rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
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Method[] m = FunctionObject.findMethods(NativeWith.class, "With"); | Method[] m = FunctionObject.findMethods(NativeWith.class, "jsConstructor"); | public static void init(Scriptable scope) { NativeWith w = new NativeWith(); w.setPrototype(ScriptableObject.getObjectPrototype(scope)); Method[] m = FunctionObject.findMethods(NativeWith.class, "With"); FunctionObject f = new FunctionObject("With", m[0], scope); f.addAsConstructo... | 19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/d83c7dc5cf112a5ef927e29997c704a42423d705/NativeWith.java/clean/src/org/mozilla/javascript/NativeWith.java | [
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.setType(CheckStatus.errorType) | .setCause(this).setType(CheckStatus.errorType) | public CheckCLDR handleCheck(String path, String fullPath, String value, Map options, List result) { if (path.indexOf("/dates") < 0 || path.indexOf("gregorian") < 0) return this; try { if (path.indexOf("[@type=\"narrow\"]") >= 0) { int end = getFirstGraphemeClusterBoundary(value); if (end != value.length()) ... | 27800 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27800/27dd737aaa4119a515e7e17bde9e63081008c55d/CheckDates.java/buggy/tools/java/org/unicode/cldr/test/CheckDates.java | [
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if (id == null) | if (id == null) { | private final void readObjectContributions( final IConfigurationElement[] configurationElements, final int configurationElementCount) { final List warningsToLog = new ArrayList(1); for (int i = 0; i < configurationElementCount; i++) { final IConfigurationElement element = configurationElements[i]; // Read th... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/fa4a8cff0e027f8d3c6b1fcb92b30f46767dd191/LegacyActionHandlerPersistence.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/handlers/LegacyActionHandlerPersistence.java | [
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dataEngine.defineDataSource( adaptor.createDataSourceDesign( dataSource)); | dataEngine.defineDataSource( adaptor .createDataSourceDesign( dataSource ) ); | public void prepare( Report report, Map appContext ) { ReportDesignHandle rptHandle = report.getReportDesign( ); ModelDteApiAdapter adaptor = new ModelDteApiAdapter( context.getReportContext(), context.getSharedScope() ); // Handling data sources List dataSourceList = rptHandle.getAllDataSources( ); for ... | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/c0422a1db84842d1e332663c3d4c7e2a8109aca8/AbstractDataEngine.java/clean/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/data/dte/AbstractDataEngine.java | [
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return new Double(o0.doubleValue() * o1.doubleValue()); | return new Double(o0.doubleValue() + o1.doubleValue()); | public Object evaluate(Evaluator evaluator, Exp[] args) { Double o0 = getDoubleArg(evaluator, args, 0), o1 = getDoubleArg(evaluator, args, 1); return new Double(o0.doubleValue() * o1.doubleValue()); } | 51263 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51263/be5cbf35035318846261fc9706b0dadd4c54e1a5/BuiltinFunTable.java/buggy/src/main/mondrian/olap/fun/BuiltinFunTable.java | [
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end = i - 1; break; | if(buffer._isLineVisible(i,index) && buffer.getFoldLevel(i) <= initialFoldLevel) { end = i - 1; break; } | public void expandFold(int line, boolean fully) { int initialFoldLevel = buffer.getFoldLevel(line); int lineCount = buffer.getLineCount(); int start = 0; int end = lineCount - 1; //{{{ Find fold start and fold end... if(line != lineCount - 1 && buffer._isLineVisible(line,index) && !buffer._isLineVisible(line... | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/ba1ec3297d11f3a466feef112603ac39ffe7a66f/FoldVisibilityManager.java/buggy/org/gjt/sp/jedit/textarea/FoldVisibilityManager.java | [
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protected final VM_Address matureCopy(boolean isScalar, int bytes) | protected final VM_Address matureCopy(int bytes, int align, int offset) | protected final VM_Address matureCopy(boolean isScalar, int bytes) throws VM_PragmaInline { return mature.alloc(isScalar, bytes, matureSpace.inMSCollection()); } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/e5a4d3dd8a79077cd7f4dad18813204330cc76dc/Plan.java/buggy/rvm/src/vm/memoryManagers/JMTk/plan/genMS/Plan.java | [
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private int sqlInsertIntoMeta(DocumentDomainObject document) { | private int sqlInsertIntoMeta( DocumentDomainObject document ) { | private int sqlInsertIntoMeta(DocumentDomainObject document) { String[] metaColumnNames = { "doc_type", "meta_headline", "meta_text", "meta_image", "owner_id", "permissions", "shared", "show_meta", "lang_prefix", "date_created", "date_modified", "disable_search", "... | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/f203f6fc91c9ae8d2fcd69e28ea9f0981a4ee690/DocumentMapper.java/buggy/server/src/imcode/server/document/DocumentMapper.java | [
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buffer.append("----- End of stacktrace -----\n"); | while (buffer.charAt(buffer.length() - 1) == '\n') { buffer.deleteCharAt(buffer.length() - 1); } buffer.append("\n----- End of stacktrace -----\n"); | private void copyDetailsToClipBoard() { StringBuffer buffer = new StringBuffer(mErrorMessageTA.getText()); buffer.append("\n\n----- Start of stacktrace -----\n"); Throwable thr = mThrowable; while (thr != null) { if (thr != mThrowable) { buffer.append("\n\nCaused by:\n"); ... | 9266 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9266/48b99a8e774afc120513cb8884fa3e075f3e734d/ErrorHandler.java/buggy/tvbrowser/src/util/exc/ErrorHandler.java | [
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public BigInteger and(BigInteger y) | private static BigInteger and(BigInteger x, int y) | public BigInteger and(BigInteger y) { if (y.words == null) return and(this, y.ival); else if (words == null) return and(y, ival); BigInteger x = this; if (ival < y.ival) { BigInteger temp = this; x = y; y = temp; } int i; int len = y.isNegative() ? x.ival : y.ival; i... | 1023 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1023/4e141f35458b612b492f1f4dd6fb28d4924e7828/BigInteger.java/clean/libjava/java/math/BigInteger.java | [
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catch (Exception e) { Logger.log (Logger.ERROR, e); } return null; | String o1 = Util.substitute(matcher, p1, t1, sHTML, Util.SUBSTITUTE_ALL, Util.INTERPOLATE_ALL); String o2 = Util.substitute(matcher, p2, t2, o1, Util.SUBSTITUTE_ALL, Util.INTERPOLATE_ALL); return o2; | protected String replaceRelativeImages (String sHTML) { try { int iStartAt = 0; while (iStartAt >= 0) { int iSrcAt; int iNextSRC = sHTML.indexOf ("SRC", iStartAt); int iNextSrc = sHTML.indexOf ("src", iStartAt); if (iNextSRC < 0 && iNextSrc ... | 1895 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1895/1f323471c8077e29c270b3497905818c0a63cd25/CPageRenderer.java/buggy/source/org/jasig/portal/channels/CPageRenderer.java | [
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assertTrue("Wrong pattern", f2.toPattern().equals("'yyyy' MM yy")); | assertEquals("Wrong pattern", "'yyyy' MM yy", f2.toPattern()); | public void test_ConstructorLjava_lang_StringLjava_util_Locale() { // Test for method java.text.SimpleDateFormat(java.lang.String, // java.util.Locale) SimpleDateFormat f2 = new SimpleDateFormat("'yyyy' MM yy", Locale.GERMAN); assertTrue("Wrong class", f2.getClass() == SimpleDateFormat.class); assertTrue("Wron... | 54769 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54769/aa7f5ac38085143bcf2542c95a675411434e9ae6/SimpleDateFormatTest.java/buggy/modules/text/src/test/java/org/apache/harmony/text/tests/java/text/SimpleDateFormatTest.java | [
