idx int64 0 165k | question stringlengths 73 4.15k | target stringlengths 5 918 | len_question int64 21 890 | len_target int64 3 255 |
|---|---|---|---|---|
17,100 | public static Envelope scaleToWidth ( Envelope original , double newWidth ) { double width = original . getWidth ( ) ; double factor = newWidth / width ; double newHeight = original . getHeight ( ) * factor ; return new Envelope ( original . getMinX ( ) , original . getMinX ( ) + newWidth , original . getMinY ( ) , ori... | Scale an envelope to have a given width . | 96 | 9 |
17,101 | public static int getDayOfYear ( Calendar cal , int type ) { int jday = cal . get ( Calendar . DAY_OF_YEAR ) ; int mo = cal . get ( java . util . Calendar . MONTH ) + 1 ; if ( type == CALENDAR_YEAR ) { return jday ; } else if ( type == SOLAR_YEAR ) { int day = cal . get ( Calendar . DAY_OF_MONTH ) ; return ( mo == 12 &... | Get the Day of the year in WATER SOLAR or CALENDAR year . | 196 | 17 |
17,102 | public static double deltaHours ( int calUnit , int increments ) { if ( calUnit == Calendar . DATE ) { return 24 * increments ; } else if ( calUnit == Calendar . HOUR ) { return increments ; } else if ( calUnit == Calendar . MINUTE ) { return increments / 60 ; } else if ( calUnit == Calendar . SECOND ) { return increme... | This used to be deltim in MMS . | 89 | 10 |
17,103 | protected ValidationMessage < Origin > reportError ( Origin origin , String messageKey , Object ... params ) { return reportMessage ( Severity . ERROR , origin , messageKey , params ) ; } | Creates an error validation message for the feature and adds it to the validation result . | 40 | 17 |
17,104 | protected ValidationMessage < Origin > reportFeatureError ( Origin origin , String messageKey , Feature feature , Object ... params ) { ValidationMessage < Origin > message = reportMessage ( Severity . ERROR , origin , messageKey , params ) ; appendLocusTadAndGeneIDToMessage ( feature , message ) ; return message ; } | Creates an error validation message for the feature and adds it to the validation result . If there are locus_tag or gene qualifiers the values of these will be added to the message as a curator comment . | 70 | 42 |
17,105 | public static void appendLocusTadAndGeneIDToMessage ( Feature feature , ValidationMessage < Origin > message ) { if ( SequenceEntryUtils . isQualifierAvailable ( Qualifier . LOCUS_TAG_QUALIFIER_NAME , feature ) ) { Qualifier locusTag = SequenceEntryUtils . getQualifier ( Qualifier . LOCUS_TAG_QUALIFIER_NAME , feature )... | If a feature had locus_tag or gene qualifiers - appends the value of these to the message as a curator comment . Useful for some submitters who want more of a handle on the origin than just a line number . | 223 | 46 |
17,106 | protected ValidationMessage < Origin > reportWarning ( Origin origin , String messageKey , Object ... params ) { return reportMessage ( Severity . WARNING , origin , messageKey , params ) ; } | Creates a warning validation message for the feature and adds it to the validation result . | 40 | 17 |
17,107 | protected ValidationMessage < Origin > reportMessage ( Severity severity , Origin origin , String messageKey , Object ... params ) { ValidationMessage < Origin > message = EntryValidations . createMessage ( origin , severity , messageKey , params ) ; message . getMessage ( ) ; // System.out.println("message = " + messa... | Creates a validation message for the feature and adds it to the validation result . | 85 | 16 |
17,108 | private boolean isAlone ( Geometry geometryN ) { Coordinate [ ] coordinates = geometryN . getCoordinates ( ) ; if ( coordinates . length > 1 ) { Coordinate first = coordinates [ 0 ] ; Coordinate last = coordinates [ coordinates . length - 1 ] ; for ( SimpleFeature line : linesList ) { Geometry lineGeom = ( Geometry ) l... | Checks if the given geometry is connected to any other line . | 309 | 13 |
17,109 | public static void defaultSmoothShapefile ( String shapePath , String outPath ) throws Exception { PrintStreamProgressMonitor pm = new PrintStreamProgressMonitor ( System . out , System . err ) ; SimpleFeatureCollection initialFC = OmsShapefileFeatureReader . readShapefile ( shapePath ) ; OmsLineSmootherMcMaster smooth... | An utility method to use the module with default values and shapefiles . | 184 | 14 |
