idx
int64
0
165k
question
stringlengths
73
4.15k
target
stringlengths
5
918
len_question
int64
21
890
len_target
int64
3
255
16,000
@ Override public void close ( ) { synchronized ( this ) { if ( object != null ) { T object_ = object ; object = null ; try { finalizer . accept ( object_ ) ; } catch ( Exception e ) { // Ignored } } } }
Close the lazy factory and destroy the instance if created .
56
11
16,001
public ByteArrayQueue add ( byte [ ] b , int off , int len ) { int newLength = addLength ( len ) ; System . arraycopy ( b , off , array , offset + length , len ) ; length = newLength ; return this ; }
Adds a sequence of bytes into the tail of the queue .
55
12
16,002
public ByteArrayQueue add ( int b ) { int newLength = addLength ( 1 ) ; array [ offset + length ] = ( byte ) b ; length = newLength ; return this ; }
Adds one byte into the tail of the queue .
41
10
16,003
public ByteArrayQueue remove ( byte [ ] b , int off , int len ) { System . arraycopy ( array , offset , b , off , len ) ; return remove ( len ) ; }
Retrieves a sequence of bytes from the head of the queue .
41
14
16,004
public ByteArrayQueue remove ( int len ) { offset += len ; length -= len ; // Release buffer if empty if ( length == 0 && array . length > 1024 ) { array = new byte [ 32 ] ; offset = 0 ; shared = false ; } return this ; }
Removes a sequence of bytes from the head of the queue .
57
13
16,005
public List < String > escapePiecesForUri ( final List < String > pieces ) { final List < String > escapedPieces = new ArrayList <> ( pieces . size ( ) ) ; for ( final String piece : pieces ) { final String escaped = escapeForUri ( piece ) ; escapedPieces . add ( escaped ) ; } return escapedPieces ; }
Do a poor man s URI escaping . We aren t terribly interested in precision here or in introducing a library that would do it better .
79
27
16,006
public void addIds ( Collection < String > ids ) { if ( this . ids == null ) { this . ids = new ArrayList <> ( ids ) ; } else { this . ids . retainAll ( ids ) ; if ( this . ids . isEmpty ( ) ) { LOGGER . warn ( "No ids remain after addIds. All elements will be filtered out." ) ; } } }
When called the first time all ids are added to the filter . When called two or more times the provided id s are and ed with the those provided in the previous lists .
94
36
16,007
private static void forceInit ( Class < ? > cls ) { try { Class . forName ( cls . getName ( ) , true , cls . getClassLoader ( ) ) ; } catch ( ClassNotFoundException e ) { throw new IllegalArgumentException ( "Can't initialize class " + cls , e ) ; } }
Force initialization of the static members . As of Java 5 referencing a class doesn t force it to initialize . Since this class requires that the classes be initialized to declare their comparators we force that initialization to happen .
73
42
16,008
public static int readInt ( byte [ ] bytes , int start ) { return ( ( ( bytes [ start ] & 0xff ) << 24 ) + ( ( bytes [ start + 1 ] & 0xff ) << 16 ) + ( ( bytes [ start + 2 ] & 0xff ) << 8 ) + ( ( bytes [ start + 3 ] & 0xff ) ) ) ; }
Parse an integer from a byte array .
79
9
16,009
public static long readLong ( byte [ ] bytes , int start ) { return ( ( long ) ( readInt ( bytes , start ) ) << 32 ) + ( readInt ( bytes , start + 4 ) & 0xFFFFFFFF L ) ; }
Parse a long from a byte array .
52
9
16,010
public static long readVLong ( byte [ ] bytes , int start ) throws IOException { int len = bytes [ start ] ; if ( len >= - 112 ) { return len ; } boolean isNegative = ( len < - 120 ) ; len = isNegative ? - ( len + 120 ) : - ( len + 112 ) ; if ( start + 1 + len > bytes . length ) { throw new IOException ( "Not enough nu...
Reads a zero - compressed encoded long from a byte array and returns it .
174
16
16,011
public static String getVertexId ( Value value ) { byte [ ] buffer = value . get ( ) ; int offset = 0 ; // skip label int strLen = readInt ( buffer , offset ) ; offset += 4 ; if ( strLen > 0 ) { offset += strLen ; } strLen = readInt ( buffer , offset ) ; return readString ( buffer , offset , strLen ) ; }
fast access method to avoid creating a new instance of an EdgeInfo
85
13
16,012
public static < T > boolean intersectsAll ( T [ ] a1 , T [ ] a2 ) { for ( T anA1 : a1 ) { if ( ! contains ( a2 , anA1 ) ) { return false ; } } for ( T anA2 : a2 ) { if ( ! contains ( a1 , anA2 ) ) { return false ; } } return true ; }
Determines if all values in a1 appear in a2 and that all values in a2 appear in a2 .