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if (oper instanceof SIRFilter && node.inputs > 0 && node.incoming[0] != null) { | if (oper instanceof SIRFilter && node.inputs > 0 && node.incoming[0] != null && CommonUtils.getOutputType(node.incoming[0]) != CStdType.Void) { | public Vector<String> generateRunFunction(String init_f, String main_f, List<String> cleanupCode) { Vector<String> r = new Vector<String>(); r.add("\n"); // +=============================+ // | Init State | // +=========... | 47772 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47772/9a8194eab858e42d60961335b81ff4d4876d825b/ClusterCodeGenerator.java/buggy/streams/src/at/dms/kjc/cluster/ClusterCodeGenerator.java | [
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public static InputStream getResourceAsStream(AuthToken auth, ItemId iid, Map<String,String> params) throws ServiceException { Provisioning prov = Provisioning.getInstance(); Server server = prov.getServer(prov.get(AccountBy.id, iid.getAccountId())); int port = server.getIntAttr(Provisioning.A_zimbraMailPort, 0); bool... | public static InputStream getResourceAsStream(AuthToken auth, ItemId iid, Map<String, String> params) throws ServiceException { Account target = Provisioning.getInstance().get(AccountBy.id, iid.getAccountId()); Map<String, String> pcopy = new HashMap<String, String>(params); pcopy.put(QP_ID, iid.toString()); return get... | public static InputStream getResourceAsStream(AuthToken auth, ItemId iid, Map<String,String> params) throws ServiceException { // fetch from remote store Provisioning prov = Provisioning.getInstance(); Server server = prov.getServer(prov.get(AccountBy.id, iid.getAccountId())); in... | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/a5bb3f7050fac9e5ef0eef75681d51f84068110e/UserServlet.java/buggy/ZimbraServer/src/java/com/zimbra/cs/service/UserServlet.java | [
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WorkflowItem [] wfarray = WorkflowItem.findByCollection(ourContext, this); for( int x = 0; x < wfarray.length; x++ ) { Item myItem = wfarray[x].getItem(); wfarray[x].deleteWrapper(); myItem.delete(); } WorkspaceItem [] wsarray = WorkspaceItem.findByCollection(ourContext, this); for( int x = 0; x < wsarray.length; x... | void delete() throws SQLException, AuthorizeException, IOException { log.info(LogManager.getHeader(ourContext, "delete_collection", "collection_id=" + getID())); // remove from index DSIndexer.unIndexContent(ourContext, this); // Remove from cache o... | 31338 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31338/40fc45c19a40b1806eeb97f5d687ce19ab6d1869/Collection.java/buggy/dspace/src/org/dspace/content/Collection.java | [
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try { out.write(b, off, len); } catch (InterruptedIOException _) { Thread.currentThread().interrupt(); } catch (IOException _) { error = true; } if (autoFlush) { flush(); } } | try { out.write (oneByte & 0xff); if (auto_flush && (oneByte == '\n')) flush (); } catch (IOException e) { setError (); } } | public void write(byte b[], int off, int len) { if (off < 0 || len < 0 || off + len > b.length) { throw new IndexOutOfBoundsException(); } try { out.write(b, off, len); } catch (InterruptedIOException _) { Thread.currentThread().interrupt(); } catch (IOException _) { error = true; } if (autoFlush) { flush(); }} | 45713 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45713/8d1b3a953b2133b69c8ed157a2032d4d0b99db74/PrintStream.java/buggy/libraries/javalib/java/io/PrintStream.java | [
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int i = 0; for (; i < valueLen && iter.hasNext(); i++) { | for (int i = 0; i < valueLen && iter.hasNext(); i++) { | public void visitMultipleAsgnNode(MultipleAsgnNode iVisited) { // Make sure value is an array. if (value == null) { value = RubyArray.newArray(ruby, 0); } else if (!(value instanceof RubyArray)) { RubyObject newValue = value.convertToType("Array", "to_ary", false); ... | 49687 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49687/06e8c0888351efa411cfdddbdf48771ce7f584c0/AssignmentVisitor.java/buggy/org/jruby/evaluator/AssignmentVisitor.java | [
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rawTag = rawTag.trim (); int kind = -1; for (int i=0; i<tags.length; i++) { if (rawTag.startsWith (tags[i][0])) { kind = i; break; } } | int kind = getTagNumber (rawTag); | public static DocTag parse (String rawTag) throws DocException { rawTag = rawTag.trim (); int kind = -1; for (int i=0; i<tags.length; i++) { if (rawTag.startsWith (tags[i][0])) { kind = i; break; } } if (kind == -1) throw new DocException ("unsupported tag type: " + rawTag); String content = rawTag.s... | 46029 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46029/424b2f802111db6a2d82d0e2cdc8243caab9e324/DocTag.java/buggy/src/helma/doc/DocTag.java | [
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refType = methods[i].invoke(refHeader, null); | refType = methods[i].invoke(refHeader, (Object[]) null); | private void testGetMethods(Header refHeader, Header headerToTest) throws IllegalAccessException, InvocationTargetException { try { Class implementationClass; String name = refHeader.getName(); implementationClass = refHeader.getClass(); Class[] implementedInterfaces = implementationClass.getInterfaces(); ... | 3364 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3364/68c0ca844a7d5fe4a7744cbf9898184966ce0680/HeaderFactoryTest.java/buggy/src/test/tck/factory/HeaderFactoryTest.java | [
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splitter.getIOField ("streamInput", 0).setChannelSize (schedule.getBufferSizeBetween (body, splitter).intValue ()); | splitter.getIOField ("input", 0).setChannelSize (schedule.getBufferSizeBetween (body, splitter).intValue ()); | void setupBufferLengths (Schedule schedule) { // some of these asserts are restrictions on functionality // of this function and not on what a correct streamit structure would // be ASSERT (body != null); ASSERT (loop != null); ASSERT (joiner != null); ASSERT (spl... | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/b12d5aa3454be1beef21c8ab61c3fe13e6841d03/FeedbackLoop.java/clean/streams/src/streamit/library/FeedbackLoop.java | [
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buttons.add(Box.createHorizontalStrut(5)); | buttons.add(Box.createHorizontalStrut(2)); | public SearchBar(View view) { this.view = view; setFloatable(false); setLayout(new BorderLayout()); add(new JLabel(jEdit.getProperty("view.search.find")), BorderLayout.WEST); Box box = new Box(BoxLayout.Y_AXIS); box.add(Box.createGlue()); box.add(find = new HistoryTextField("find")); Dimension min = find.get... | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/a93dd37609b64b525a261ada694c678713fb5ecb/SearchBar.java/buggy/org/gjt/sp/jedit/gui/SearchBar.java | [
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protected void setColValue(int colIndex, Object value, int length) | protected void setColValue(int colIndex, int jdbcType, Object value, int length) | protected void setColValue(int colIndex, Object value, int length) throws SQLException { checkUpdateable(); } | 5753 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5753/280391932d64190b4ee42f49e5f8b60382f2fa03/JtdsResultSet.java/buggy/src/main/net/sourceforge/jtds/jdbc/JtdsResultSet.java | [
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return; | return false; | public void submit(final String[] rCommands) throws CoreException { final SubmitType type; if (rCommands.length == 0) type = SubmitType.DONOTHING; else if (rCommands.length == 1) type = SubmitType.SUBMITINPUT; else { if (!copyToClipboard(rCommands)) return; type = SubmitType.PASTECLIPBOARD; } doRunC... | 48482 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48482/d83823f01254ee41f13ac0d4757d43056fcc9f0b/RGWLauncher.java/buggy/de.walware.statet.r.launching.winrgui/src/de/walware/statet/r/launching/winrgui/RGWLauncher.java | [
