sync EmbedEd artifacts (phase01-v6)

.gitattributes

@@ -50,3 +50,4 @@ artifacts/sprime/Clones[[:space:]]paper[[:space:]]replication[[:space:]]package[
 artifacts/sprime/Clones[[:space:]]paper[[:space:]]replication[[:space:]]package[[:space:]]release[[:space:]]zip/oj_dataset_experiments/astnn/data/c/oj_and_scb/programs.pkl filter=lfs diff=lfs merge=lfs -text
 artifacts/corpus_emb.npy filter=lfs diff=lfs merge=lfs -text
 artifacts/runs/C0_13/predictions.npz filter=lfs diff=lfs merge=lfs -text
+artifacts/sprime_emb.npy filter=lfs diff=lfs merge=lfs -text

artifacts/phase3_decisions.json

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+{
+  "recorded_utc": "2026-09-28 12:07 UTC",
+  "version": "phase01-v6",
+  "holdout_k": 3,
+  "amendment": null,
+  "decisions": {
+    "D3": {
+      "choice": "B",
+      "rationale": "Fine-tune on s′ with negatives mined from s′ itself - the only option that keeps negative strategy as the independent variable while training on functionality-labelled data (PHASE3_PLAN §3.3). Option (A) is kept as the free secondary reading in §9; (C) is impossible on the CodeXGLUE file."
+    },
+    "D4": {
+      "rule": "max_pair_count_then_lowest_id",
+      "rationale": "\"Best-represented\" is measured, not assumed: the census (§5) prints and commits the per-functionality pair counts, takes the k highest and breaks ties by functionality id - before any F1 is computed."
+    },
+    "D5": {
+      "choice": "embeded/",
+      "rationale": "PHASE3_PLAN header note: matches the tested runner modules and both call sites (CLOUD.md §4, scripts/run_all.sh); IMPLEMENTATION_PLAN §3 is re-pointed from eval/ + demo/."
+    },
+    "D6": {
+      "choice": "2x2: (C0 decision) x (C_best decision)",
+      "rationale": "\"All four outcome modes\" (SCOPE P2-21) is never enumerated in the repo; this is the reading PHASE3_PLAN §5 asks to confirm, and the demo check in §12 requires at least one real held-out pair in the picker for each of the four cells."
+    }
+  }
+}

artifacts/sprime_census.json

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+  "version": "phase01-v6",
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+  "source_rows": 4600,
+  "generated_utc": "2026-09-28T12:07:31Z"
+}

artifacts/sprime_emb.meta.json

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+{
+  "model": "microsoft/graphcodebert-base",
+  "max_len": 512,
+  "n": 4140,
+  "pooling": "mean",
+  "version": "phase01-v6"
+}

artifacts/sprime_emb.npy

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+oid sha256:9053c1d9bdb442b98e2ce85319b15f2220da6a7f1b1f53cab95a95ff23b77814
+size 12718208

artifacts/sprime_mining_summary.json

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+    "k": 20,
+    "n_triples": 16000,
+    "stats": {
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+    "file": "/content/embeded-artifacts/sprime_triples_C1.jsonl"
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+    "n_anchors": 800,
+    "k": 20,
+    "n_triples": 16000,
+    "stats": {
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+    "file": "/content/embeded-artifacts/sprime_triples_C2.jsonl"
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+    "k": 20,
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+    "stats": {
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+    "file": "/content/embeded-artifacts/sprime_triples_C3.jsonl"
+  },
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+    "source_md5": "c5495307a422abf9380e117044e1c48e",
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artifacts/sprime_split.json

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+  "counts": {
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+    "valid": 400,
+    "unseen": 600
+  },
+  "per_class": {
+    "valid": {
+      "0": 200,
+      "1": 200
+    },
+    "unseen": {
+      "0": 300,
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+  "source_md5": "c5495307a422abf9380e117044e1c48e",
+  "source_rows": 4600
+}

sync_manifest.json

@@ -1,6 +1,6 @@
 {
   "version": "phase01-v6",
-  "synced_at_utc": "2026-09-28T12:07:14Z",
+  "synced_at_utc": "2026-09-28T12:14:25Z",
   "staged_files": [
     "artifacts/audit/audit_key.csv",
     "artifacts/audit/audit_labels.csv",
@@ -18,9 +18,19 @@
     "artifacts/pairs_test.tsv",
     "artifacts/pairs_train.tsv",
     "artifacts/pairs_valid.tsv",
+    "artifacts/phase3_decisions.json",
     "artifacts/runs/C0_13/eval_config.json",
     "artifacts/runs/C0_13/eval_metrics.json",
     "artifacts/runs/C0_13/predictions.npz",
+    "artifacts/sprime_census.json",
+    "artifacts/sprime_emb.meta.json",
+    "artifacts/sprime_emb.npy",
+    "artifacts/sprime_fragments.jsonl",
+    "artifacts/sprime_mining_summary.json",
+    "artifacts/sprime_split.json",
+    "artifacts/sprime_triples_C1.jsonl",
+    "artifacts/sprime_triples_C2.jsonl",
+    "artifacts/sprime_triples_C3.jsonl",
     "artifacts/token_lengths.json",
     "artifacts/triples_C1.jsonl",
     "artifacts/triples_C2.jsonl",
@@ -28,8 +38,7 @@
     "artifacts/v5-backup/mining_summary.json",
     "artifacts/v5-backup/triples_C1.jsonl",
     "artifacts/v5-backup/triples_C2.jsonl",
-    "artifacts/v5-backup/triples_C3.jsonl",
-    "report/measurements.md"
+    "artifacts/v5-backup/triples_C3.jsonl"
   ],
   "excluded_patterns": [
     "sprime/*",