17,110 | @ Override public double magnitudeSqr ( Object pt ) { double sum = 0.0 ; double [ ] coords = coords ( pt ) ; for ( int i = 0 ; i < dimensions ; i ++ ) { double c = coords [ i ] ; sum += c * c ; } return sum ; } | space point operations | 68 | 3 |
17,111 | public static byte [ ] generateSecretKey ( ) { final byte [ ] k = new byte [ KEY_LEN ] ; final SecureRandom random = new SecureRandom ( ) ; random . nextBytes ( k ) ; return k ; } | Generates a 32 - byte secret key . | 49 | 9 |
17,112 | private static void initialize ( ) { for ( int i = 0 ; i < 256 ; ++ i ) { long crc = i ; for ( int j = 8 ; j > 0 ; j -- ) { if ( ( crc & 1 ) == 1 ) crc = ( crc >>> 1 ) ^ polynomial ; else crc >>>= 1 ; } values [ i ] = crc ; } init_done = true ; } | Calculates a CRC value for a byte to be used by CRC calculation functions . | 92 | 17 |
17,113 | public static long calculateCRC32 ( byte [ ] buffer , int offset , int length ) { if ( ! init_done ) { initialize ( ) ; } for ( int i = offset ; i < offset + length ; i ++ ) { long tmp1 = ( crc >>> 8 ) & 0x00FFFFFF L ; long tmp2 = values [ ( int ) ( ( crc ^ Character . toUpperCase ( ( char ) buffer [ i ] ) ) & 0xff ) ]... | Calculates the CRC - 32 of a block of data all at once | 133 | 15 |
17,114 | private synchronized URLClassLoader getClassLoader ( ) { if ( modelClassLoader == null ) { List < File > jars = res . filterFiles ( "jar" ) ; // jars as defined in List < File > cli_jars = getExtraResources ( ) ; // cli extra jars List < File > dirs = res . filterDirectories ( ) ; // testing List < URL > urls = new Arr... | get the URL class loader for all the resources ( just for jar files | 506 | 14 |
17,115 | public static double getDistanceBetween ( IHMConnection connection , Coordinate p1 , Coordinate p2 , int srid ) throws Exception { if ( srid < 0 ) { srid = 4326 ; } GeometryFactory gf = new GeometryFactory ( ) ; LineString lineString = gf . createLineString ( new Coordinate [ ] { p1 , p2 } ) ; String sql = "select Geod... | Calculates the GeodesicLength between to points . | 189 | 12 |
17,116 | private boolean moveToNextTriggerpoint ( RandomIter triggerIter , RandomIter flowIter , int [ ] flowDirColRow ) { double tmpFlowValue = flowIter . getSampleDouble ( flowDirColRow [ 0 ] , flowDirColRow [ 1 ] , 0 ) ; if ( tmpFlowValue == 10 ) { return false ; } if ( ! ModelsEngine . go_downstream ( flowDirColRow , tmpFlo... | Moves the flowDirColRow variable to the next trigger point . | 278 | 14 |
17,117 | public static void memclr ( byte [ ] array , int offset , int length ) { for ( int i = 0 ; i < length ; ++ i , ++ offset ) array [ offset ] = 0 ; } | Fill the given array with zeros . | 44 | 8 |
17,118 | public static byte [ ] zero_pad ( byte [ ] original , int block_size ) { if ( ( original . length % block_size ) == 0 ) { return original ; } byte [ ] result = new byte [ round_up ( original . length , block_size ) ] ; memcpy ( result , 0 , original , 0 , original . length ) ; // Unnecessary - jvm sets bytes to 0. // m... | Return a new array equal to original except zero - padded to an integral mulitple of blocks . If the original is already an integral multiple of blocks just return it . | 112 | 34 |
17,119 | public static boolean isSupportedVectorExtension ( String name ) { for ( String ext : supportedVectors ) { if ( name . toLowerCase ( ) . endsWith ( ext ) ) { return true ; } } return false ; } | Checks a given name of a file if it is a supported vector extension . | 50 | 16 |
17,120 | public static boolean isSupportedRasterExtension ( String name ) { for ( String ext : supportedRasters ) { if ( name . toLowerCase ( ) . endsWith ( ext ) ) { return true ; } } return false ; } | Checks a given name of a file if it is a supported raster extension . | 50 | 17 |
17,121 | public static GridCoverage2D readRaster ( String path ) throws Exception { OmsRasterReader reader = new OmsRasterReader ( ) ; reader . file = path ; reader . process ( ) ; GridCoverage2D geodata = reader . outRaster ; return geodata ; } | Utility method to quickly read a grid in default mode . | 66 | 12 |
17,122 | private void swap ( int i , int j ) { double [ ] temp = data [ i ] ; data [ i ] = data [ j ] ; data [ j ] = temp ; } | swap rows i and j | 39 | 6 |