87
25
16,013
public static byte [ ] decode ( String chars ) { if ( chars == null || chars . length ( ) == 0 ) { throw new IllegalArgumentException ( "You must provide a non-zero length input" ) ; } //By using five ASCII characters to represent four bytes of binary data the encoded size ¹⁄₄ is larger than the original BigDecimal dec...
This is a very simple base85 decoder . It respects the z optimization for empty chunks and strips whitespace between characters to respect line limits .
598
29
16,014
public int compareTo ( ByteSequence obs ) { if ( isBackedByArray ( ) && obs . isBackedByArray ( ) ) { return WritableComparator . compareBytes ( getBackingArray ( ) , offset ( ) , length ( ) , obs . getBackingArray ( ) , obs . offset ( ) , obs . length ( ) ) ; } return compareBytes ( this , obs ) ; }
Compares this byte sequence to another .
89
8
16,015
public static GeoPoint calculateCenter ( List < GeoPoint > geoPoints ) { checkNotNull ( geoPoints , "geoPoints cannot be null" ) ; checkArgument ( geoPoints . size ( ) > 0 , "must have at least 1 geoPoints" ) ; if ( geoPoints . size ( ) == 1 ) { return geoPoints . get ( 0 ) ; } double x = 0.0 ; double y = 0.0 ; double ...
For large distances center point calculation has rounding errors
368
9
16,016
public static byte [ ] escape ( byte [ ] auth , boolean quote ) { int escapeCount = 0 ; for ( int i = 0 ; i < auth . length ; i ++ ) { if ( auth [ i ] == ' ' || auth [ i ] == ' ' ) { escapeCount ++ ; } } if ( escapeCount > 0 || quote ) { byte [ ] escapedAuth = new byte [ auth . length + escapeCount + ( quote ? 2 : 0 ) ...
Properly escapes an authorization string . The string can be quoted if desired .
207
16
16,017
public static byte [ ] quote ( byte [ ] term ) { boolean needsQuote = false ; for ( int i = 0 ; i < term . length ; i ++ ) { if ( ! Authorizations . isValidAuthChar ( term [ i ] ) ) { needsQuote = true ; break ; } } if ( ! needsQuote ) { return term ; } return VisibilityEvaluator . escape ( term , true ) ; }
Properly quotes terms in a column visibility expression . If no quoting is needed then nothing is done .
90
21
16,018
public static int hash32 ( byte [ ] data , int length , int seed ) { int hash = seed ; final int nblocks = length >> 2 ; // body for ( int i = 0 ; i < nblocks ; i ++ ) { int i_4 = i << 2 ; int k = ( data [ i_4 ] & 0xff ) | ( ( data [ i_4 + 1 ] & 0xff ) << 8 ) | ( ( data [ i_4 + 2 ] & 0xff ) << 16 ) | ( ( data [ i_4 + 3...
Murmur3 32 - bit variant .
369
8
16,019
public static long hash64 ( byte [ ] data , int offset , int length , int seed ) { long hash = seed ; final int nblocks = length >> 3 ; // body for ( int i = 0 ; i < nblocks ; i ++ ) { final int i8 = i << 3 ; long k = ( ( long ) data [ offset + i8 ] & 0xff ) | ( ( ( long ) data [ offset + i8 + 1 ] & 0xff ) << 8 ) | ( (...
Murmur3 64 - bit variant . This is essentially MSB 8 bytes of Murmur3 128 - bit variant .
554
24
16,020
protected boolean hasValidFile ( Artifact artifact ) { // Make sure the file exists. boolean hasValidFile = artifact != null && artifact . getFile ( ) != null && artifact . getFile ( ) . exists ( ) ; // Exclude project POM file. hasValidFile = hasValidFile && ! artifact . getFile ( ) . getPath ( ) . equals ( project . ...
Decide whether the artifact file should be processed .
141
10
16,021
private Map < String , Map < String , String > > readSummaryFile ( File outputFile ) throws ExecutionException { List < String > algorithms = new ArrayList < String > ( ) ; Map < String , Map < String , String > > filesHashcodes = new HashMap < String , Map < String , String > > ( ) ; BufferedReader reader = null ; try...
Read the summary file
208
4
16,022
private void sync ( final DirContext ctx , final AlpineQueryManager qm , final LdapConnectionWrapper ldap , LdapUser user ) throws NamingException { LOGGER . debug ( "Syncing: " + user . getUsername ( ) ) ; final SearchResult result = ldap . searchForSingleUsername ( ctx , user . getUsername ( ) ) ; if ( result != null...
Performs the actual sync of the specified user .
323
10
16,023
public static int determineNumberOfWorkerThreads ( ) { final int threads = Config . getInstance ( ) . getPropertyAsInt ( Config . AlpineKey . WORKER_THREADS ) ; if ( threads > 0 ) { return threads ; } else if ( threads == 0 ) { final int cores = SystemUtil . getCpuCores ( ) ; final int multiplier = Config . getInstance...
Calculates the number of worker threads to use . Minimum return value is 1 .