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String afterValue = "<br>"; | String afterValue = "<br/>"; | public String getToken(String tokenSource, PlayerCharacter pc, ExportHandler eh) { StringTokenizer tok = new StringTokenizer(tokenSource, "."); tok.nextToken(); StringBuffer sb = new StringBuffer(); String name = tok.nextToken(); List noteList = getNoteList(pc, name); String beforeHeader = "<b>"; String afterHe... | 48301 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48301/f7e7c7687ef6c8ecbb1d277e97ff456a601eb147/NoteToken.java/buggy/code/src/java/plugin/exporttokens/NoteToken.java | [
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for(int i = 0; i < elements.length; i++){ final PsiJavaCodeReferenceElement element = elements[i]; | for(final PsiJavaCodeReferenceElement element : elements){ | public void visitClass(PsiClass aClass){ final PsiManager manager = aClass.getManager(); final LanguageLevel languageLevel = manager.getEffectiveLanguageLevel(); if(languageLevel.equals(LanguageLevel.JDK_1_3) || languageLevel.equals(Langu... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/2d46d291193579a7564649b4881c7ea8e02eda5b/ExtendsAnnotationInspection.java/buggy/plugins/InspectionGadgets/src/com/siyeh/ig/classlayout/ExtendsAnnotationInspection.java | [
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if (categories[i].getParentId() == null) list.add(categories[i]); | if (categories[i].getParentId() == null) { Set bindings = themeRegistry.getPresentationsBindingsFor(categories[i]); if (bindings == null || bindings.contains(workbench.getPresentationId())) list.add(categories[i]); } | public Object[] getElements(Object inputElement) { ArrayList list = new ArrayList(); Object [] uncatChildren = getCategoryChildren(null); list.addAll(Arrays.asList(uncatChildren)); ThemeElementCategory [] categories = ((IThemeRegistry)inputElement).getCategories(); ... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/3412409e3704808dfa733425bd517a44fc3f3daa/ColorsAndFontsPreferencePage.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/themes/ColorsAndFontsPreferencePage.java | [
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final Method method = VirtualMachineManager.class.getMethod("createVirtualMachine", new Class[]{myDelegateClass}); | final Method method = virtualMachineManager.getClass().getMethod("createVirtualMachine", new Class[]{myDelegateClass}); | public VirtualMachine createVirtualMachine() throws IOException { try { final VirtualMachineManager virtualMachineManager = Bootstrap.virtualMachineManager(); final Method method = VirtualMachineManager.class.getMethod("createVirtualMachine", new Class[]{myDelegateClass}); return (VirtualMachine)met... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/2d2d118407ce89dada9e31d09ba5b77c6598349a/ConnectionService.java/buggy/source/com/intellij/debugger/apiAdapters/ConnectionService.java | [
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jj_la1[57] = jj_gen; | jj_la1[59] = jj_gen; | final public void PrimitiveType() throws ParseException { /*@bgen(jjtree) PrimitiveType */ ASTPrimitiveType jjtn000 = new ASTPrimitiveType(this, JJTPRIMITIVETYPE); boolean jjtc000 = true; jjtree.openNodeScope(jjtn000); try { switch (jj_nt.kind) { case BOOLEAN: jj_consume_token(BOOLEAN); ... | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/3afd4630754ba5d6642f3e8a1c9aa5162eff7e9f/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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((RubyMap) arg).put( key, nf.newMethod(methodNode.getBodyNode(), methodNode.getNoex())); return RubyMapMethod.CONTINUE; } | ((RubyMap) arg).put( key, nf.newMethod(methodNode.getBodyNode(), methodNode.getNoex())); return RubyMapMethod.CONTINUE; } | public int execute(Object key, Object value, Object arg) { MethodNode methodNode = (MethodNode) value; ((RubyMap) arg).put( key, nf.newMethod(methodNode.getBodyNode(), methodNode.getNoex())); return RubyMapMethod.CONTINUE; } | 46454 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46454/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyModule.java/buggy/org/jruby/RubyModule.java | [
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if(!String.class.isInstance( propertyType ) || !propertyType.isArray()) { | if(!(String.class == propertyType) && !propertyType.isArray()) { | public void setLength(IntRange length) { if(!String.class.isInstance( propertyType ) || !propertyType.isArray()) { throw new MissingPropertyException("Length constraint can only be applied to a String or Array property",LENGTH_CONSTRAINT,owningClass); } Constraint c = (Constraint)this.appliedConstraints.get( L... | 51576 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51576/55faa39d8581467d7cd6a64d19a66f7faac40cc0/ConstrainedProperty.java/clean/src/commons/org/codehaus/groovy/grails/validation/ConstrainedProperty.java | [
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List auxPath = DijkstraShortestPath.findPathBetween(auxGraph1, auxVertex00, auxVertex11); | List auxPath = DijkstraShortestPath.findPathBetween(auxGraph, auxVertex00, auxVertex11); | public List equivalenceClasses() { int[] weight = weightVector(); Object[] cyclesArray = (Object[]) cycles.toArray(); Arrays.sort(cyclesArray, new Comparator() { public int compare(Object o1, Object o2) { return (int) (((Cycle)o1).weight() - ((Cycle)o2).weight()); } }); Collection essentialCycles = ess... | 46046 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46046/377171c5907bab11cc813de19845b0f9ae108f55/SimpleCycleBasis.java/buggy/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java | [
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jj_la1[78] = jj_gen; | jj_la1[80] = jj_gen; | final public void UnaryExpression() throws ParseException { /*@bgen(jjtree) #UnaryExpression( ( jjtn000 . getImage ( ) != null )) */ ASTUnaryExpression jjtn000 = new ASTUnaryExpression(this, JJTUNARYEXPRESSION); boolean jjtc000 = true; jjtree.openNodeScope(jjtn000); try { switch (jj_nt.kind) { case PL... | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/3afd4630754ba5d6642f3e8a1c9aa5162eff7e9f/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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TransportInDescription tranportIn = (TransportInDescription) tranportNames.next(); TransportListener listener = tranportIn.getReceiver(); if (listener != null && startedTranports.get(tranportIn.getName().getLocalPart()) == null) { listener.init(configctx, tranportIn); | TransportInDescription transportIn = (TransportInDescription) transportNames.next(); TransportListener listener = transportIn.getReceiver(); if (listener != null && startedTransports.get(transportIn.getName().getLocalPart()) == null) { listener.init(configctx, transportIn); | public synchronized void start() { Iterator tranportNames = configctx.getAxisConfiguration(). getTransportsIn().values().iterator(); while (tranportNames.hasNext()) { try { TransportInDescription tranportIn = (TransportInDescription) tranportNames.next(); ... | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/9bd137cf9a59fa520a67d44ffb3e52d13f2512c9/ListenerManager.java/buggy/modules/core/src/org/apache/axis2/engine/ListenerManager.java | [
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final LastCallStatus lastCallStatus = runtime.getLastCallStatus(); | final LastCallStatus lastCallStatus = getRuntime().getLastCallStatus(); | public final IRubyObject call(IRubyObject recv, String name, IRubyObject[] args, CallType callType) { if (args == null) { args = IRubyObject.NULL_ARRAY; } CacheEntry entry = getMethodBodyCached(name); final LastCallStatus lastCallStatus = runtime.getLastCallStatus(); if... | 48300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48300/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyModule.java/buggy/src/org/jruby/RubyModule.java | [
