
+ "point_count_distribution": dict(sorted(Counter(str(record["points"]) for record in records).items())),
724
+ "group_count": len({record["group_id"] for record in records}),
725
+ "data_sha256": _sha256(DATA_PATH),
726
+ "index_jsonl_sha256": _sha256(INDEX_PATH),
727
+ "index_csv_sha256": _sha256(INDEX_CSV_PATH),
728
+ "structure_bases_sha256": _sha256(STRUCTURE_BASIS_PATH) if STRUCTURE_BASIS_PATH.exists() else None,
729
+ "data_bytes": DATA_PATH.stat().st_size,
730
+ "generation_seconds": time.perf_counter() - started,
731
+ "agentfem_commit": _agentfem_commit(),
732
+ "reference_material": "hidden three-memory Chaboche with tabulated isotropic hardening",
733
+ "quality": {
734
+ "all_finite_failures": sum(not bool(record["all_finite"]) for record in records),
735
+ "maximum_yield_surface_relative_residual": max(float(record["maximum_yield_surface_relative_residual"]) for record in records),
736
+ "minimum_peeq_increment": min(float(record["minimum_peeq_increment"]) for record in records),
737
+ "maximum_plastic_strain_trace": max(float(record["maximum_plastic_strain_trace"]) for record in records),
738
+ "minimum_plastic_step_count": min(int(record["plastic_step_count"]) for record in records),
739
+ },
740
+ "structure_fidelity": "AgentFEM linear-elastic unit-load strain bases with one-way nonlinear material replay; no coupled elastoplastic redistribution claim",
741
+ "counting_rule": "One sample is one complete trajectory. Observation noise/masks are fields, not extra samples. Matched resolutions are explicitly grouped.",
742
+ }
743
+ _write_json(MANIFEST_PATH, manifest)
744
+ _write_json(ARTIFACT_DIR / "quality.json", manifest)
745
+ return manifest
746
+
747
+
748
+ def audit() -> dict[str, object]:
749
+ manifest = json.loads(MANIFEST_PATH.read_text(encoding="utf-8"))
750
+ rows = [json.loads(line) for line in INDEX_PATH.read_text(encoding="utf-8").splitlines() if line]
751
+ with h5py.File(DATA_PATH, "r") as h5:
752
+ groups = list(h5.keys())
753
+ finite_failures = 0
754
+ missing = []
755
+ for group_name in groups:
756
+ group = h5[group_name]
757
+ required = (
758
+ "strain",
759
+ "stress_pa",
760
+ "plastic_strain",
761
+ "peeq",
762
+ "plastic_increment",
763
+ "memories_pa",
764
+ "truth_memories_pa",
765
+ "isotropic_radius_pa",
766
+ "time_coordinate",
767
+ )
768
+ for name in required:
769
+ if name not in group:
770
+ missing.append(f"{group_name}:{name}")
771
+ elif not np.isfinite(group[name][...]).all():
772
+ finite_failures += 1
773
+ if group.attrs["cohort"] == "discretization_and_observation":
774
+ for name in ("observed_strain", "observed_stress_pa", "observation_mask"):
775
+ if name not in group:
776
+ missing.append(f"{group_name}:{name}")
777
+ if group.attrs["cohort"] == "structure_derived":
778
+ for name in ("source_strain_basis", "load_mode_coefficients", "source_coordinate"):
779
+ if name not in group:
780
+ missing.append(f"{group_name}:{name}")
781
+ audit_result = {
782
+ "sample_count": len(rows),
783
+ "hdf5_group_count": len(groups),
784
+ "case_id_unique": len({row["sample_id"] for row in rows}) == len(rows),
785
+ "missing_required_fields": missing,
786
+ "nonfinite_required_field_count": finite_failures,
787
+ "data_sha256_matches_manifest": _sha256(DATA_PATH) == manifest["data_sha256"],
788
+ "grouped_resolution_protocol": all(
789
+ len([row for row in rows if row["group_id"] == group_id]) == 4
790
+ for group_id in {row["group_id"] for row in rows if row["cohort"] == "discretization_and_observation"}
791
+ ),
792
+ "structure_group_count": len({row["group_id"] for row in rows if row["cohort"] == "structure_derived"}),
793
+ }
794
+ audit_result["passed"] = bool(
795
+ audit_result["sample_count"] == 1000
796
+ and audit_result["hdf5_group_count"] == 1000
797
+ and audit_result["case_id_unique"]
798
+ and not audit_result["missing_required_fields"]
799
+ and audit_result["nonfinite_required_field_count"] == 0
800
+ and audit_result["data_sha256_matches_manifest"]
801
+ and audit_result["grouped_resolution_protocol"]