17,123 | public Matrix transpose ( ) { Matrix A = new Matrix ( N , M ) ; for ( int i = 0 ; i < M ; i ++ ) { for ( int j = 0 ; j < N ; j ++ ) { A . data [ j ] [ i ] = data [ i ] [ j ] ; } } return A ; } | create and return the transpose of the invoking matrix | 72 | 10 |
17,124 | public Matrix solve ( Matrix rhs ) { if ( M != N || rhs . M != N || rhs . N != 1 ) { throw new RuntimeException ( "Illegal matrix dimensions." ) ; } // create copies of the data Matrix A = new Matrix ( this ) ; Matrix b = new Matrix ( rhs ) ; // Gaussian elimination with partial pivoting for ( int i = 0 ; i < N ; i ++ ... | return x = A^ - 1 b assuming A is square and has full rank | 488 | 16 |
17,125 | public void print ( ) { for ( int i = 0 ; i < M ; i ++ ) { for ( int j = 0 ; j < N ; j ++ ) { System . out . printf ( "%9.4f " , data [ i ] [ j ] ) ; } System . out . println ( ) ; } } | print matrix to standard output | 69 | 5 |
17,126 | public void createTables ( boolean makeIndexes ) throws Exception { database . executeInsertUpdateDeleteSql ( "DROP TABLE IF EXISTS " + TABLE_TILES ) ; database . executeInsertUpdateDeleteSql ( "DROP TABLE IF EXISTS " + TABLE_METADATA ) ; database . executeInsertUpdateDeleteSql ( CREATE_TILES ) ; database . executeInse... | Create the mbtiles tables in the db . | 115 | 10 |
17,127 | public void fillMetadata ( float n , float s , float w , float e , String name , String format , int minZoom , int maxZoom ) throws Exception { // type = baselayer // version = 1.1 // descritpion = name String query = toMetadataQuery ( "name" , name ) ; database . executeInsertUpdateDeleteSql ( query ) ; query = toMeta... | Populate the metadata table . | 310 | 6 |
17,128 | public synchronized void addTile ( int x , int y , int z , byte [ ] imageBytes ) throws Exception { database . execOnConnection ( connection -> { try ( IHMPreparedStatement pstmt = connection . prepareStatement ( insertTileSql ) ; ) { pstmt . setInt ( 1 , z ) ; pstmt . setInt ( 2 , x ) ; pstmt . setInt ( 3 , y ) ; pstm... | Add a single tile . | 123 | 5 |
17,129 | public synchronized void addTilesInBatch ( List < Tile > tilesList ) throws Exception { database . execOnConnection ( connection -> { boolean autoCommit = connection . getAutoCommit ( ) ; connection . setAutoCommit ( false ) ; try ( IHMPreparedStatement pstmt = connection . prepareStatement ( insertTileSql ) ; ) { for ... | Add a list of tiles in batch mode . | 187 | 9 |
17,130 | public byte [ ] getTile ( int tx , int tyOsm , int zoom ) throws Exception { int ty = tyOsm ; if ( tileRowType . equals ( "tms" ) ) { int [ ] tmsTileXY = MercatorUtils . osmTile2TmsTile ( tx , tyOsm , zoom ) ; ty = tmsTileXY [ 1 ] ; } int _ty = ty ; return database . execOnConnection ( connection -> { try ( IHMPrepared... | Get a Tile s image bytes from the database . | 203 | 10 |
17,131 | public Envelope getBounds ( ) throws Exception { checkMetadata ( ) ; String boundsWSEN = metadataMap . get ( "bounds" ) ; String [ ] split = boundsWSEN . split ( "," ) ; double w = Double . parseDouble ( split [ 0 ] ) ; double s = Double . parseDouble ( split [ 1 ] ) ; double e = Double . parseDouble ( split [ 2 ] ) ; ... | Get the db envelope . | 121 | 5 |
17,132 | public int [ ] getBoundsInTileIndex ( int zoomlevel ) throws Exception { String sql = "select min(tile_column), max(tile_column), min(tile_row), max(tile_row) from tiles where zoom_level=" + zoomlevel ; return database . execOnConnection ( connection -> { try ( IHMStatement statement = connection . createStatement ( ) ... | Get the bounds of a zoomlevel in tile indexes . | 189 | 11 |
17,133 | public void out2in ( Object from , String from_out , Object ... tos ) { for ( Object co : tos ) { out2in ( from , from_out , co , from_out ) ; } } | Connects field1 of cmd1 with the same named fields in cmds | 48 | 15 |
17,134 | public void in2in ( String in , Object to , String to_in ) { controller . mapIn ( in , to , to_in ) ; } | Maps a Compound Input field to a internal simple input field . | 33 | 13 |
17,135 | public void in2in ( String in , Object ... to ) { for ( Object cmd : to ) { in2in ( in , cmd , in ) ; } } | Maps a compound input to an internal simple input field . Both fields have the same name . | 35 | 18 |
17,136 | public void field2in ( Object o , String field , Object to , String to_in ) { controller . mapInField ( o , field , to , to_in ) ; } | Maps a object s field to an In field | 39 | 9 |