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this.id = id; this.mWebsite = website; this.mNewParent = parent; this.name = name; this.description = description; this.image = image; | public WeblogCategoryData( java.lang.String id, WebsiteData website, WeblogCategoryData parent, java.lang.String name, java.lang.String description, java.lang.String image) { this.id = id; this.mWebsite = website; this.mNewParent = parent; thi... | 46431 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46431/ed64ab3584f5a23c7d41a8c0956d7dabea7d1e1e/WeblogCategoryData.java/buggy/src/org/roller/pojos/WeblogCategoryData.java | [
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curCol[l] = Double.NEGATIVE_INFINITY; | curCol[l] = Double.NaN; | private void calcCell(Cell [][] cells) throws IllegalSymbolException, IllegalAlphabetException, IllegalTransitionException { Cell curCell = cells[0][0]; double[] curCol = curCell.scores; STATELOOP: for (int l = states.length - 1; l >= 0; --l) { //System.out.println("State = " +... | 50115 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50115/f34f99e864e9e8905fb53dcbad1bf1ae9678cc15/PairwiseDP.java/buggy/src/org/biojava/bio/dp/PairwiseDP.java | [
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queueProducer = producerSession.createProducer(queue); queueConsumer = consumerSession.createConsumer(queue); | public void setUp() throws Exception { super.setUp(); ServerManagement.startInVMServer(); ServerManagement.deployTopic("Topic"); ServerManagement.deployQueue("Queue"); InitialContext ic = new InitialContext(InVMInitialContextFactory.getJNDIEnvironment()); ConnectionFactory cf = (Conne... | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/7e0c3793e9d19c78611111b2867b96d8cfb6a0d3/MessageConsumerTest.java/clean/tests/src/org/jboss/test/messaging/jms/MessageConsumerTest.java | [
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int nrow = y.length; int ncol = x[0].length; if (nrow != x.length) { throw new QSARModelException("The number of values for the dependent variable does not match the number of rows of the design matrix"); } this.nvar = ncol; this.noutput = 1; Double[][] xx = new Double[nrow][ncol]; String[][] yy = new String[nrow][... | public CNNClassificationModel(double[][] x, String[] y, int size) throws QSARModelException { super(); this.params = new HashMap(); this.currentID = this.globalID; this.globalID++; this.setModelName("cdkCNNCModel"+this.currentID); int nrow = y.length; int ncol = x[0]... | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/60377c8e85f1a1fc4a663313d0fd20336f5f7c9e/CNNClassificationModel.java/clean/src/org/openscience/cdk/qsar/model/R/CNNClassificationModel.java | [
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data.widthHint = width; data.heightHint = height; | if(useHeightHint) data.heightHint = PREFERRED_HEIGHT; | protected void createTreeViewer(Composite parent, int width, int height) { Tree tree = new Tree(parent, SWT.CHECK | SWT.BORDER); GridData data = new GridData(GridData.FILL_BOTH); data.widthHint = width; data.heightHint = height; tree.setLayoutData(data); tree.setFont(parent.getFont()); treeViewer = new CheckboxTreeVie... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/f107019bb37e50ff7cbe8a61add7b656ad3cadde/ResourceTreeAndListGroup.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/dialogs/ResourceTreeAndListGroup.java | [
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coreAssetsElement.add(product.serialize()); | coreAssetElement.add(product.serialize()); } if (getRepositoryPath() != null) { Element repositoryPathElement = coreAssetElement.addElement ("repositoryPath"); repositoryPathElement.addText (getRepositoryPath()); | public void serialize(String path, int serializeLevel) { Document document = DocumentHelper.createDocument(); Element root = document.addElement("kobold-Productline"); //serialize all products and coreAssets //now all products Element productsElement = root.addElement("products"); //serialize each product f... | 9773 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9773/e73864794f65c900f84a30a100bd602233bd0c30/Productline.java/clean/kobold/src/kobold.common/src/kobold/common/data/plam/Productline.java | [
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_name.setLineWidth(0); _name.setMultiLine(true); _name.setFilled(false); Dimension nameMin = _name.getMinimumSize(); _name.setBounds(10, 10, 90, nameMin.height); | _name.setLineWidth(0); _name.setMultiLine(true); _name.setFilled(false); Dimension nameMin = _name.getMinimumSize(); _name.setBounds(10, 10, 90, nameMin.height); | public FigMessage() { _name.setLineWidth(0); _name.setMultiLine(true); _name.setFilled(false); Dimension nameMin = _name.getMinimumSize(); _name.setBounds(10, 10, 90, nameMin.height); _figPoly = new FigPoly(Color.black, Color.black); int[] xpoints = {75,75,77,75,73,75}; int[] ypoints = {33,24,... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/ca3bcb5d6dd283c4553bcbfe50b108dc5d499768/FigMessage.java/buggy/src_new/org/argouml/uml/diagram/ui/FigMessage.java | [
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event = new Event(); event.type = SWT.KeyDown; event.character = SWT.CR; display.post(event); event.type = SWT.KeyUp; display.post(event); | Runnable r = new Runnable() { public void run() { try { Thread.sleep(1000); } catch (InterruptedException e) { } char[] chars = String.valueOf(line).toCharArray(); Event event; for (int i = 0; i < chars.length; i++) { char c = chars[i]; event = new Event(); event.type = SWT.KeyDown; event.character = c; display.post(e... | protected void gotoLine(int line) { Event event = new Event(); event.type = SWT.KeyDown; event.keyCode = SWT.CTRL; display.post(event); event = new Event(); event.type = SWT.KeyDown; event.character = 'l'; display.post(event); event.type = SWT.KeyUp; display.post(event); event = new Event(); event.ty... | 13558 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13558/ac1388a8f65e23bdbc1519cfd83a011f14e51f91/VisualTestCase.java/clean/org.eclipse.ajdt.ui.tests/src/org/eclipse/ajdt/ui/tests/visual/VisualTestCase.java | [
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private boolean mungeNewConstructor( BcelClassWeaver weaver, NewConstructorTypeMunger newConstructorTypeMunger) { final LazyClassGen currentClass = weaver.getLazyClassGen(); final InstructionFactory fact = currentClass.getFactory(); ResolvedMember newConstructorMember = newConstructorTypeMunger.getSyntheticConst... | 7955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7955/7d7e9e2f23dcd0906909dcb8b8a5e40ee3e85d31/BcelTypeMunger.java/clean/org.aspectj/modules/weaver/src/org/aspectj/weaver/bcel/BcelTypeMunger.java | [
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final PsiExpression thenExpression = conditional.getThenExpression(); final PsiExpression elseExpression = conditional.getElseExpression(); | final PsiExpression thenExpression = conditional .getThenExpression(); final PsiExpression elseExpression = conditional .getElseExpression(); | private boolean expressionMustAssignVariable(PsiVariable field, PsiExpression expression, Set<MethodSignature> checkedMethods){ if(expression == null){ return false; } if(expression instan... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/fc3fc1341db4aa6d26930bf45116ec44c28fc569/InitializationReadUtils.java/clean/plugins/InspectionGadgets/src/com/siyeh/ig/psiutils/InitializationReadUtils.java | [
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public org.quickfix.field.InstrRegistry getInstrRegistry() throws FieldNotFound { org.quickfix.field.InstrRegistry value = new org.quickfix.field.InstrRegistry(); | public quickfix.field.InstrRegistry getInstrRegistry() throws FieldNotFound { quickfix.field.InstrRegistry value = new quickfix.field.InstrRegistry(); | public org.quickfix.field.InstrRegistry getInstrRegistry() throws FieldNotFound { org.quickfix.field.InstrRegistry value = new org.quickfix.field.InstrRegistry(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/Quote.java/clean/src/java/src/quickfix/fix44/Quote.java | [
