Datasets:
Download metadata/protocol_summary.json from Kimokcheon/FAME_benchmark: direct link, hf CLI and curl.
- Browser
- Download file 11.7 kB
-
https://huggingface.co/datasets/Kimokcheon/FAME_benchmark/resolve/main/metadata/protocol_summary.json
- Command line
-
hf download hf://datasets/Kimokcheon/FAME_benchmark/metadata/protocol_summary.json
-
curl -L -o protocol_summary.json https://huggingface.co/datasets/Kimokcheon/FAME_benchmark/resolve/main/metadata/protocol_summary.json
11.7 kB
| { | |
| "summary": { | |
| "zero_shot": { | |
| "num_tasks": 21, | |
| "support_examples_per_task": 0, | |
| "query_file": "FAME_benchmark/episodes/zero_shot/<task>/test.jsonl" | |
| }, | |
| "few_shot": { | |
| "num_tasks": 21, | |
| "support_examples_per_task": 10, | |
| "seeds": [ | |
| 0, | |
| 1, | |
| 2, | |
| 3, | |
| 4 | |
| ], | |
| "episode_file": "FAME_benchmark/episodes/k10_seed{0..4}/<task>/" | |
| }, | |
| "ood": { | |
| "num_pairs": 12, | |
| "present_pairs": 12, | |
| "support_examples_per_pair": 10, | |
| "seed": 0, | |
| "shift_types": [ | |
| "covariate", | |
| "semantic" | |
| ] | |
| }, | |
| "iid_source_datasets": 19, | |
| "iid_matched_source_datasets": 19, | |
| "iid_test_total": 14958, | |
| "iid_test_positive": 13689, | |
| "iid_test_negative": 1269 | |
| }, | |
| "iid_datasets": [ | |
| { | |
| "source_dataset": "BraTS", | |
| "release_dataset": "BraTS", | |
| "anatomy": "Brain", | |
| "modality": "MRI", | |
| "roi": "Brain tumor", | |
| "test_total": 299, | |
| "test_positive": 237, | |
| "test_negative": 62, | |
| "observed_total": 299, | |
| "observed_positive": 237, | |
| "observed_negative": 62, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "ISLES 2022", | |
| "release_dataset": "ISLES-2022", | |
| "anatomy": "Brain", | |
| "modality": "MRI", | |
| "roi": "Ischemic stroke lesion", | |
| "test_total": 1000, | |
| "test_positive": 700, | |
| "test_negative": 300, | |
| "observed_total": 1000, | |
| "observed_positive": 700, | |
| "observed_negative": 300, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "BUID", | |
| "release_dataset": "BUID", | |
| "anatomy": "Breast", | |
| "modality": "Ultrasound", | |
| "roi": "Breast mass", | |
| "test_total": 222, | |
| "test_positive": 222, | |
| "test_negative": 0, | |
| "observed_total": 222, | |
| "observed_positive": 222, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "BUSI", | |
| "release_dataset": "BUSI", | |
| "anatomy": "Breast", | |
| "modality": "Ultrasound", | |
| "roi": "Breast mass", | |
| "test_total": 770, | |
| "test_positive": 637, | |
| "test_negative": 133, | |
| "observed_total": 770, | |
| "observed_positive": 637, | |
| "observed_negative": 133, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "CVC-ColonDB", | |
| "release_dataset": "CVC_ColonDB", | |
| "anatomy": "Colon", | |
| "modality": "Colonoscopy", | |
| "roi": "Colorectal polyp", | |
| "test_total": 370, | |
| "test_positive": 370, | |
| "test_negative": 0, | |
| "observed_total": 370, | |
| "observed_positive": 370, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "CVC-ClinicDB", | |
| "release_dataset": "CVC_ClinicDB", | |
| "anatomy": "Colon", | |
| "modality": "Colonoscopy", | |
| "roi": "Colorectal polyp", | |
| "test_total": 602, | |
| "test_positive": 602, | |
| "test_negative": 0, | |
| "observed_total": 602, | |
| "observed_positive": 602, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "GlaS", | |
| "release_dataset": "glas", | |
| "anatomy": "Colon", | |
| "modality": "Histopathology", | |
| "roi": "Colorectal gland", | |
| "test_total": 770, | |
| "test_positive": 637, | |
| "test_negative": 133, | |
| "observed_total": 770, | |
| "observed_positive": 637, | |
| "observed_negative": 133, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "Kvasir-SEG", | |
| "release_dataset": "Kvasir-SEG", | |
