sync EmbedEd artifacts (phase01-v8)

artifacts/sprime_census.json

@@ -62,8 +62,8 @@
     "1": 2300
   },
   "n_functionalities": 23,
-  "version": "phase01-v6",
+  "version": "phase01-v8",
   "source_md5": "c5495307a422abf9380e117044e1c48e",
   "source_rows": 4600,
-  "generated_utc": "2026-09-28T15:25:54Z"
+  "generated_utc": "2026-10-03T07:39:24Z"
 }

artifacts/sprime_emb.meta.json

@@ -3,5 +3,5 @@
   "max_len": 512,
   "n": 4140,
   "pooling": "mean",
-  "version": "phase01-v6"
+  "version": "phase01-v8"
 }

artifacts/sprime_mining_summary.json

@@ -30,8 +30,44 @@
     },
     "file": "/content/embeded-artifacts/sprime_triples_C3.jsonl"
   },
+  "C4": {
+    "strategy": "filtered",
+    "n_anchors": 800,
+    "k": 20,
+    "n_triples": 16000,
+    "stats": {
+      "jaccard_filtered": 12949,
+      "head_skipped": 8000,
+      "anchors_short": 0
+    },
+    "file": "/content/embeded-artifacts/sprime_triples_C4.jsonl"
+  },
+  "C5": {
+    "strategy": "filtered_random",
+    "n_anchors": 800,
+    "k": 20,
+    "n_triples": 16000,
+    "stats": {
+      "head_skipped": 8000,
+      "anchors_short": 0,
+      "jaccard_filtered": 350
+    },
+    "file": "/content/embeded-artifacts/sprime_triples_C5.jsonl"
+  },
+  "C6": {
+    "strategy": "filtered_semantic",
+    "n_anchors": 800,
+    "k": 20,
+    "n_triples": 16000,
+    "stats": {
+      "jaccard_filtered": 16169,
+      "head_skipped": 8000,
+      "anchors_short": 0
+    },
+    "file": "/content/embeded-artifacts/sprime_triples_C6.jsonl"
+  },
   "_run": {
-    "version": "phase01-v6",
+    "version": "phase01-v8",
     "k": 20,
     "n_anchors": 800,
     "cap": 16000,

artifacts/sprime_split.json

@@ -1,5 +1,5 @@
 {
-  "version": "phase01-v6",
+  "version": "phase01-v8",
   "seed": 13,
   "valid_frac": 0.1,
   "holdout": [

artifacts/sprime_v6_archive/sprime_C1_13__eval_metrics.json

@@ -0,0 +1,47 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "bc5dfb82336d3bdc",
+  "smoke": false,
+  "kind": "generalisation",
+  "model": "microsoft/graphcodebert-base + sprime C1 seed 13 (step 2000)",
+  "corpus": "sprime (bcb_v2_sampled_bf)",
+  "doi": "10.5281/zenodo.17238379",
+  "threshold_policy": "max_f1_on_valid",
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "threshold": 0.716466,
+  "f1_seen": 0.7617,
+  "f1_unseen": 0.723,
+  "delta": 0.0387,
+  "valid": {
+    "precision": 0.6867,
+    "recall": 0.855,
+    "f1": 0.7617,
+    "n": 400
+  },
+  "valid_map_at_r": 0.6045,
+  "test_f1": 0.723,
+  "test_precision": 0.6814,
+  "test_recall": 0.77,
+  "test_map_at_r": 0.5804,
+  "test": {
+    "precision": 0.6814,
+    "recall": 0.77,
+    "f1": 0.723,
+    "tp": 231,
+    "fp": 108,
+    "fn": 69,
+    "n": 600
+  },
+  "n_pairs": {
+    "valid": 400,
+    "test": 600
+  },
+  "encode_seconds": 10.6,
+  "evaluated_utc": "2026-09-28T14:32:47Z"
+}