145
17
16,024
@ SafeVarargs protected final List < ValidationError > contOnValidationError ( final Set < ConstraintViolation < Object > > ... violationsArray ) { final List < ValidationError > errors = new ArrayList <> ( ) ; for ( final Set < ConstraintViolation < Object > > violations : violationsArray ) { for ( final ConstraintVio...
Accepts the result from one of the many validation methods available and returns a List of ValidationErrors . If the size of the List is 0 no errors were encounter during validation .
254
37
16,025
protected final List < ValidationException > contOnValidationError ( final ValidationTask ... validationTasks ) { final List < ValidationException > errors = new ArrayList <> ( ) ; for ( final ValidationTask validationTask : validationTasks ) { if ( ! validationTask . isRequired ( ) && validationTask . getInput ( ) == ...
Given one or mote ValidationTasks this method will return a List of ValidationErrors . If the size of the List is 0 no errors were encountered during validation .
142
36
16,026
@ PostConstruct private void initialize ( ) { final MultivaluedMap < String , String > queryParams = uriInfo . getQueryParameters ( ) ; final String offset = multiParam ( queryParams , "offset" ) ; final String page = multiParam ( queryParams , "page" , "pageNumber" ) ; final String size = multiParam ( queryParams , "s...
Initializes this resource instance by populating some of the features of this class
440
15
16,027
protected Principal getPrincipal ( ) { final Object principal = requestContext . getProperty ( "Principal" ) ; if ( principal != null ) { return ( Principal ) principal ; } else { return null ; } }
Returns the principal for who initiated the request .
45
9
16,028
protected boolean hasPermission ( final String permission ) { if ( getPrincipal ( ) == null ) { return false ; } try ( AlpineQueryManager qm = new AlpineQueryManager ( ) ) { boolean hasPermission = false ; if ( getPrincipal ( ) instanceof ApiKey ) { hasPermission = qm . hasPermission ( ( ApiKey ) getPrincipal ( ) , per...
Convenience method that returns true if the principal has the specified permission or false if not .
139
19
16,029
public static boolean matches ( final char [ ] assertedPassword , final ManagedUser user ) { final char [ ] prehash = createSha512Hash ( assertedPassword ) ; // Todo: remove String when Jbcrypt supports char[] return BCrypt . checkpw ( new String ( prehash ) , user . getPassword ( ) ) ; }
Checks the validity of the asserted password against a ManagedUsers actual hashed password .
73
18
16,030
private static char [ ] createSha512Hash ( final char [ ] password ) { try { final MessageDigest digest = MessageDigest . getInstance ( "SHA-512" ) ; digest . update ( ByteUtil . toBytes ( password ) ) ; final byte [ ] byteData = digest . digest ( ) ; final StringBuilder sb = new StringBuilder ( ) ; for ( final byte da...
Creates a SHA - 512 hash of the specified password and returns a HEX representation of the hash . This method should NOT be used solely for password hashing but in conjunction with password - specific hashing functions .
181
41
16,031
public void init ( final FilterConfig filterConfig ) { final String host = filterConfig . getInitParameter ( "host" ) ; if ( StringUtils . isNotBlank ( host ) ) { this . host = host ; } }
Initialize host parameter from web . xml .
50
9
16,032
private void startDbServer ( ) { final String mode = Config . getInstance ( ) . getProperty ( Config . AlpineKey . DATABASE_MODE ) ; final int port = Config . getInstance ( ) . getPropertyAsInt ( Config . AlpineKey . DATABASE_PORT ) ; if ( StringUtils . isEmpty ( mode ) || ! ( "server" . equals ( mode ) || "embedded" ....
Starts the H2 database engine if the database mode is set to server
293
15
16,033
private void init ( ) { if ( properties != null ) { return ; } LOGGER . info ( "Initializing Configuration" ) ; properties = new Properties ( ) ; final String alpineAppProp = PathUtil . resolve ( System . getProperty ( ALPINE_APP_PROP ) ) ; if ( StringUtils . isNotBlank ( alpineAppProp ) ) { LOGGER . info ( "Loading ap...
Initialize the Config object . This method should only be called once .
612
14
16,034
private String getPropertyFromEnvironment ( Key key ) { final String envVariable = key . getPropertyName ( ) . toUpperCase ( ) . replace ( "." , "_" ) ; try { return StringUtils . trimToNull ( System . getenv ( envVariable ) ) ; } catch ( SecurityException e ) { LOGGER . warn ( "A security exception prevented access to...
Attempts to retrieve the key via environment variable . Property names are always upper case with periods replaced with underscores .
122
21
16,035
public boolean hasUpgradeRan ( final Class < ? extends UpgradeItem > upgradeClass ) throws SQLException { PreparedStatement statement = null ; ResultSet results = null ; try { statement = connection . prepareStatement ( "SELECT \"UPGRADECLASS\" FROM \"INSTALLEDUPGRADES\" WHERE \"UPGRADECLASS\" = ?" ) ; statement . setS...
Determines if the specified upgrade already has a record of being executed previously or not .
