Drop the SFT test split and the split counts from the card
Browse files- README.md +19 -22
- sft/mix/test-00000-of-00001.parquet +0 -3
README.md
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@@ -123,8 +123,6 @@ configs:
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data_files:
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- split: train
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path: sft/mix/train-*.parquet
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- split: test
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path: sft/mix/test-*.parquet
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- config_name: sft_biology_qa
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data_files:
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- split: train
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FineDNA is the training data of [Carbon-X](https://huggingface.co/HuggingFaceBio/Carbon-X), the model that taught
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Qwen3-14B to read DNA, for all three of its training stages. Each stage is a group of configs:
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| stage | configs |
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|---|---|---:|---|
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| [Mid-training](#mid-training) | `mid_*`, one per source (23) | 514.30B tokens, of which the run read 302B | `Qwen/Qwen3-14B` |
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| [SFT](#sft) | `sft_mix`, and `sft_*` for each of its 8 domains | 203,923
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| [RL](#rl) | `rl_mix` | 98,433
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`sft_mix` and `rl_mix` are the rows the SFT and GRPO trainers used, in the order they used them. Mid-training has no
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single mix: Megatron samples the `mid_*` configs with the weights in [the mix](#the-mix) below.
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# one mid-training source; the mid-training configs total about 950 GB, so stream them
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ds = load_dataset("HuggingFaceBio/FineDNA", "mid_dna_mrna", split="train", streaming=True)
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# the SFT mixture, or one of its domains
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ds = load_dataset("HuggingFaceBio/FineDNA", "sft_mix")
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ds = load_dataset("HuggingFaceBio/FineDNA", "sft_chat", split="train")
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# the RL blend
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ds = load_dataset("HuggingFaceBio/FineDNA", "rl_mix", split="train")
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@@ -315,12 +313,11 @@ Biology configs also have a `validation` split: the documents held out of traini
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## SFT
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Supervised fine-tuning conversations for a DNA language model:
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reproduces the mixture without any further weighting.
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Each domain also has its own config, `sft_<domain>`, holding the `sft_mix`
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### Columns
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### Domains
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| config |
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| --- | ---: | ---
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| `sft_biology_qa` | 4,603 |
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| `sft_chat` | 8,553 |
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| `sft_dna_computation` | 44,925 |
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| `sft_instruction_following` | 5,904 |
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| `sft_sequence_analysis` | 7,561 |
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| `sft_sequence_classification` | 16,396 |
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| `sft_sequence_continuation` | 58,727 |
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| `sft_variant_effect_prediction` | 57,254 |
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## RL
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Verifiable prompts for reinforcement learning of a DNA language model: 98,433 rows
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80,406 distinct prompts. Every prompt has a gold answer or constraint set that a reward function checks in code. The
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blend was calibrated on rollouts from Carbon-X-SFT and excludes the prompts that model saw during SFT. It is meant for
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one epoch. The rows of `rl_mix` are in the order the GRPO trainer's mixture loader produces (seed 0), so training on it
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data_files:
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- split: train
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path: sft/mix/train-*.parquet
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- config_name: sft_biology_qa
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data_files:
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- split: train
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FineDNA is the training data of [Carbon-X](https://huggingface.co/HuggingFaceBio/Carbon-X), the model that taught
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Qwen3-14B to read DNA, for all three of its training stages. Each stage is a group of configs:
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| stage | configs | size | starts from |
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|---|---|---:|---|
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| [Mid-training](#mid-training) | `mid_*`, one per source (23) | 514.30B tokens, of which the run read 302B | `Qwen/Qwen3-14B` |
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| [SFT](#sft) | `sft_mix`, and `sft_*` for each of its 8 domains | 203,923 conversations | `HuggingFaceBio/Carbon-X-Base` |
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| [RL](#rl) | `rl_mix` | 98,433 prompts | `HuggingFaceBio/Carbon-X-SFT` |
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`sft_mix` and `rl_mix` are the rows the SFT and GRPO trainers used, in the order they used them. Mid-training has no
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single mix: Megatron samples the `mid_*` configs with the weights in [the mix](#the-mix) below.
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# one mid-training source; the mid-training configs total about 950 GB, so stream them
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ds = load_dataset("HuggingFaceBio/FineDNA", "mid_dna_mrna", split="train", streaming=True)
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# the SFT mixture, or one of its domains
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ds = load_dataset("HuggingFaceBio/FineDNA", "sft_mix", split="train")
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ds = load_dataset("HuggingFaceBio/FineDNA", "sft_chat", split="train")
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# the RL blend
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ds = load_dataset("HuggingFaceBio/FineDNA", "rl_mix", split="train")
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## SFT
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Supervised fine-tuning conversations for a DNA language model: 203,923 rows. `sft_mix` holds exactly the rows the
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SFT trainer built from the Carbon-X SFT mixture, so training on it reproduces the mixture without any further weighting.
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Each domain also has its own config, `sft_<domain>`, holding the `sft_mix` rows of that domain in the same order, e.g.
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`load_dataset("HuggingFaceBio/FineDNA", "sft_chat")`.
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### Columns
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### Domains
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| config | rows | what the rows teach |
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| --- | ---: | --- |
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| `sft_biology_qa` | 4,603 | genetics, molecular biology and bioinformatics questions from Biology StackExchange, Biostars, real user chats and Nemotron chat data |
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| `sft_chat` | 8,553 | multi-turn conversations on molecular-biology concepts, the assistant's identity, honesty about its limits, and pushing back on false claims |
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| `sft_dna_computation` | 44,925 | answers computed exactly from the sequence: counting, GC content, melting temperature, translation, restriction sites, base lookup, coordinates, edits, rewriting |
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| `sft_instruction_following` | 5,904 | answering in the format the user asks for, and following format constraints on biology prompts |
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| `sft_sequence_analysis` | 7,561 | free-text, mostly multi-turn discussion of a pasted sequence: primer checks, annotation, coding potential, troubleshooting |
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| `sft_sequence_classification` | 16,396 | multiple-choice functional genomics: promoter vs enhancer, species of origin, TF motifs, TF binding sites |
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| `sft_sequence_continuation` | 58,727 | predict the next 1–32 nucleotides after a 4–8 kb eukaryotic context |
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| `sft_variant_effect_prediction` | 57,254 | decide whether a single-nucleotide variant is benign or pathogenic from its sequence window, with templated reasoning |
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## RL
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Verifiable prompts for reinforcement learning of a DNA language model: 98,433 rows, covering
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80,406 distinct prompts. Every prompt has a gold answer or constraint set that a reward function checks in code. The
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blend was calibrated on rollouts from Carbon-X-SFT and excludes the prompts that model saw during SFT. It is meant for
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one epoch. The rows of `rl_mix` are in the order the GRPO trainer's mixture loader produces (seed 0), so training on it
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sft/mix/test-00000-of-00001.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:569236fee5d4db80429cccdee827cf1ce997fbeaad405bf644ad14fdf0a29a21
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size 587441
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