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for (LambdaExp outer = parent; outer != declLambda; ) | for (LambdaExp outer = parent; outer != declLambda && outer != null; ) | public void capture(Declaration decl) { if (! (decl.getCanRead() || decl.getCanCall())) return; LambdaExp curLambda = getCurrentLambda (); LambdaExp declLambda = decl.getContext().currentLambda (); // If curLambda is inlined, the function that actually needs a closure // is its caller. We get it... | 41089 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41089/9f9877583001bd4238fa2f78b4e9beeaf5703be4/FindCapturedVars.java/buggy/gnu/expr/FindCapturedVars.java | [
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help.append("usage: env" + NEWLINE); help.append("Prints out the configuration environment." + NEWLINE); | help.append("usage: env" + Environment.NEWLINE); help.append("Prints out the configuration environment." + Environment.NEWLINE); | public String getHelp() { StringBuffer help = new StringBuffer(); help.append("usage: env" + NEWLINE); help.append("Prints out the configuration environment." + NEWLINE); return help.toString(); } | 3099 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3099/cf5f15c163270749fe5759b86b5e9984ae116faa/env.java/clean/src/com/marklogic/shell/env.java | [
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e.printStackTrace(); M_log.warn(".generatePDF(): " + e); | e.printStackTrace(); M_log.warn(this+".generatePDF(): " + e); | protected void generatePDF(Document doc, String xslFileName, OutputStream streamOut) { Driver driver = new Driver(); org.apache.avalon.framework.logger.Logger logger = new ConsoleLogger(ConsoleLogger.LEVEL_ERROR); MessageHandler.setScreenLogger(logger); driver.setLogger(logger); driver.setOutputStream(streamOut);... | 2021 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2021/56de4fae19b2983ad18c3cc50c86297f14f2b743/BaseCalendarService.java/clean/calendar/calendar-impl/impl/src/java/org/sakaiproject/calendar/impl/BaseCalendarService.java | [
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this.op = RSH; return SHOP; } } } else { if (matchChar('=')) { this.op = GE; return RELOP; } else { this.op = GT; return RELOP; } | this.op = LT; return RELOP; } } case '>': if (matchChar('>')) { if (matchChar('>')) { if (matchChar('=')) { this.op = URSH; return ASSIGN; } else { this.op = URSH; return SHOP; } } else { if (matchChar('=')) { this.op = RSH; return ASSIGN; } else { this.op = RSH; return SHOP; } } } else { if (matchChar('=')) { this.op... | public int getToken() throws IOException { int c; tokenno++; // Check for pushed-back token if (this.pushbackToken != EOF) { int result = this.pushbackToken; this.pushbackToken = EOF; return result; } // Eat whitespace, possibly sensitive to... | 13991 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13991/b1de655726ffc5e0dce2133a442d2908e9efa092/TokenStream.java/buggy/js/rhino/src/org/mozilla/javascript/TokenStream.java | [
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JMSDispatcher.instance.registerTarget(new Integer(sessionID), sessionAdvised); | Integer iSessionID = new Integer(sessionID); serverPeer.addSession(iSessionID, ep); JMSDispatcher.instance.registerTarget(iSessionID, sessionAdvised); | public SessionDelegate createSessionDelegate(boolean transacted, int acknowledgmentMode, boolean isXA) throws JMSException { try { log.debug("creating session " + (transacted ? "transacted" :"non tr... | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/67a2ce6eee4fecacdc05a35652ffceb168cc2c14/ServerConnectionEndpoint.java/buggy/src/main/org/jboss/jms/server/endpoint/ServerConnectionEndpoint.java | [
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synchronized (pool) { | void release() { if (pool != null) { synchronized (pool) { useCount++; Object key = HTTPConnection.getPoolKey(hostname, port, secure); pool.put(key, this); while (pool.size() >= HTTPURLConnection.maxConnections) { // maxC... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/8d798e21ea9e711563d557b9684e4c872138a713/HTTPConnection.java/clean/core/src/classpath/gnu/gnu/java/net/protocol/http/HTTPConnection.java | [
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if ( queryStack.get( i ) instanceof GroupDefinition ) return (GroupDefinition) queryStack.get( i ); | return (GroupDefinition) queryStack.getLast( ); | protected GroupDefinition getCurrentGroup( ) { if ( queryStack.isEmpty( ) ) return null; for ( int i = queryStack.size( ) - 1; i >= 0; i-- ) { if ( queryStack.get( i ) instanceof GroupDefinition ) return (GroupDefinition) queryStack.get( i ); } return null; } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/df952c9b3a0e802299432865054d0cf1d9b21bd4/ReportQueryBuilder.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/data/dte/ReportQueryBuilder.java | [
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c.childrenWriteAccept(this,false,false,false,false,true,false); | Geometry g = c.getGeometry(); if(g != null && g instanceof IndexedFaceSet && !checkHasTree((IndexedFaceSet) g)) c.childrenWriteAccept(this,false,false,false,false,true,false); else c.childrenAccept(this); | public void visit(SceneGraphComponent c) { if (!c.isVisible()) return; path.push(c); //c.childrenAccept(this); c.childrenWriteAccept(this,false,false,false,false,true,false); path.pop(); } | 25414 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25414/51e79571a7b7c86e1a1861dd690cf401c037471e/AABBPickSystem.java/clean/src-core/de/jreality/scene/pick/AABBPickSystem.java | [
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if (line == null) return false; | public synchronized boolean next(Writable key, Writable value) throws IOException { if (!(key instanceof Text)) { throw new IllegalArgumentException("Key should be of type Text but: " + key.getClass().getName()); } if (!(value instanceof Text)) { throw new IllegalArgumentException("Value s... | 50370 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50370/250ae5f8638bbd5f328aa6e0d1f9fc0a5fb133a9/StreamLineRecordReader.java/buggy/src/contrib/streaming/src/java/org/apache/hadoop/streaming/StreamLineRecordReader.java | [
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String url = getNormilizedUrl(fnOrScript); | String url = getNormalizedUrl(fnOrScript); | FunctionSource getFunctionSource(DebuggableScript fnOrScript) { FunctionSource fsource = functionSource(fnOrScript); if (fsource == null) { String url = getNormilizedUrl(fnOrScript); SourceInfo si = sourceInfo(url); if (si == null) { if (!fnOrScript.i... | 54155 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54155/2d4fc75b74d717c754829dde488ff0a7456682cc/Dim.java/clean/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/Dim.java | [
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context.enable(); | void enterInterruptImpl(Dim.StackFrame lastFrame, String threadTitle, String alertMessage) { statusBar.setText("Thread: " + threadTitle); showStopLine(lastFrame); if (alertMessage != null) { MessageDialogWrapper.showMessageDialog(this, ... | 12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/8a6fdf912e96cc292773139de3c88e93e60d1c56/DebugGui.java/clean/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/DebugGui.java | [
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if (stream == null || encoding == null) return; | protected void consumeBOM(InputStream stream, String encoding) throws IOException { if (stream == null || encoding == null) return; byte[] b = new byte[3]; int count = 0; stream.mark(3); encoding = encoding.toUpperCase(Locale.ENGLISH); if (encoding.equals(... | 6373 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6373/cb7e08116a75ae3e3c63a92d88ee196cec4b9377/XIncludeTextReader.java/buggy/src/org/apache/xerces/xinclude/XIncludeTextReader.java | [