157
18
16,036
public void installUpgrade ( final Class < ? extends UpgradeItem > upgradeClass , final long startTime , final long endTime ) throws SQLException { PreparedStatement statement = null ; try { statement = connection . prepareStatement ( "INSERT INTO \"INSTALLEDUPGRADES\" (\"UPGRADECLASS\", \"STARTTIME\", \"ENDTIME\") VAL...
Documents a record in the database for the specified class indicating it has been executed .
237
16
16,037
public VersionComparator getSchemaVersion ( ) { PreparedStatement statement = null ; ResultSet results = null ; try { statement = connection . prepareStatement ( "SELECT \"VERSION\" FROM \"SCHEMAVERSION\"" ) ; results = statement . executeQuery ( ) ; if ( results . next ( ) ) { return new VersionComparator ( results . ...
Retrieves the current schema version documented in the database .
140
12
16,038
public void updateSchemaVersion ( VersionComparator version ) throws SQLException { PreparedStatement statement = null ; PreparedStatement updateStatement = null ; ResultSet results = null ; try { statement = connection . prepareStatement ( "SELECT \"VERSION\" FROM \"SCHEMAVERSION\"" ) ; results = statement . executeQu...
Updates the schema version in the database .
325
9
16,039
private String getValue ( FilterConfig filterConfig , String initParam , String variable ) { final String value = filterConfig . getInitParameter ( initParam ) ; if ( StringUtils . isNotBlank ( value ) ) { return value ; } else { return variable ; } }
Returns the value of the initParam .
59
8
16,040
private String formatHeader ( ) { final StringBuilder sb = new StringBuilder ( ) ; getStringFromValue ( sb , "default-src" , defaultSrc ) ; getStringFromValue ( sb , "script-src" , scriptSrc ) ; getStringFromValue ( sb , "style-src" , styleSrc ) ; getStringFromValue ( sb , "img-src" , imgSrc ) ; getStringFromValue ( sb...
Formats a CSP header
330
6
16,041
private void getStringFromValue ( final StringBuilder builder , final String directive , final String value ) { if ( value != null ) { builder . append ( directive ) . append ( " " ) . append ( value ) . append ( ";" ) ; } }
Assists in the formatting of a single CSP directive .
54
12
16,042
public Principal authenticate ( ) throws AlpineAuthenticationException { LOGGER . debug ( "Attempting to authenticate user: " + username ) ; final ManagedUserAuthenticationService userService = new ManagedUserAuthenticationService ( username , password ) ; try { final Principal principal = userService . authenticate ( ...
Attempts to authenticate the credentials internally first and if not successful checks to see if LDAP is enabled or not . If enabled a second attempt to authenticate the credentials will be made but this time against the directory service .
253
44
16,043
private static void init ( ) { if ( hasInitialized ) { return ; } final String osName = System . getProperty ( "os.name" ) ; if ( osName != null ) { final String osNameLower = osName . toLowerCase ( ) ; isWindows = osNameLower . contains ( "windows" ) ; isMac = osNameLower . contains ( "mac os x" ) || osNameLower . con...
Initialize static variables .
300
5
16,044
public void advancePagination ( ) { if ( pagination . isPaginated ( ) ) { pagination = new Pagination ( pagination . getStrategy ( ) , pagination . getOffset ( ) + pagination . getLimit ( ) , pagination . getLimit ( ) ) ; } }
Advances the pagination based on the previous pagination settings . This is purely a convenience method as the method by itself is not aware of the query being executed the result count etc .
65
37
16,045
public Query decorate ( final Query query ) { // Clear the result to fetch if previously specified (i.e. by getting count) query . setResult ( null ) ; if ( pagination != null && pagination . isPaginated ( ) ) { final long begin = pagination . getOffset ( ) ; final long end = begin + pagination . getLimit ( ) ; query ....
Given a query this method will decorate that query with pagination ordering and sorting direction . Specific checks are performed to ensure the execution of the query is capable of being paged and that ordering can be securely performed .
278
43
16,046
@ SuppressWarnings ( "unchecked" ) public < T > T persist ( T object ) { pm . currentTransaction ( ) . begin ( ) ; pm . makePersistent ( object ) ; pm . currentTransaction ( ) . commit ( ) ; pm . getFetchPlan ( ) . setDetachmentOptions ( FetchPlan . DETACH_LOAD_FIELDS ) ; pm . refresh ( object ) ; return object ; }
Persists the specified PersistenceCapable object .
93
10
16,047
@ SuppressWarnings ( "unchecked" ) public < T > T [ ] persist ( T ... pcs ) { pm . currentTransaction ( ) . begin ( ) ; pm . makePersistentAll ( pcs ) ; pm . currentTransaction ( ) . commit ( ) ; pm . getFetchPlan ( ) . setDetachmentOptions ( FetchPlan . DETACH_LOAD_FIELDS ) ; pm . refreshAll ( pcs ) ; return pcs ; }
Persists the specified PersistenceCapable objects .