17,137 | public void field2in ( Object o , String field , Object to ) { field = field . trim ( ) ; if ( field . indexOf ( ' ' ) > 0 ) { // maybe multiple field names given String [ ] fields = field . split ( "\\s+" ) ; for ( String f : fields ) { field2in ( o , f , to , f ) ; } } else { field2in ( o , field , to , field ) ; } } | Maps an object s field to a component s In field with the same name | 100 | 15 |
17,138 | public void out2field ( Object from , String from_out , Object o , String field ) { controller . mapOutField ( from , from_out , o , field ) ; } | Maps a component s Out field to an object field . | 39 | 11 |
17,139 | public void out2field ( Object from , String from_out , Object o ) { out2field ( from , from_out , o , from_out ) ; } | Maps a component Out field to an object s field . Both field have the same name . | 36 | 18 |
17,140 | public void out2out ( String out , Object to , String to_out ) { controller . mapOut ( out , to , to_out ) ; } | Maps a Compound Output field to a internal simple output field . | 33 | 13 |
17,141 | @ Deprecated public void connect ( Object from , String from_out , Object to , String to_in ) { controller . connect ( from , from_out , to , to_in ) ; } | deprecated methods starting here . | 42 | 6 |
17,142 | protected void reportError ( ValidationResult result , String messageKey , Object ... params ) { reportMessage ( result , Severity . ERROR , messageKey , params ) ; } | Creates an error validation message for the sequence and adds it to the validation result . | 36 | 17 |
17,143 | protected void reportWarning ( ValidationResult result , String messageKey , Object ... params ) { reportMessage ( result , Severity . WARNING , messageKey , params ) ; } | Creates a warning validation message for the sequence and adds it to the validation result . | 36 | 17 |
17,144 | protected void reportMessage ( ValidationResult result , Severity severity , String messageKey , Object ... params ) { result . append ( EntryValidations . createMessage ( origin , severity , messageKey , params ) ) ; } | Creates a validation message for the sequence and adds it to the validation result . | 46 | 16 |
17,145 | private void calcInsolation ( double lambda , WritableRaster demWR , WritableRaster gradientWR , WritableRaster insolationWR , int day , double dx ) { // calculating the day angle // double dayang = 2 * Math.PI * (day - 1) / 365.0; double dayangb = ( 360 / 365.25 ) * ( day - 79.436 ) ; dayangb = Math . toRadians ( daya... | Evaluate the radiation . | 436 | 6 |
17,146 | public static boolean isCrsValid ( CoordinateReferenceSystem crs ) { if ( crs instanceof AbstractSingleCRS ) { AbstractSingleCRS aCrs = ( AbstractSingleCRS ) crs ; Datum datum = aCrs . getDatum ( ) ; ReferenceIdentifier name = datum . getName ( ) ; String code = name . getCode ( ) ; if ( code . equalsIgnoreCase ( "Unkn... | Checks if a crs is valid i . e . if it is not a wildcard default one . | 107 | 22 |
17,147 | @ SuppressWarnings ( "nls" ) public static void writeProjectionFile ( String filePath , String extention , CoordinateReferenceSystem crs ) throws IOException { /* * fill a prj file */ String prjPath = null ; if ( extention != null && filePath . toLowerCase ( ) . endsWith ( "." + extention ) ) { int dotLoc = filePath . ... | Fill the prj file with the actual map projection . | 211 | 11 |
17,148 | public static void reproject ( CoordinateReferenceSystem from , CoordinateReferenceSystem to , Object [ ] geometries ) throws Exception { MathTransform mathTransform = CRS . findMathTransform ( from , to ) ; for ( int i = 0 ; i < geometries . length ; i ++ ) { geometries [ i ] = JTS . transform ( ( Geometry ) geometrie... | Reproject a set of geometries | 93 | 9 |
17,149 | public static void reproject ( CoordinateReferenceSystem from , CoordinateReferenceSystem to , Coordinate [ ] coordinates ) throws Exception { MathTransform mathTransform = CRS . findMathTransform ( from , to ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { coordinates [ i ] = JTS . transform ( coordinates [ i... | Reproject a set of coordinates . | 87 | 8 |
17,150 | public static double getMetersAsWGS84 ( double meters , Coordinate c ) { GeodeticCalculator gc = new GeodeticCalculator ( DefaultGeographicCRS . WGS84 ) ; gc . setStartingGeographicPoint ( c . x , c . y ) ; gc . setDirection ( 90 , meters ) ; Point2D destinationGeographicPoint = gc . getDestinationGeographicPoint ( ) ;... | Converts meters to degrees based on a given coordinate in 90 degrees direction . | 123 | 15 |