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case TokenStream.GETBASE : name = strings[getShort(iCode, pc + 1)]; | } case TokenStream.GETBASE : { String name = strings[getShort(iCode, pc + 1)]; | public static Object interpret(Context cx, Scriptable scope, Scriptable thisObj, Object[] args, NativeFunction fnOrScript, InterpreterData theData) throws JavaScriptException { if (cx.interpreterSe... | 54155 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54155/052726b68e684efc593535d50a73767571084837/Interpreter.java/buggy/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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private Vector cloneList() | private ArrayList cloneList() | private Vector cloneList() { Vector clonedList = new Vector(); java.lang.reflect.Method cloneMethod; Object toClone; for ( int i = 0; i < elements.size(); ++i ) clonedList.add( attemptClone( get(i) ) ); return clonedList; } | 50364 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50364/cf3fd07f8690b1746f1405d553b05629acf8ca42/LockableListModel.java/buggy/src/net/java/dev/spellcast/utilities/LockableListModel.java | [
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public static IntraTraceBuffer getBuffer(InputTraceNode src, FilterTraceNode dst) | public static IntraTraceBuffer getBuffer(FilterTraceNode src, OutputTraceNode dst) | public static IntraTraceBuffer getBuffer(InputTraceNode src, FilterTraceNode dst) { if (!bufferStore.containsKey(src)) { bufferStore.put(src, new IntraTraceBuffer(src, dst)); } assert (((IntraTraceBuffer)bufferStore.get(src)).getDest() == dst) : "Src connected to different dst in buffer store"; return (Int... | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/89873b280b223280338b10758bfb6e6e0651c046/IntraTraceBuffer.java/buggy/streams/src/at/dms/kjc/spacetime/IntraTraceBuffer.java | [
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try { while (isActive) { LoggingEvent[] events = null; | public void run() { //Category cat = Category.getInstance(Dispatcher.class.getName()); LoggingEvent event; while(true) { synchronized(bf) { if(bf.length() == 0) { // Exit loop if interrupted but only if the the buffer is empty. if(interrupted) { //cat.info("Exiting."); break; } try { ... | 45952 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45952/a1a4571ce0ba03993fdeb66e293fc1d2c5c37ab6/AsyncAppender.java/clean/src/java/org/apache/log4j/AsyncAppender.java | [
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dialog.watchTicks(); return false; } | dialog.watchTicks(); return false; } | public static boolean safeToOpen(ProgressMonitorJobsDialog dialog, Shell excludedShell) { Shell modal = getModalShellExcluding(excludedShell); if (modal == null) { return true; } dialog.watchTicks(); return false; } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/7506e243e595688c711e578f314dd4c2eaaee9e1/ProgressManagerUtil.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/ProgressManagerUtil.java | [
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Iterator iter = getTopicItemByCurrentUser(topic); | Iterator iter = getTopicItemsByCurrentUser(topic); | public boolean isDeleteAny(DiscussionTopic topic, DiscussionForum forum) { if (LOG.isDebugEnabled()) { LOG.debug("isDeleteAny(DiscussionTopic " + topic + ", DiscussionForum" + forum + ")"); } if (checkBaseConditions(topic, forum)) { return true; } try { if (checkBaseCo... | 48936 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48936/aa024cfddb1213203aaa11130f98f439a9130e2e/UIPermissionsManagerImpl.java/clean/messageforums-component-shared/src/java/org/sakaiproject/component/app/messageforums/ui/UIPermissionsManagerImpl.java | [
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if (args.length == 1 && args[0].getType() == Category.Tuple) { return new ValueFunDef(new int[] {Category.Tuple}); } for (int i = 0; i < args.length; i++) { Exp arg = args[i]; if (!canConvert(arg, Category.Member, conversionCount)) { return null; } } int[] argTypes = new int[args.length]; for (int i = 0; i < argTypes.... | if (args.length == 1 && args[0].getType() == Category.Tuple) { return new ValueFunDef(new int[] {Category.Tuple}); } for (int i = 0; i < args.length; i++) { Exp arg = args[i]; if (!canConvert(arg, Category.Member, conversionCount)) { return null; } } int[] argTypes = new int[args.length]; for (int i = 0; i < argTypes.... | public FunDef resolve(Exp[] args, int[] conversionCount) { if (args.length == 1 && args[0].getType() == Category.Tuple) { return new ValueFunDef(new int[] {Category.Tuple}); } for (int i = 0; i < args.length; i++) { Exp arg = args[i]; if (!canConvert(arg, Category.Member, conversionCount))... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/b5b5168edc3af09cb74945a80b0c36e6630ed502/BuiltinFunTable.java/buggy/src/main/mondrian/olap/fun/BuiltinFunTable.java | [
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public static DDSImage read(File file) throws IOException { DDSImage image = new DDSImage(); image.readFromFile(file); return image; | public static DDSImage read(String filename) throws IOException { return read(new File(filename)); | public static DDSImage read(File file) throws IOException { DDSImage image = new DDSImage(); image.readFromFile(file); return image; } | 47282 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47282/437584608fa8e479ba13f209ff42d609bda5c41d/DDSImage.java/buggy/src/classes/com/sun/opengl/util/texture/spi/DDSImage.java | [
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result = result + "Real life name : " + firstname + " " + lastname + "<br>"; | result = result + "Real life name : " + firstname + " " + lastname + "<br>"; | public void doPost(HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { String value = request.getParameter("userId"); Integer userId; ResultSet rs = null; ServletPrinter sp = null; PreparedStatement stmt = null; Connection conn = null; sp = new Ser... | 5750 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5750/29aeaa45e490b66677377d97eeed1c49453158fe/ViewUserInfo.java/clean/Servlets/edu/rice/rubis/servlets/ViewUserInfo.java | [
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return RubyString.newString(recv.getRuntime(), output.toString()); | return recv.getRuntime().newString(output.toString()); | public static IRubyObject backquote(IRubyObject recv, IRubyObject aString) { StringBuffer output = new StringBuffer(); Ruby runtime = recv.getRuntime(); runtime.getGlobalVariables().set("$?", RubyFixnum.newFixnum(runtime, runInShell(runtime, aString.toString(), output))); ... | 46258 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46258/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyKernel.java/clean/src/org/jruby/RubyKernel.java | [
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public void testReportDocument(){ | public void testReportDocument( ) { | public void testReportDocument(){ String report_design=path+INPUT_FOLDER+System.getProperty("file.separator")+"report_document.rptdesign"; String report_document=path+OUTPUT_FOLDER+System.getProperty("file.separator")+"report_document"; try{ createReportDocument_param(report_design,report_document); IDocArchive... | 58644 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58644/9986640bc1706978adfbcb99f734669ec77eff7b/ReportDocumentTest.java/buggy/plugins/org.eclipse.birt.report.tests.engine/src/org/eclipse/birt/report/tests/engine/api/ReportDocumentTest.java | [
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if (!ld[i].equals(Const.FILE_SEPARATOR)) | if (!ld[i].equals(RepositoryDirectory.DIRECTORY_SEPARATOR)) | private void addMenuLast() { int idx = msFile.indexOf(miFileSep3); int max = msFile.getItemCount(); // Remove everything until end... for (int i=max-1;i>idx;i--) { MenuItem mi = msFile.getItem(i); mi.dispose(); } // Previously loaded files... String lf[] = props.getLastFiles(); String ld[] = props.... | 9547 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9547/57aac50193bcb56732b265a22cbd966d52e9bba4/Chef.java/clean/src/be/ibridge/kettle/chef/Chef.java | [