102
10
16,048
public < T > T detach ( Class < T > clazz , Object id ) { pm . getFetchPlan ( ) . setDetachmentOptions ( FetchPlan . DETACH_LOAD_FIELDS ) ; return pm . detachCopy ( pm . getObjectById ( clazz , id ) ) ; }
Refreshes and detaches an object by its ID .
66
12
16,049
public < T > T getObjectById ( Class < T > clazz , Object id ) { return pm . getObjectById ( clazz , id ) ; }
Retrieves an object by its ID .
34
9
16,050
public void init ( final FilterConfig filterConfig ) { final String allowParam = filterConfig . getInitParameter ( "allowUrls" ) ; if ( StringUtils . isNotBlank ( allowParam ) ) { this . allowUrls = allowParam . split ( "," ) ; } }
Initialize allowUrls parameter from web . xml .
63
11
16,051
public void doFilter ( final ServletRequest request , final ServletResponse response , final FilterChain chain ) throws IOException , ServletException { final HttpServletRequest req = ( HttpServletRequest ) request ; final HttpServletResponse res = ( HttpServletResponse ) response ; final String requestUri = req . getR...
Check for allowed URLs being requested .
201
7
16,052
@ POST @ Produces ( MediaType . TEXT_PLAIN ) @ ApiOperation ( value = "Assert login credentials" , notes = "Upon a successful login, a JWT will be returned in the response. This functionality requires authentication to be enabled." , response = String . class ) @ ApiResponses ( value = { @ ApiResponse ( code = 200 , me...
Processes login requests .
370
5
16,053
public static byte [ ] toBytes ( char [ ] chars ) { final CharBuffer charBuffer = CharBuffer . wrap ( chars ) ; final ByteBuffer byteBuffer = Charset . forName ( "UTF-8" ) . encode ( charBuffer ) ; final byte [ ] bytes = Arrays . copyOfRange ( byteBuffer . array ( ) , byteBuffer . position ( ) , byteBuffer . limit ( ) ...
Converts a char array to a byte array without the use of Strings .
135
16
16,054
public void init ( final FilterConfig filterConfig ) { final String denyParam = filterConfig . getInitParameter ( "denyUrls" ) ; if ( StringUtils . isNotBlank ( denyParam ) ) { this . denyUrls = denyParam . split ( "," ) ; } final String ignoreParam = filterConfig . getInitParameter ( "ignoreUrls" ) ; if ( StringUtils ...
Initialize deny parameter from web . xml .
115
9
16,055
public void doFilter ( final ServletRequest request , final ServletResponse response , final FilterChain chain ) throws IOException , ServletException { final HttpServletRequest req = ( HttpServletRequest ) request ; final HttpServletResponse res = ( HttpServletResponse ) response ; final String requestUri = req . getR...
Check for denied or ignored URLs being requested .
201
9
16,056
protected void scheduleEvent ( final Event event , final long delay , final long period ) { final Timer timer = new Timer ( ) ; timer . schedule ( new ScheduleEvent ( ) . event ( event ) , delay , period ) ; timers . add ( timer ) ; }
Schedules a repeating Event .
57
7
16,057
private void calculateStrategy ( final Strategy strategy , final int o1 , final int o2 ) { if ( Strategy . OFFSET == strategy ) { this . offset = o1 ; this . limit = o2 ; } else if ( Strategy . PAGES == strategy ) { this . offset = ( o1 * o2 ) - o2 ; this . limit = o2 ; } }
Determines the offset and limit based on pagination strategy .
82
13
16,058
private Integer parseIntegerFromParam ( final String value , final int defaultValue ) { try { return Integer . valueOf ( value ) ; } catch ( NumberFormatException | NullPointerException e ) { return defaultValue ; } }
Parses a parameter to an Integer defaulting to 0 upon any errors encountered .
48
17
16,059
public static String generate ( final int chars ) { final SecureRandom secureRandom = new SecureRandom ( ) ; final char [ ] buff = new char [ chars ] ; for ( int i = 0 ; i < chars ; ++ i ) { if ( i % 10 == 0 ) { secureRandom . setSeed ( secureRandom . nextLong ( ) ) ; } buff [ i ] = VALID_CHARACTERS [ secureRandom . ne...
Generates a cryptographically secure API key of the specified length .
113
13
16,060
private int [ ] parse ( String version ) { final Matcher m = Pattern . compile ( "(\\d+)\\.(\\d+)\\.(\\d+)-?(SNAPSHOT)?\\.?(\\d*)?" ) . matcher ( version ) ; if ( ! m . matches ( ) ) { throw new IllegalArgumentException ( "Malformed version string: " + version ) ; } return new int [ ] { Integer . parseInt ( m . group (...
Parses the version .
199
6
16,061
public boolean isNewerThan ( VersionComparator comparator ) { if ( this . major > comparator . getMajor ( ) ) { return true ; } else if ( this . major == comparator . getMajor ( ) && this . minor > comparator . getMinor ( ) ) { return true ; } else if ( this . major == comparator . getMajor ( ) && this . minor == compa...