17,151 | private void createHoughPixels ( double [ ] [ ] [ ] houghValues , byte houghPixels [ ] ) { double d = - 1D ; for ( int j = 0 ; j < height ; j ++ ) { for ( int k = 0 ; k < width ; k ++ ) { if ( houghValues [ k ] [ j ] [ 0 ] > d ) { d = houghValues [ k ] [ j ] [ 0 ] ; } } } for ( int l = 0 ; l < height ; l ++ ) { for ( i... | Convert Values in Hough Space to an 8 - Bit Image Space . | 174 | 15 |
17,152 | public void drawCircles ( double [ ] [ ] [ ] houghValues , byte [ ] circlespixels ) { // Copy original input pixels into output // circle location display image and // combine with saturation at 100 int roiaddr = 0 ; for ( int y = offy ; y < offy + height ; y ++ ) { for ( int x = offx ; x < offx + width ; x ++ ) { // C... | Draw the circles found in the original image . | 765 | 9 |
17,153 | public String getSequence ( Long beginPosition , Long endPosition ) { byte [ ] sequenceByte = getSequenceByte ( beginPosition , endPosition ) ; if ( sequenceByte != null ) return new String ( sequenceByte ) ; return null ; } | Returns a subsequence string or null if the location is not valid . | 52 | 14 |
17,154 | private void set ( Matrix m ) { this . nRows = this . nCols = Math . min ( m . nRows , m . nCols ) ; this . values = m . values ; } | Set this square matrix from another matrix . Note that this matrix will reference the values of the argument matrix . If the values are not square only the upper left square is used . | 46 | 35 |
17,155 | protected void set ( double values [ ] [ ] ) { super . set ( values ) ; nRows = nCols = Math . min ( nRows , nCols ) ; } | Set this square matrix from a 2 - d array of values . If the values are not square only the upper left square is used . | 41 | 27 |
17,156 | public static void printMatrixData ( double [ ] [ ] matrix ) { int cols = matrix [ 0 ] . length ; int rows = matrix . length ; for ( int r = 0 ; r < rows ; r ++ ) { for ( int c = 0 ; c < cols ; c ++ ) { printer . print ( matrix [ r ] [ c ] ) ; printer . print ( separator ) ; } printer . println ( ) ; } } | Print data from a matrix . | 94 | 6 |
17,157 | public static String envelope2WKT ( org . locationtech . jts . geom . Envelope env ) { GeometryFactory gf = GeometryUtilities . gf ( ) ; Geometry geometry = gf . toGeometry ( env ) ; return geometry . toText ( ) ; } | Print the envelope as WKT . | 64 | 7 |
17,158 | public int read ( ) throws IOException { int b = 0 ; // Byte to be read is already in out buffer, simply returning it if ( fOffset < fLength ) { return fData [ fOffset ++ ] & 0xff ; } /* * End of the stream is reached. * I also believe that in certain cases fOffset can point to the * position after the end of stream, f... | Reads next byte from this stream . This byte is either being read from underlying InputStream or taken from the internal buffer in case it was already read at some point before . | 287 | 35 |
17,159 | public void close ( ) throws IOException { if ( fInputStream != null ) { fInputStream . close ( ) ; fInputStream = null ; fData = null ; } } | Closes underlying byte stream . | 39 | 6 |
17,160 | public String getTranslation ( ) { if ( codons == null ) { return "" ; } StringBuilder translation = new StringBuilder ( ) ; for ( Codon codon : codons ) { translation . append ( codon . getAminoAcid ( ) ) ; } return translation . toString ( ) ; } | Returns the translation including stop codons and trailing bases . | 67 | 11 |
17,161 | public String getConceptualTranslation ( ) { if ( codons == null ) { return "" ; } StringBuilder translation = new StringBuilder ( ) ; for ( int i = 0 ; i < conceptualTranslationCodons ; ++ i ) { Codon codon = codons . get ( i ) ; translation . append ( codon . getAminoAcid ( ) ) ; } return translation . toString ( ) ;... | Returns the translation excluding stop codons and trailing bases . | 90 | 11 |
17,162 | public static double [ ] gaussianSmooth ( double [ ] values , int kernelRadius ) throws Exception { int size = values . length ; double [ ] newValues = new double [ values . length ] ; double [ ] kernelData2D = makeGaussianKernel ( kernelRadius ) ; for ( int i = 0 ; i < kernelRadius ; i ++ ) { newValues [ i ] = values ... | Smooth an array of values with a gaussian blur . | 264 | 12 |