802
+ and audit_result["structure_group_count"] == 4
803
+ )
804
+ _write_json(ARTIFACT_DIR / "audit.json", audit_result)
805
+ return audit_result
806
+
807
+
808
+ def main() -> None:
809
+ parser = argparse.ArgumentParser()
810
+ parser.add_argument("--force", action="store_true")
811
+ parser.add_argument("--limit", type=int)
812
+ parser.add_argument("--audit-only", action="store_true")
813
+ args = parser.parse_args()
814
+ if args.audit_only:
815
+ report = audit()
816
+ else:
817
+ report = generate(force=args.force, limit=args.limit)
818
+ if args.limit is None:
819
+ report = {"generation": report, "audit": audit()}
820
+ print(json.dumps(report, indent=2, sort_keys=True))
821
+
822
+
823
+ if __name__ == "__main__":
824
+ main()
tests/test_t2_denim_capability_v4.py ADDED
@@ -0,0 +1,78 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ from collections import Counter, defaultdict
4
+
5
+ import numpy as np
6
+
7
+ from src.generate_t2_denim_capability_v4 import (
8
+ FULL_3D_FAMILIES,
9
+ RESOLUTIONS,
10
+ design,
11
+ solve_row,
12
+ )
13
+
14
+
15
+ def test_v4_design_counts_and_unique_ids():
16
+ rows = design()
17
+ assert len(rows) == 1000
18
+ assert len({row["case_id"] for row in rows}) == 1000
19
+ assert Counter(row["cohort"] for row in rows) == {
20
+ "long_cycle": 300,
21
+ "full_3d_nonproportional": 300,
22
+ "structure_derived": 200,
23
+ "discretization_and_observation": 200,
24
+ }
25
+ assert Counter(row["path_family"] for row in rows if row["cohort"] == "full_3d_nonproportional") == {
26
+ family: 50 for family in FULL_3D_FAMILIES
27
+ }
28
+
29
+
30
+ def test_v4_resolution_groups_are_complete_and_isolated():
31
+ rows = [row for row in design() if row["cohort"] == "discretization_and_observation"]
32
+ grouped = defaultdict(list)
33
+ for row in rows:
34
+ grouped[row["group_id"]].append(row)
35
+ assert len(grouped) == 50
36
+ for values in grouped.values():
37
+ assert tuple(sorted(row["points"] for row in values)) == RESOLUTIONS
38
+ assert len({row["split"] for row in values}) == 1
39
+ assert len({row["path_seed"] for row in values}) == 1
40
+ assert len({row["maximum_equivalent_strain"] for row in values}) == 1
41
+
42
+
43
+ def test_v4_long_cycle_split_is_true_horizon_ood():
44
+ rows = [row for row in design() if row["cohort"] == "long_cycle"]
45
+ assert {row["cycle_count"] for row in rows if row["split"] == "train_long_cycle"} == {10, 25}
46
+ assert {row["cycle_count"] for row in rows if row["split"] == "validation_long_cycle"} == {50}
47
+ assert {row["cycle_count"] for row in rows if row["split"] == "test_long_cycle_ood"} == {100}
48
+
49
+
50
+ def test_v4_material_point_smoke_without_structure_solver():
51
+ rows = design()
52
+ selected = (
53
+ next(row for row in rows if row["cohort"] == "long_cycle"),
54
+ next(row for row in rows if row["cohort"] == "full_3d_nonproportional"),
55
+ next(row for row in rows if row["cohort"] == "discretization_and_observation"),
56
+ )
57
+ for row in selected:
58
+ arrays, metrics = solve_row(row, {})
59
+ assert metrics["all_finite"]
60
+ assert metrics["minimum_peeq_increment"] >= -1.0e-12
61
+ assert metrics["maximum_yield_surface_relative_residual"] < 1.0e-8
62
+ assert arrays["strain"].shape == (row["points"], 6)
63
+ assert arrays["stress_pa"].shape == (row["points"], 6)
64
+ observed, _ = solve_row(selected[-1], {})
65
+ assert observed["observation_mask"].dtype == np.uint8
66
+ assert observed["observation_mask"][0] == 1
67
+ assert observed["observation_mask"][-1] == 1
68
+
69
+
70
+ def test_every_full_3d_family_is_symmetric_and_integrable():
71
+ rows = [row for row in design() if row["cohort"] == "full_3d_nonproportional"]
72
+ for family in FULL_3D_FAMILIES:
73
+ row = next(value for value in rows if value["path_family"] == family)
74
+ arrays, metrics = solve_row(row, {})
75
+ strain = arrays["strain"]
76
+ assert np.isfinite(strain).all()
77
+ assert metrics["all_finite"]
78
+ assert metrics["maximum_yield_surface_relative_residual"] < 1.0e-8