Determines if the specified VersionComparator is newer than this instance .
176
15
16,062
private void initialize ( ) { createKeysIfNotExist ( ) ; if ( keyPair == null ) { try { loadKeyPair ( ) ; } catch ( IOException | NoSuchAlgorithmException | InvalidKeySpecException e ) { LOGGER . error ( "An error occurred loading key pair" ) ; LOGGER . error ( e . getMessage ( ) ) ; } } if ( secretKey == null ) { try ...
Initializes the KeyManager
142
5
16,063
private void createKeysIfNotExist ( ) { if ( ! keyPairExists ( ) ) { try { final KeyPair keyPair = generateKeyPair ( ) ; save ( keyPair ) ; } catch ( NoSuchAlgorithmException e ) { LOGGER . error ( "An error occurred generating new keypair" ) ; LOGGER . error ( e . getMessage ( ) ) ; } catch ( IOException e ) { LOGGER ...
Checks if the keys exists . If not they will be created .
239
14
16,064
public KeyPair generateKeyPair ( ) throws NoSuchAlgorithmException { LOGGER . info ( "Generating new key pair" ) ; final KeyPairGenerator keyGen = KeyPairGenerator . getInstance ( "RSA" ) ; final SecureRandom random = SecureRandom . getInstance ( "SHA1PRNG" ) ; keyGen . initialize ( 4096 , random ) ; return this . keyP...
Generates a key pair .
102
6
16,065
private File getKeyPath ( final KeyType keyType ) { return new File ( Config . getInstance ( ) . getDataDirectorty ( ) + File . separator + "keys" + File . separator + keyType . name ( ) . toLowerCase ( ) + ".key" ) ; }
Retrieves the path where the keys should be stored .
65
12
16,066
private File getKeyPath ( final Key key ) { KeyType keyType = null ; if ( key instanceof PrivateKey ) { keyType = KeyType . PRIVATE ; } else if ( key instanceof PublicKey ) { keyType = KeyType . PUBLIC ; } else if ( key instanceof SecretKey ) { keyType = KeyType . SECRET ; } return getKeyPath ( keyType ) ; }
Given the type of key this method will return the File path to that key .
87
16
16,067
public void save ( final KeyPair keyPair ) throws IOException { LOGGER . info ( "Saving key pair" ) ; final PrivateKey privateKey = keyPair . getPrivate ( ) ; final PublicKey publicKey = keyPair . getPublic ( ) ; // Store Public Key final File publicKeyFile = getKeyPath ( publicKey ) ; publicKeyFile . getParentFile ( )...
Saves a key pair .
303
6
16,068
public void save ( final SecretKey key ) throws IOException { final File keyFile = getKeyPath ( key ) ; keyFile . getParentFile ( ) . mkdirs ( ) ; // make directories if they do not exist try ( OutputStream fos = Files . newOutputStream ( keyFile . toPath ( ) ) ; ObjectOutputStream oout = new ObjectOutputStream ( fos )...
Saves a secret key .
97
6
16,069
private KeyPair loadKeyPair ( ) throws IOException , NoSuchAlgorithmException , InvalidKeySpecException { // Read Private Key final File filePrivateKey = getKeyPath ( KeyType . PRIVATE ) ; // Read Public Key final File filePublicKey = getKeyPath ( KeyType . PUBLIC ) ; byte [ ] encodedPrivateKey ; byte [ ] encodedPublic...
Loads a key pair .
319
6
16,070
private SecretKey loadSecretKey ( ) throws IOException , ClassNotFoundException { final File file = getKeyPath ( KeyType . SECRET ) ; SecretKey key ; try ( InputStream fis = Files . newInputStream ( file . toPath ( ) ) ; ObjectInputStream ois = new ObjectInputStream ( fis ) ) { key = ( SecretKey ) ois . readObject ( ) ...
Loads the secret key .
97
6
16,071
public static boolean valueOf ( String value ) { return ( value != null ) && ( value . trim ( ) . equalsIgnoreCase ( "true" ) || value . trim ( ) . equals ( "1" ) ) ; }
Determines if the specified string contains true or 1
49
11
16,072
public static byte [ ] encryptAsBytes ( final SecretKey secretKey , final String plainText ) throws Exception { final byte [ ] clean = plainText . getBytes ( ) ; // Generating IV int ivSize = 16 ; final byte [ ] iv = new byte [ ivSize ] ; final SecureRandom random = new SecureRandom ( ) ; random . nextBytes ( iv ) ; fi...
Encrypts the specified plainText using AES - 256 .
231
12
16,073
public static byte [ ] encryptAsBytes ( final String plainText ) throws Exception { final SecretKey secretKey = KeyManager . getInstance ( ) . getSecretKey ( ) ; return encryptAsBytes ( secretKey , plainText ) ; }
Encrypts the specified plainText using AES - 256 . This method uses the default secret key .