17,163 | public static double [ ] averageSmooth ( double [ ] values , int lookAhead ) throws Exception { int size = values . length ; double [ ] newValues = new double [ values . length ] ; for ( int i = 0 ; i < lookAhead ; i ++ ) { newValues [ i ] = values [ i ] ; } for ( int i = lookAhead ; i < size - lookAhead ; i ++ ) { dou... | Smooth an array of values with an averaging moving window . | 205 | 12 |
17,164 | public Coordinate wgs84ToEnu ( Coordinate cLL ) { checkZ ( cLL ) ; Coordinate cEcef = wgs84ToEcef ( cLL ) ; Coordinate enu = ecefToEnu ( cEcef ) ; return enu ; } | Converts the wgs84 coordinate to ENU . | 65 | 11 |
17,165 | public Coordinate enuToWgs84 ( Coordinate enu ) { checkZ ( enu ) ; Coordinate cEcef = enuToEcef ( enu ) ; Coordinate wgs84 = ecefToWgs84 ( cEcef ) ; return wgs84 ; } | Converts the ENU coordinate to wgs84 . | 67 | 11 |
17,166 | public void convertGeometryFromEnuToWgs84 ( Geometry geometryEnu ) { Coordinate [ ] coordinates = geometryEnu . getCoordinates ( ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { Coordinate wgs84 = enuToWgs84 ( coordinates [ i ] ) ; coordinates [ i ] . x = wgs84 . x ; coordinates [ i ] . y = wgs84 . y ; coordin... | Converts a geometry from ENU to WGS . | 114 | 11 |
17,167 | public void convertGeometryFromWgsToEnu ( Geometry geometryWgs ) { Coordinate [ ] coordinates = geometryWgs . getCoordinates ( ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { Coordinate enu = wgs84ToEnu ( coordinates [ i ] ) ; coordinates [ i ] . x = enu . x ; coordinates [ i ] . y = enu . y ; coordinates [ i... | Converts a geometry from WGS to ENU . | 109 | 11 |
17,168 | public Envelope convertEnvelopeFromWgsToEnu ( Envelope envelopeWgs ) { Polygon polygonEnu = GeometryUtilities . createPolygonFromEnvelope ( envelopeWgs ) ; convertGeometryFromWgsToEnu ( polygonEnu ) ; Envelope envelopeEnu = polygonEnu . getEnvelopeInternal ( ) ; return envelopeEnu ; } | Converts an envelope from WGS to ENU . | 90 | 11 |
17,169 | public synchronized Position goTo ( Double lon , Double lat , Double elev , Double azimuth , boolean animate ) { View view = getWwd ( ) . getView ( ) ; view . stopAnimations ( ) ; view . stopMovement ( ) ; Position eyePosition ; if ( lon == null || lat == null ) { Position currentEyePosition = wwd . getView ( ) . getCu... | Move to a given location . | 314 | 6 |
17,170 | public void goTo ( Sector sector , boolean animate ) { View view = getWwd ( ) . getView ( ) ; view . stopAnimations ( ) ; view . stopMovement ( ) ; if ( sector == null ) { return ; } // Create a bounding box for the specified sector in order to estimate // its size in model coordinates. Box extent = Sector . computeBou... | Move to see a given sector . | 358 | 7 |
17,171 | public void setFlatGlobe ( boolean doMercator ) { EarthFlat globe = new EarthFlat ( ) ; globe . setElevationModel ( new ZeroElevationModel ( ) ) ; wwd . getModel ( ) . setGlobe ( globe ) ; wwd . getView ( ) . stopMovement ( ) ; GeographicProjection projection ; if ( doMercator ) { projection = new ProjectionMercator ( ... | Set the globe as flat . | 128 | 6 |
17,172 | public void setSphereGlobe ( ) { Earth globe = new Earth ( ) ; wwd . getModel ( ) . setGlobe ( globe ) ; wwd . getView ( ) . stopMovement ( ) ; wwd . redraw ( ) ; } | Set the globe as sphere . | 55 | 6 |
17,173 | public void setFlatSphereGlobe ( ) { Earth globe = new Earth ( ) ; globe . setElevationModel ( new ZeroElevationModel ( ) ) ; wwd . getModel ( ) . setGlobe ( globe ) ; wwd . getView ( ) . stopMovement ( ) ; wwd . redraw ( ) ; } | Set the globe as flat sphere . | 75 | 7 |
17,174 | public List < Message > getFilteredList ( EMessageType messageType , Long fromTsMillis , Long toTsMillis , long limit ) throws Exception { String tableName = TABLE_MESSAGES ; String sql = "select " + getQueryFieldsString ( ) + " from " + tableName ; List < String > wheresList = new ArrayList <> ( ) ; if ( messageType !... | Get the list of messages filtered . | 403 | 7 |
17,175 | @ Override public boolean accept ( File file ) { String name = file . getName ( ) ; if ( FilenameUtils . wildcardMatch ( name , wildcards , caseSensitivity ) ) { return true ; } return false ; } | Checks to see if the filename matches one of the wildcards . | 51 | 14 |