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warn("PMP Convention error: " + e.toString()); | logger.debug("PMP Convention error: " + e.toString()); | public void characterData (char ch[], int start, int length) { String s = toString(ch, start, length).trim(); System.out.println("Start PMP chardata (" + CurrentElement + ") :" + s); System.out.println(" ElTitle: " + elementTitle); if (CurrentElement == STRING && BUILTIN.equals("spacegroup")) { cdo.setObjectPro... | 45254 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45254/e04a2bbd6afdac34488441c1ce22ad5f73d254ff/PMPConvention.java/clean/org/openscience/cdk/io/cml/PMPConvention.java | [
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writer.println(iterBuffer.toString()); | writeLoggedResponse(iterBuffer.toString()); | private void doNEWGROUPS(String argument) { // see section 11.3 // both draft-ietf-nntpext-base-15.txt and rfc977 have only group names // in response lines, but INN sends // '<group name> <last article> <first article> <posting allowed>' // NOTE: following INN over either docum... | 47102 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47102/6b54eac7b4c3f7f951e1d4ead1ff4db387065ce7/NNTPHandler.java/clean/src/java/org/apache/james/nntpserver/NNTPHandler.java | [
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iCodeTop = addByte(incrDecrType, iCodeTop); | iCodeTop = addByte(incrDecrMask, iCodeTop); | private int visitIncDec(Node node, Node child, int iCodeTop) { int incrDecrType = node.getExistingIntProp(Node.INCRDECR_PROP); int childType = child.getType(); switch (childType) { case Token.GETVAR : { String name = child.getString(); if (itsData.itsNeedsActiv... | 12904 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12904/a3039484fe39a3dbe840a19951dc87f44221e7eb/Interpreter.java/buggy/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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public void setElementName(String elementName); | void setElementName(String elementName); | public void setElementName(String elementName); | 51800 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51800/cbaa8d2430c2bf467e589a423fee7c83e3f0eb2f/LocationAware.java/clean/src/java/org/apache/commons/jelly/LocationAware.java | [
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public void widgetSelected( SelectionEvent e ) { if ( e.widget.equals( btnOK ) ) { applyMarkerIcon = true; shell.dispose( ); } else if ( e.widget.equals( btnCancel ) ) { shell.dispose( ); } else if ( e.widget.equals( btnURL ) ) { switchTo( URI_TYPE ); } else if ( e.widget.equals( btnLocal ) ) { ... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/35716ab15c704bd8d6af207ac5582799656265b0/MarkerIconDialog.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/composites/MarkerIconDialog.java | [
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setDataBackground(Color.white); | private void init() { URL markerURL; /* ** Get the passed parameters */ String mfile = "marker.txt"; /* ** Create the Graph instance and modify the default behaviour */ drawzero = true; drawgrid = true; borderTop = 10; ... | 7169 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7169/28e74209096767ca621515e8d7e09be49b612d88/CLinePlotChart.java/clean/uiframework/src/org/cougaar/lib/uiframework/ui/components/CLinePlotChart.java | [
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return new JaxenXPath(path); | if (jaxen == null) { try { Class clz = Class.forName("org.jdom.xpath.JaxenXPath"); jaxen = clz.getConstructor(new Class[] {String.class}); } catch (ClassNotFoundException cnfe) { throw new JDOMException(cnfe.toString()); } catch (NoSuchMethodException nsme) { throw new JDOMException(nsme.toString()); } } try { return ... | public static XPath newInstance(String path) throws JDOMException { return new JaxenXPath(path); } | 49530 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49530/45f387adaa3ca3a1c55c51c3aabc7dca00fc9427/XPath.java/buggy/core/src/java/org/jdom/xpath/XPath.java | [
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if (jj_scan_token(CONTINUE)) return true; if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; | if (jj_3R_135()) return true; | final private boolean jj_3R_126() { if (jj_scan_token(CONTINUE)) return true; if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; return false; } | 6527 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6527/da645dc04442445e7ffc49c76d475409ee62c51f/PythonGrammar.java/clean/org/python/parser/PythonGrammar.java | [
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if (node.getType() == Constants.NODE_BLOCK_PASS) { | if (node.getType() == Constants.NODE_ARRAY && node.getNextNode() == null) { return node.getHeadNode(); } else if (node.getType() == Constants.NODE_BLOCK_PASS) { | public Node ret_args(Node node) { if (node != null) { if (node.getType() == Constants.NODE_BLOCK_PASS) { rb_compile_error("block argument should not be given"); } } return node; } | 49687 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49687/fe5b7835d80b52a0683d503660a7f722b7af69b1/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java | [
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progressViewer.setInput(this); | progressViewer.refresh(true); | public void remove(Object[] elements) { progressViewer.setInput(this); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/5d160b6205264478d3a1546cb460bf2521c53a19/ProgressViewerContentProvider.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/ProgressViewerContentProvider.java | [
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docDecl.DIAG_BAD_LITERAL_WRAPUP, | REDocumentDeclaration.DIAG_BAD_LITERAL_WRAPUP, | private final String diagnoseUnexpectedLiteral( StringToken token ) { final StringRecoveryToken srt = new StringRecoveryToken(token); // this residual corresponds to the expression we get // when we replace thie unexpected token by one of expected tokens. Expression recoveryResidual = docDecl.resCalc.calcResid... | 45720 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45720/cfae98bcc8b60a29fd26b6aa2cbf97feedb46bd9/ExpressionAcceptor.java/clean/msv/src/com/sun/msv/verifier/regexp/ExpressionAcceptor.java | [
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VM.sysWrite(" MCSites[index-1] = "); VM.sysWrite(machCodeOffset - MCSites[index-1]); VM.sysWrite("\n"); | VM.sysWrite(" MCSites[index-1] = "); VM.sysWrite(machCodeOffset.sub(MCSites[index-1])); VM.sysWrite("\n"); | public int locateGCPoint(int machCodeOffset, VM_Method method) { machCodeOffset = machCodeOffset - (1 << VM.LG_INSTRUCTION_WIDTH); // this assumes that machCodeOffset points // to "next" instruction eg bal type instruction if (VM.TraceStkMaps) { VM.sysWrite("VM_ReferenceMaps-locateGCPoint for machine ... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/511bde1d92a455acafb864be1f3383b0a2d5c0e0/VM_ReferenceMaps.java/buggy/rvm/src/vm/compilers/baseline/GCMap/VM_ReferenceMaps.java | [
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double score = 0.0; | private void calcCell(Cell [][] cells) throws IllegalSymbolException, IllegalAlphabetException, IllegalTransitionException { Cell curCell = cells[0][0]; double[] curCol = curCell.scores; STATELOOP: for (int l = states.length - 1; l >= 0; --l) { //System.out.println("State = " +... | 50397 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50397/f34f99e864e9e8905fb53dcbad1bf1ae9678cc15/PairwiseDP.java/buggy/src/org/biojava/bio/dp/PairwiseDP.java | [
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column.setToolTipText(oldShell, null, column.toolTipText); column.setToolTipText(newShell, column.toolTipText, null); | column.setToolTipText(oldShell, null); column.setToolTipText(newShell, column.toolTipText); | void fixChildren (Shell newShell, Shell oldShell, Decorations newDecorations, Decorations oldDecorations, Menu [] menus) { super.fixChildren (newShell, oldShell, newDecorations, oldDecorations, menus); for (int i=0; i<columnCount; i++) { TreeColumn column = columns [i]; if (column.toolTipText != null) { column.setT... | 12413 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12413/dee160fb77b5c2e7ab5959e6351f379e6f244071/Tree.java/clean/bundles/org.eclipse.swt/Eclipse SWT/gtk/org/eclipse/swt/widgets/Tree.java | [