| "anatomy": "Colon", | |
| "modality": "Colonoscopy", | |
| "roi": "Colorectal polyp", | |
| "test_total": 990, | |
| "test_positive": 990, | |
| "test_negative": 0, | |
| "observed_total": 990, | |
| "observed_positive": 990, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "OIA-DDR", | |
| "release_dataset": "DDR", | |
| "anatomy": "Retina", | |
| "modality": "Color fundus photography", | |
| "roi": "DR-related lesions", | |
| "test_total": 747, | |
| "test_positive": 747, | |
| "test_negative": 0, | |
| "observed_total": 747, | |
| "observed_positive": 747, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "CFP-PM-1203", | |
| "release_dataset": "CFP_PM_1203", | |
| "anatomy": "Retina", | |
| "modality": "Color fundus photography", | |
| "roi": "Pathologic myopia", | |
| "test_total": 1000, | |
| "test_positive": 959, | |
| "test_negative": 41, | |
| "observed_total": 1000, | |
| "observed_positive": 959, | |
| "observed_negative": 41, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "Retinal-Lesions", | |
| "release_dataset": "retinal_lesions_dr", | |
| "anatomy": "Retina", | |
| "modality": "Color fundus photography", | |
| "roi": "DR-related lesions", | |
| "test_total": 1000, | |
| "test_positive": 700, | |
| "test_negative": 300, | |
| "observed_total": 1000, | |
| "observed_positive": 700, | |
| "observed_negative": 300, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "RETOUCH", | |
| "release_dataset": "RETOUCH", | |
| "anatomy": "Retina", | |
| "modality": "OCT B-scan", | |
| "roi": "Retinal fluid", | |
| "test_total": 1000, | |
| "test_positive": 700, | |
| "test_negative": 300, | |
| "observed_total": 1000, | |
| "observed_positive": 700, | |
| "observed_negative": 300, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "COVID19-CT-Lesion", | |
| "release_dataset": "COVID19_CT_Lesion", | |
| "anatomy": "Lung", | |
| "modality": "CT", | |
| "roi": "COVID-19 lung lesion", | |
| "test_total": 999, | |
| "test_positive": 999, | |
| "test_negative": 0, | |
| "observed_total": 999, | |
| "observed_positive": 999, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "MosMedData", | |
| "release_dataset": "MosMedData", | |
| "anatomy": "Lung", | |
| "modality": "CT", | |
| "roi": "COVID-19 lung lesion", | |
| "test_total": 999, | |
| "test_positive": 999, | |
| "test_negative": 0, | |
| "observed_total": 999, | |
| "observed_positive": 999, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "MSD Task06 Lung", | |
| "release_dataset": "MSD_Task06_Lung", | |
| "anatomy": "Lung", | |
| "modality": "CT", | |
| "roi": "Lung tumor", | |
| "test_total": 1000, | |
| "test_positive": 1000, | |
| "test_negative": 0, | |
| "observed_total": 1000, | |
| "observed_positive": 1000, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "PH2", | |
| "release_dataset": "PH2", | |
| "anatomy": "Skin", | |
| "modality": "Dermoscopy", | |
| "roi": "Melanocytic lesion", | |
| "test_total": 190, | |
| "test_positive": 190, | |
| "test_negative": 0, | |
| "observed_total": 190, | |
| "observed_positive": 190, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "ISIC 2018", | |
| "release_dataset": "ISIC2018", | |
| "anatomy": "Skin", | |
| "modality": "Dermoscopy", | |
| "roi": "Skin lesion", | |
| "test_total": 1000, | |
| "test_positive": 1000, | |
| "test_negative": 0, | |
| "observed_total": 1000, | |
| "observed_positive": 1000, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "TG3K", | |
| "release_dataset": "TG3K", | |
| "anatomy": "Thyroid", | |
| "modality": "Ultrasound", | |
| "roi": "Thyroid gland", | |
| "test_total": 1000, | |
| "test_positive": 1000, | |
| "test_negative": 0, | |
| "observed_total": 1000, | |
| "observed_positive": 1000, | |
| "observed_negative": 0, | |
| "status": "match" | |
| }, | |
| { | |