17,176 | public SimpleFeature convertDwgAttribute ( String typeName , String layerName , DwgAttrib attribute , int id ) { Point2D pto = attribute . getInsertionPoint ( ) ; Coordinate coord = new Coordinate ( pto . getX ( ) , pto . getY ( ) , attribute . getElevation ( ) ) ; String textString = attribute . getText ( ) ; return c... | Builds a point feature from a dwg attribute . | 108 | 11 |
17,177 | public SimpleFeature convertDwgPolyline2D ( String typeName , String layerName , DwgPolyline2D polyline2d , int id ) { Point2D [ ] ptos = polyline2d . getPts ( ) ; CoordinateList coordList = new CoordinateList ( ) ; if ( ptos != null ) { for ( int j = 0 ; j < ptos . length ; j ++ ) { Coordinate coord = new Coordinate (... | Builds a line feature from a dwg polyline 2D . | 292 | 14 |
17,178 | public SimpleFeature convertDwgPoint ( String typeName , String layerName , DwgPoint point , int id ) { double [ ] p = point . getPoint ( ) ; Point2D pto = new Point2D . Double ( p [ 0 ] , p [ 1 ] ) ; CoordinateList coordList = new CoordinateList ( ) ; Coordinate coord = new Coordinate ( pto . getX ( ) , pto . getY ( )... | Builds a point feature from a dwg point . | 261 | 11 |
17,179 | public SimpleFeature convertDwgLine ( String typeName , String layerName , DwgLine line , int id ) { double [ ] p1 = line . getP1 ( ) ; double [ ] p2 = line . getP2 ( ) ; Point2D [ ] ptos = new Point2D [ ] { new Point2D . Double ( p1 [ 0 ] , p1 [ 1 ] ) , new Point2D . Double ( p2 [ 0 ] , p2 [ 1 ] ) } ; CoordinateList c... | Builds a line feature from a dwg line . | 336 | 11 |
17,180 | public SimpleFeature convertDwgCircle ( String typeName , String layerName , DwgCircle circle , int id ) { double [ ] center = circle . getCenter ( ) ; double radius = circle . getRadius ( ) ; Point2D [ ] ptos = GisModelCurveCalculator . calculateGisModelCircle ( new Point2D . Double ( center [ 0 ] , center [ 1 ] ) , r... | Builds a polygon feature from a dwg circle . | 453 | 12 |
17,181 | public SimpleFeature convertDwgSolid ( String typeName , String layerName , DwgSolid solid , int id ) { double [ ] p1 = solid . getCorner1 ( ) ; double [ ] p2 = solid . getCorner2 ( ) ; double [ ] p3 = solid . getCorner3 ( ) ; double [ ] p4 = solid . getCorner4 ( ) ; Point2D [ ] ptos = new Point2D [ ] { new Point2D . D... | Builds a polygon feature from a dwg solid . | 431 | 12 |
17,182 | public SimpleFeature convertDwgArc ( String typeName , String layerName , DwgArc arc , int id ) { double [ ] c = arc . getCenter ( ) ; Point2D center = new Point2D . Double ( c [ 0 ] , c [ 1 ] ) ; double radius = ( arc ) . getRadius ( ) ; double initAngle = Math . toDegrees ( ( arc ) . getInitAngle ( ) ) ; double endAn... | Builds a line feature from a dwg arc . | 384 | 11 |
17,183 | public static double norm_vec ( double x , double y , double z ) { return Math . sqrt ( x * x + y * y + z * z ) ; } | Normalized Vector . | 37 | 4 |
17,184 | public static double lag1 ( double [ ] vals ) { double mean = mean ( vals ) ; int size = vals . length ; double r1 ; double q = 0 ; double v = ( vals [ 0 ] - mean ) * ( vals [ 0 ] - mean ) ; for ( int i = 1 ; i < size ; i ++ ) { double delta0 = ( vals [ i - 1 ] - mean ) ; double delta1 = ( vals [ i ] - mean ) ; q += ( ... | Returns the lag - 1 autocorrelation of a dataset ; | 156 | 13 |
17,185 | public static double round ( double val , int places ) { long factor = ( long ) Math . pow ( 10 , places ) ; // Shift the decimal the correct number of places // to the right. val = val * factor ; // Round to the nearest integer. long tmp = Math . round ( val ) ; // Shift the decimal the correct number of places // bac... | Round a double value to a specified number of decimal places . | 88 | 12 |
17,186 | public static double random ( double min , double max ) { assert max > min ; return min + Math . random ( ) * ( max - min ) ; } | Generate a random number in a range . | 33 | 9 |
17,187 | private boolean checkStructure ( ) { File ds ; ds = new File ( mapsetPath + File . separator + GrassLegacyConstans . CATS + File . separator ) ; if ( ! ds . exists ( ) ) if ( ! ds . mkdir ( ) ) return false ; ds = new File ( mapsetPath + File . separator + GrassLegacyConstans . CELL + File . separator ) ; if ( ! ds . e... | check if the needed folders are there ( they could be missing if the mapset has just been created and this is the first file that gets into it | 458 | 30 |