50
20
16,074
public static String encryptAsString ( final SecretKey secretKey , final String plainText ) throws Exception { return Base64 . getEncoder ( ) . encodeToString ( encryptAsBytes ( secretKey , plainText ) ) ; }
Encrypts the specified plainText using AES - 256 and returns a Base64 encoded representation of the encrypted bytes .
48
23
16,075
public static byte [ ] decryptAsBytes ( final SecretKey secretKey , final byte [ ] encryptedIvTextBytes ) throws Exception { int ivSize = 16 ; // Extract IV final byte [ ] iv = new byte [ ivSize ] ; System . arraycopy ( encryptedIvTextBytes , 0 , iv , 0 , iv . length ) ; final IvParameterSpec ivParameterSpec = new IvPa...
Decrypts the specified bytes using AES - 256 .
204
11
16,076
public static byte [ ] decryptAsBytes ( final byte [ ] encryptedIvTextBytes ) throws Exception { final SecretKey secretKey = KeyManager . getInstance ( ) . getSecretKey ( ) ; return decryptAsBytes ( secretKey , encryptedIvTextBytes ) ; }
Decrypts the specified bytes using AES - 256 . This method uses the default secret key .
56
19
16,077
private void setCurrentPage ( int page ) { if ( page >= totalPages ) { this . currentPage = totalPages ; } else if ( page <= 1 ) { this . currentPage = 1 ; } else { this . currentPage = page ; } // now work out where the sub-list should start and end startingIndex = pageSize * ( currentPage - 1 ) ; if ( startingIndex <...
Specifies a specific page to jump to .
125
9
16,078
@ SuppressWarnings ( "unchecked" ) public static < T > T getSessionAttribute ( final HttpSession session , final String key ) { if ( session != null ) { return ( T ) session . getAttribute ( key ) ; } return null ; }
Returns a session attribute as the type of object stored .
57
11
16,079
@ SuppressWarnings ( "unchecked" ) public static < T > T getRequestAttribute ( final HttpServletRequest request , final String key ) { if ( request != null ) { return ( T ) request . getAttribute ( key ) ; } return null ; }
Returns a request attribute as the type of object stored .
59
11
16,080
public static < T > T readAsObjectOf ( Class < T > clazz , String value ) { final ObjectMapper mapper = new ObjectMapper ( ) ; try { return mapper . readValue ( value , clazz ) ; } catch ( IOException e ) { LOGGER . error ( e . getMessage ( ) , e . fillInStackTrace ( ) ) ; } return null ; }
Reads in a String value and returns the object for which it represents .
87
15
16,081
public boolean validateToken ( final String token ) { try { final JwtParser jwtParser = Jwts . parser ( ) . setSigningKey ( key ) ; jwtParser . parse ( token ) ; this . subject = jwtParser . parseClaimsJws ( token ) . getBody ( ) . getSubject ( ) ; this . expiration = jwtParser . parseClaimsJws ( token ) . getBody ( ) ...
Validates a JWT by ensuring the signature matches and validates against the SecretKey and checks the expiration date .
285
23
16,082
private Date addDays ( final Date date , final int days ) { final Calendar cal = Calendar . getInstance ( ) ; cal . setTime ( date ) ; cal . add ( Calendar . DATE , days ) ; //minus number would decrement the days return cal . getTime ( ) ; }
Create a new future Date from the specified Date .
62
10
16,083
private Event linkChainIdentifier ( Event event ) { if ( event instanceof ChainableEvent ) { ChainableEvent chainableEvent = ( ChainableEvent ) event ; chainableEvent . setChainIdentifier ( this . getChainIdentifier ( ) ) ; return chainableEvent ; } return event ; }
Assigns the chain identifier for the specified event to the chain identifier value of this instance . This requires the specified event to be an instance of ChainableEvent .
64
33
16,084
public void executeUpgrades ( final List < Class < ? extends UpgradeItem > > classes ) throws UpgradeException { final Connection connection = getConnection ( qm ) ; final UpgradeMetaProcessor installedUpgrades = new UpgradeMetaProcessor ( connection ) ; DbUtil . initPlatformName ( connection ) ; // Initialize DbUtil /...
Performs the execution of upgrades in the order defined by the specified array .
495
15
16,085
private Connection getConnection ( AlpineQueryManager aqm ) { final JDOConnection jdoConnection = aqm . getPersistenceManager ( ) . getDataStoreConnection ( ) ; if ( jdoConnection != null ) { if ( jdoConnection . getNativeConnection ( ) instanceof Connection ) { return ( Connection ) jdoConnection . getNativeConnection...
This connection should never be closed .
84
7
16,086
public static boolean isValidUUID ( String uuid ) { return ! StringUtils . isEmpty ( uuid ) && UUID_PATTERN . matcher ( uuid ) . matches ( ) ; }
Determines if the specified string is a valid UUID .