| "source_dataset": "TN3K", | |
| "release_dataset": "TN3K", | |
| "anatomy": "Thyroid", | |
| "modality": "Ultrasound", | |
| "roi": "Thyroid nodule", | |
| "test_total": 1000, | |
| "test_positive": 1000, | |
| "test_negative": 0, | |
| "observed_total": 1000, | |
| "observed_positive": 1000, | |
| "observed_negative": 0, | |
| "status": "match" | |
| } | |
| ], | |
| "ood_pairs": [ | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "BUSI", | |
| "target_dataset": "BUID", | |
| "status": "present", | |
| "pair_id": "cov_BUSI_to_BUID_breast_mass", | |
| "support_total": "10", | |
| "test_total": "222", | |
| "test_positive": "222", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "Kvasir-SEG", | |
| "target_dataset": "CVC-ClinicDB", | |
| "status": "present", | |
| "pair_id": "cov_Kvasir_SEG_to_CVC_ClinicDB_polyp", | |
| "support_total": "10", | |
| "test_total": "602", | |
| "test_positive": "602", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "Kvasir-SEG", | |
| "target_dataset": "CVC-ColonDB", | |
| "status": "present", | |
| "pair_id": "cov_Kvasir_SEG_to_CVC_ColonDB_polyp", | |
| "support_total": "10", | |
| "test_total": "370", | |
| "test_positive": "370", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "ISIC 2018", | |
| "target_dataset": "PH2", | |
| "status": "present", | |
| "pair_id": "cov_ISIC2018_to_PH2_skin_lesion", | |
| "support_total": "10", | |
| "test_total": "190", | |
| "test_positive": "190", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "Retinal-Lesions", | |
| "target_dataset": "DDR", | |
| "status": "present", | |
| "pair_id": "cov_Retinal_Lesions_to_DDR_DR_lesions", | |
| "support_total": "10", | |
| "test_total": "747", | |
| "test_positive": "747", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "covariate", | |
| "source_dataset": "COVID19-CT-Lesion", | |
| "target_dataset": "MosMedData", | |
| "status": "present", | |
| "pair_id": "cov_COVID19_CT_Lesion_to_MosMedData_lung_lesion", | |
| "support_total": "10", | |
| "test_total": "999", | |
| "test_positive": "999", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "BraTS", | |
| "target_dataset": "ISLES 2022", | |
| "status": "present", | |
| "pair_id": "sem_BraTS_to_ISLES2022_brain_mri", | |
| "support_total": "10", | |
| "test_total": "1000", | |
| "test_positive": "700", | |
| "test_negative": "300" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "CFP-PM-1203", | |
| "target_dataset": "Retinal-Lesions", | |
| "status": "present", | |
| "pair_id": "sem_CFP_PM_1203_to_Retinal_Lesions_fundus", | |
| "support_total": "10", | |
| "test_total": "1000", | |
| "test_positive": "700", | |
| "test_negative": "300" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "CFP-PM-1203", | |
| "target_dataset": "DDR", | |
| "status": "present", | |
| "pair_id": "sem_CFP_PM_1203_to_DDR_fundus", | |
| "support_total": "10", | |
| "test_total": "747", | |
| "test_positive": "747", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "COVID19-CT-Lesion", | |
| "target_dataset": "MSD Task06 Lung", | |
| "status": "present", | |
| "pair_id": "sem_COVID19_CT_Lesion_to_MSD_Task06_Lung_ct", | |
| "support_total": "10", | |
| "test_total": "1000", | |
| "test_positive": "1000", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "BUSI", | |
| "target_dataset": "TN3K", | |
| "status": "present", | |
| "pair_id": "sem_BUSI_to_TN3K_ultrasound", | |
| "support_total": "10", | |
| "test_total": "1000", | |
| "test_positive": "1000", | |
| "test_negative": "0" | |
| }, | |
| { | |
| "shift_type": "semantic", | |
| "source_dataset": "TN3K", | |
| "target_dataset": "TG3K", | |
| "status": "present", | |
| "pair_id": "sem_TN3K_to_TG3K_ultrasound", | |
| "support_total": "10", | |
| "test_total": "1000", | |
| "test_positive": "1000", | |
| "test_negative": "0" | |
| } | |
| ] | |
| } | |