17,188 | private boolean createEmptyHeader ( String filePath , int rows ) { try { RandomAccessFile theCreatedFile = new RandomAccessFile ( filePath , "rw" ) ; rowaddresses = new long [ rows + 1 ] ; // the size of a long theCreatedFile . write ( 4 ) ; // write the addresses of the row begins. Since we don't know how // much // t... | creates the space for the header of the rasterfile filling the spaces with zeroes . After the compression the values will be rewritten | 182 | 28 |
17,189 | private void createCellhd ( int chproj , int chzone , double chn , double chs , double che , double chw , int chcols , int chrows , double chnsres , double chewres , int chformat , int chcompressed ) throws Exception { StringBuffer data = new StringBuffer ( 512 ) ; data . append ( "proj: " + chproj + "\n" ) . append ( ... | changes the cellhd file inserting the new values obtained from the environment | 339 | 13 |
17,190 | public boolean compressAndWriteObj ( RandomAccessFile theCreatedFile , RandomAccessFile theCreatedNullFile , Object dataObject ) throws RasterWritingFailureException { if ( dataObject instanceof double [ ] [ ] ) { compressAndWrite ( theCreatedFile , theCreatedNullFile , ( double [ ] [ ] ) dataObject ) ; } else { throw ... | Passing the object after defining the type of data that will be written | 91 | 14 |
17,191 | public String getStyle ( StyleType type , Color color , String colorName , String layerName ) { throw new UnsupportedOperationException ( ) ; } | Generates a style from a template using the provided substitutions . | 31 | 13 |
17,192 | protected Reader toReader ( Object input ) throws IOException { if ( input instanceof Reader ) { return ( Reader ) input ; } if ( input instanceof InputStream ) { return new InputStreamReader ( ( InputStream ) input ) ; } if ( input instanceof String ) { return new StringReader ( ( String ) input ) ; } if ( input insta... | Turns input into a Reader . | 141 | 7 |
17,193 | public static boolean supportsNative ( ) { if ( ! testedLibLoading ) { LiblasJNALibrary wrapper = LiblasWrapper . getWrapper ( ) ; if ( wrapper != null ) { isNativeLibAvailable = true ; } testedLibLoading = true ; } return isNativeLibAvailable ; } | Checks of nativ libs are available . | 64 | 10 |
17,194 | public static ALasReader getReader ( File lasFile , CoordinateReferenceSystem crs ) throws Exception { if ( supportsNative ( ) ) { return new LiblasReader ( lasFile , crs ) ; } else { return new LasReaderBuffered ( lasFile , crs ) ; } } | Get a las reader . | 62 | 5 |
17,195 | public static ALasWriter getWriter ( File lasFile , CoordinateReferenceSystem crs ) throws Exception { if ( supportsNative ( ) ) { return new LiblasWriter ( lasFile , crs ) ; } else { return new LasWriterBuffered ( lasFile , crs ) ; } } | Get a las writer . | 62 | 5 |
17,196 | public void setRoot ( DbLevel v ) { DbLevel oldRoot = v ; root = v ; fireTreeStructureChanged ( oldRoot ) ; } | Sets the root to a given variable . | 34 | 9 |
17,197 | public void onError ( Exception e ) { e . printStackTrace ( ) ; String localizedMessage = e . getLocalizedMessage ( ) ; if ( localizedMessage == null ) { localizedMessage = e . getMessage ( ) ; } if ( localizedMessage == null || localizedMessage . trim ( ) . length ( ) == 0 ) { localizedMessage = "An undefined error wa... | Called if an error occurrs . Can be overridden . SHows dialog by default . | 177 | 19 |
17,198 | public static boolean tcaMax ( FlowNode flowNode , RandomIter tcaIter , RandomIter hacklengthIter , double maxTca , double maxDistance ) { List < FlowNode > enteringNodes = flowNode . getEnteringNodes ( ) ; for ( Node node : enteringNodes ) { double tca = node . getValueFromMap ( tcaIter ) ; if ( tca >= maxTca ) { if (... | Compare two value of tca and distance . | 142 | 9 |
17,199 | public static boolean isCircularBoundary ( CompoundLocation < Location > location , long sequenceLength ) { if ( location . getLocations ( ) . size ( ) == 1 ) { return false ; // cant be if there is only 1 location element } boolean lastLocation = false ; List < Location > locationList = location . getLocations ( ) ; f... | Checks to see if a feature s location spans a circular boundary - assumes the genome the feature is coming from is circular . | 157 | 25 |
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