45
13
16,087
private LdapUser autoProvision ( final AlpineQueryManager qm ) throws AlpineAuthenticationException { LOGGER . debug ( "Provisioning: " + username ) ; LdapUser user = null ; final LdapConnectionWrapper ldap = new LdapConnectionWrapper ( ) ; DirContext dirContext = null ; try { dirContext = ldap . createDirContext ( ) ;...
Automatically creates an LdapUser sets the value of various LDAP attributes and persists the user to the database .
418
24
16,088
private boolean validateCredentials ( ) { LOGGER . debug ( "Validating credentials for: " + username ) ; final LdapConnectionWrapper ldap = new LdapConnectionWrapper ( ) ; DirContext dirContext = null ; LdapContext ldapContext = null ; try ( AlpineQueryManager qm = new AlpineQueryManager ( ) ) { final LdapUser ldapUser...
Asserts a users credentials . Returns a boolean value indicating if assertion was successful or not .
348
19
16,089
public static PersistenceManager createPersistenceManager ( ) { if ( Config . isUnitTestsEnabled ( ) ) { pmf = ( JDOPersistenceManagerFactory ) JDOHelper . getPersistenceManagerFactory ( JdoProperties . unit ( ) , "Alpine" ) ; } if ( pmf == null ) { throw new IllegalStateException ( "Context is not initialized yet." ) ...
Creates a new JDO PersistenceManager .
99
10
16,090
public LdapContext createLdapContext ( final String userDn , final String password ) throws NamingException { LOGGER . debug ( "Creating LDAP context for: " + userDn ) ; if ( StringUtils . isEmpty ( userDn ) || StringUtils . isEmpty ( password ) ) { throw new NamingException ( "Username or password cannot be empty or n...
Asserts a users credentials . Returns an LdapContext if assertion is successful or an exception for any other reason .
375
25
16,091
public DirContext createDirContext ( ) throws NamingException { LOGGER . debug ( "Creating directory service context (DirContext)" ) ; final Hashtable < String , String > env = new Hashtable <> ( ) ; env . put ( Context . SECURITY_PRINCIPAL , BIND_USERNAME ) ; env . put ( Context . SECURITY_CREDENTIALS , BIND_PASSWORD ...
Creates a DirContext with the applications configuration settings .
207
11
16,092
public List < String > getGroups ( final DirContext dirContext , final LdapUser ldapUser ) throws NamingException { LOGGER . debug ( "Retrieving groups for: " + ldapUser . getDN ( ) ) ; final List < String > groupDns = new ArrayList <> ( ) ; final String searchFilter = variableSubstitution ( USER_GROUPS_FILTER , ldapUs...
Retrieves a list of all groups the user is a member of .
247
15
16,093
public List < String > getGroups ( final DirContext dirContext ) throws NamingException { LOGGER . debug ( "Retrieving all groups" ) ; final List < String > groupDns = new ArrayList <> ( ) ; final SearchControls sc = new SearchControls ( ) ; sc . setSearchScope ( SearchControls . SUBTREE_SCOPE ) ; final NamingEnumerati...
Retrieves a list of all the groups in the directory .
188
13
16,094
public String getAttribute ( final DirContext ctx , final String dn , final String attributeName ) throws NamingException { final Attributes attributes = ctx . getAttributes ( dn ) ; return getAttribute ( attributes , attributeName ) ; }
Retrieves an attribute by its name for the specified dn .
51
14
16,095
public String getAttribute ( final SearchResult result , final String attributeName ) throws NamingException { return getAttribute ( result . getAttributes ( ) , attributeName ) ; }
Retrieves an attribute by its name for the specified search result .
36
14
16,096
public String getAttribute ( final Attributes attributes , final String attributeName ) throws NamingException { if ( attributes == null || attributes . size ( ) == 0 ) { return null ; } else { final Attribute attribute = attributes . get ( attributeName ) ; if ( attribute != null ) { final Object o = attribute . get (...
Retrieves an attribute by its name .
95
9
16,097
private static String formatPrincipal ( final String username ) { if ( StringUtils . isNotBlank ( LDAP_AUTH_USERNAME_FMT ) ) { return String . format ( LDAP_AUTH_USERNAME_FMT , username ) ; } return username ; }
Formats the principal in username
62
6
16,098
public static String generateHash ( String emailAddress ) { if ( StringUtils . isBlank ( emailAddress ) ) { return null ; } return DigestUtils . md5Hex ( emailAddress . trim ( ) . toLowerCase ( ) ) . toLowerCase ( ) ; }
Generates a hash value from the specified email address . Returns null if emailAddress is empty or null .
61
21
16,099
public static String getGravatarUrl ( String emailAddress ) { String hash = generateHash ( emailAddress ) ; if ( hash == null ) { return "https://www.gravatar.com/avatar/00000000000000000000000000000000" + ".jpg?d=mm" ; } else { return "https://www.gravatar.com/avatar/" + hash + ".jpg?d=mm" ; } }
Generates a Gravatar URL for the specified email address . If the email address is blank or does not have a Gravatar will fallback to usingthe mystery - man image .
89
36