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if (data != null) { block.setFlags(block.getFlags() | ASTNode.RECOVERED); } | private ASTNode internalCreateASTForKind() { final ASTConverter converter = new ASTConverter(this.compilerOptions, false, null); converter.compilationUnitSource = this.rawSource; converter.compilationUnitSourceLength = this.rawSource.length; converter.scanner.setSource(this.rawSource); AST ast = AST.newAST(this... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/6e0e34ccee3902df04c0b7e36099dc48350ccb65/ASTParser.java/clean/org.eclipse.jdt.core/dom/org/eclipse/jdt/core/dom/ASTParser.java | [
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public Axis() { axisBG = new BranchGroup(); textBG = new BranchGroup(); surfaceBG = new BranchGroup(); // create line for X axis ==> MAPPED TO seismic Z direction LineArray axisXLines = new LineArray(2, LineArray.COORDINATES ); ... | 52623 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52623/e08eff9ddb51638dbb1d796669535c05f81f42c2/PartMo.java/clean/src/edu/sc/seis/fissuresUtil/parmo3d/PartMo.java | [
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fDocumentHandler.startDocument(locator, encoding, fNamespaceSupport, augs); | fDocumentHandler.startDocument(locator, encoding, namespaceContext, augs); | public void startDocument(XMLLocator locator, String encoding, NamespaceContext namespaceContext, Augmentations augs) throws XNIException { // call handlers // get initial grammars if(fGrammarPool != null) { Grammar [] grammars = fGrammarPool.retriev... | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/41a9eddf1f69a94ac4334a19d85b1a0424c4bcae/XMLDTDValidator.java/buggy/src/org/apache/xerces/impl/dtd/XMLDTDValidator.java | [
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public Object getCell( int i, int j ) | public Object getCell( int rowNumber, int columnNumber, boolean bool ) | public Object getCell( int i, int j ) { return getCell( i, j, true ); } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/2655e49f6bd5f775b5c2b054b48a75ff7be51e76/TableHandleAdapter.java/buggy/UI/org.eclipse.birt.report.designer.core/src/org/eclipse/birt/report/designer/core/model/schematic/TableHandleAdapter.java | [
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createLabel( propertiesSection, LABEL_LIST_OF_VALUE ); | createLabel( propertiesSection, LABEL_LIST_OF_VALUE, maxStrLengthProperty ); | private void createPropertiesSection( Composite composite ) { Group propertiesSection = new Group( composite, SWT.NONE ); propertiesSection.setText( GROUP_PROPERTIES ); propertiesSection.setLayout( new GridLayout( 2, false ) ); propertiesSection.setLayoutData( new GridData( GridData.FILL_HORIZONTAL ) ); createLab... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/4fe09b53fc6ad2edcaeb950e226a6b5c999af9a3/ParameterDialog.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/ParameterDialog.java | [
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public static Element encodeWiki(Element parent, ZimbraContext lc, WikiItem wiki, String part) throws ServiceException { Element m; m = encodeMessageCommon(parent, lc, wiki, NOTIFY_FIELDS); m.addAttribute(MailService.A_ID, lc.formatItemId(wiki)); m.addAttribute(MailService.A_SUBJECT, wiki.getSubject()); m.addAttribute... | public static Element encodeWiki(Element parent, ZimbraContext lc, WikiItem wiki) { return encodeWiki(parent, lc, wiki, NOTIFY_FIELDS); | public static Element encodeWiki(Element parent, ZimbraContext lc, WikiItem wiki, String part) throws ServiceException { Element m; m = encodeMessageCommon(parent, lc, wiki, NOTIFY_FIELDS); m.addAttribute(MailService.A_ID, lc.formatItemId(wiki)); m.addAttribute(MailService.A_SUBJECT, wiki.g... | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/8d944d6b4492dd133f8272bef1dcf3063482aed7/ToXML.java/buggy/ZimbraServer/src/java/com/zimbra/cs/service/mail/ToXML.java | [
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logicsheet = new Logicsheet(inputSource, manager, | logicsheet = new Logicsheet(logicsheetName, manager, | protected void addLogicsheetToList(LanguageDescriptor language, String logicsheetLocation) throws IOException, SAXException, ProcessingException { Logicsheet logicsheet = (Logicsheet)logicsheetCache.get(CACHE_PREFIX + logicsheetLocation); if (logicsheet ... | 46428 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46428/650a07e296374c20579de9787eab9dcdb6a8a9cc/AbstractMarkupLanguage.java/clean/blocks/cocoon-xsp/cocoon-xsp-impl/src/main/java/org/apache/cocoon/components/language/markup/AbstractMarkupLanguage.java | [
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label_47: | label_49: | final public void MemberValueArrayInitializer() throws ParseException { /*@bgen(jjtree) MemberValueArrayInitializer */ ASTMemberValueArrayInitializer jjtn000 = new ASTMemberValueArrayInitializer(this, JJTMEMBERVALUEARRAYINITIALIZER); boolean jjtc000 = true; jjtree.openNodeScope(jjtn000); try { jj_consume_t... | 45569 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45569/3afd4630754ba5d6642f3e8a1c9aa5162eff7e9f/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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public static int getLength(Object array) { | public static int getLength(Object array) { | public static int getLength(Object array) { if (array instanceof Object[]) return ((Object[]) array).length; if (array instanceof boolean[]) return ((boolean[]) array).length; if (array instanceof byte[]) return ((byte[]) array).length; if (array instanceof char[]) return ((char[]) array).length; if (arra... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/a7d00a0887a14efd1decaed4a9310cdaa2e752aa/Array.java/buggy/core/src/classpath/java/java/lang/reflect/Array.java | [
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return table; | return tableViewer.getTable(); | protected Table getTable() { return table; } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/1b0f37bc4a054e18b1a977d97d5a410a1f6896d6/CustomizationTab.java/buggy/bundles/org.eclipse.ui.navigator/src/org/eclipse/ui/internal/navigator/filters/CustomizationTab.java | [
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if(DataFlavor.stringFlavor.equals(flavors[i])) | if(flavors[i].equals( DataFlavor.javaFileListFlavor)) | public boolean canImport(JComponent c, DataFlavor[] flavors) { JEditTextArea textArea = (JEditTextArea)c; if(!textArea.isEditable()) return false; for(int i = 0; i < flavors.length; i++) { if(DataFlavor.stringFlavor.equals(flavors[i])) { return textArea.isEditable(); } else if(DataFlavor.j... | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/b57dda1d711e69f6c5059ca5b832f64bd791f34e/Java14.java/buggy/org/gjt/sp/jedit/Java14.java | [
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viewContributionCount, commandManager, handlerService, bindingManager, commandImageManager, menuService, sourceProviders); | viewContributionCount); | public final void read() { super.read(); // Create the extension registry mementos. final IExtensionRegistry registry = Platform.getExtensionRegistry(); int actionSetCount = 0; int editorContributionCount = 0; int objectContributionCount = 0; int viewContributionCount = 0; int viewerContributionCount = 0; fin... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/97610ef9afbe6c924e048d8d60c2f4721860850b/LegacyActionPersistence.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/menus/LegacyActionPersistence.java | [
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return new Integer( rs.getInt( 1 ) ); } | return new Integer( rs.getInt( 1 ) ); } | public Object mapOneRow( ResultSet rs ) throws SQLException { return new Integer( rs.getInt( 1 ) ); } | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/817ca2fc9689d1a8c9687d4f79cc5afb059c2c21/DatabaseService.java/clean/server/src/imcode/server/db/DatabaseService.java | [
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