artifacts/sprime_v6_archive/sprime_C1_13__metrics.json

@@ -0,0 +1,27 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "ba683f7e0fba2109",
+  "smoke": false,
+  "kind": "generalisation",
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "loss_final_mean": 0.006536,
+  "steps": 2000,
+  "triples": 16000,
+  "epochs": 1,
+  "train_seconds": 1247.6,
+  "triples_per_s": 1.6,
+  "checkpoint": "/content/embeded-artifacts/runs/sprime_C1_13/checkpoint.pt",
+  "device": "cuda",
+  "checkpoint_reload": {
+    "tensors": 199,
+    "epoch": 1,
+    "step": 2000
+  },
+  "finished_utc": "2026-09-28T14:32:34Z"
+}

artifacts/sprime_v6_archive/sprime_C1_13__run_config.json

@@ -0,0 +1,46 @@
+{
+  "version": "phase01-v6",
+  "condition": "C1",
+  "seed": 13,
+  "smoke": false,
+  "kind": "generalisation",
+  "corpus": "sprime (bcb_v2_sampled_bf)",
+  "doi": "10.5281/zenodo.17238379",
+  "holdout_k": 3,
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "threshold_policy": "max_f1_on_valid",
+  "valid_frac": 0.1,
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "option": "A (token-only)",
+  "loss": "triplet",
+  "triplet_margin": 0.1,
+  "optimizer": "adamw",
+  "lr": 2e-05,
+  "weight_decay": 0.01,
+  "warmup_steps": 100,
+  "grad_clip": 1.0,
+  "batch": 8,
+  "epochs": 1,
+  "max_len": 512,
+  "amp_dtype": "float16",
+  "grad_checkpoint": false,
+  "k_negatives": 20,
+  "sprime_train_cap": 16000,
+  "seed_list": [
+    13,
+    14,
+    15
+  ],
+  "artifacts": {
+    "sprime_fragments.jsonl": "e78d8608adefa3d7",
+    "sprime_split.json": "b3df426088cd0ba3",
+    "sprime_mining_summary.json": "f9a4ab9382b13da1",
+    "sprime_triples_C1.jsonl": "82ac60bfe9c97321"
+  },
+  "fingerprint": "ba683f7e0fba2109"
+}

artifacts/sprime_v6_archive/sprime_C1_14__eval_metrics.json

@@ -0,0 +1,47 @@
+{
+  "condition": "C1",
+  "seed": 14,
+  "version": "phase01-v6",
+  "fingerprint": "1b7306e86c74ac23",
+  "smoke": false,
+  "kind": "generalisation",
+  "model": "microsoft/graphcodebert-base + sprime C1 seed 14 (step 2000)",
+  "corpus": "sprime (bcb_v2_sampled_bf)",
+  "doi": "10.5281/zenodo.17238379",
+  "threshold_policy": "max_f1_on_valid",
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "threshold": 0.602217,
+  "f1_seen": 0.7639,
+  "f1_unseen": 0.7564,
+  "delta": 0.0075,
+  "valid": {
+    "precision": 0.6481,
+    "recall": 0.93,
+    "f1": 0.7639,
+    "n": 400
+  },
+  "valid_map_at_r": 0.6241,
+  "test_f1": 0.7564,
+  "test_precision": 0.6576,
+  "test_recall": 0.89,
+  "test_map_at_r": 0.6225,
+  "test": {
+    "precision": 0.6576,
+    "recall": 0.89,
+    "f1": 0.7564,
+    "tp": 267,
+    "fp": 139,
+    "fn": 33,
+    "n": 600
+  },
+  "n_pairs": {
+    "valid": 400,
+    "test": 600
+  },
+  "encode_seconds": 11.2,
+  "evaluated_utc": "2026-09-28T12:59:44Z"
+}

artifacts/sprime_v6_archive/sprime_C1_14__metrics.json

@@ -0,0 +1,27 @@
+{
+  "condition": "C1",
+  "seed": 14,
+  "version": "phase01-v6",
+  "fingerprint": "3499bc6c05cdceb4",
+  "smoke": false,
+  "kind": "generalisation",
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "loss_final_mean": 0.00634,
+  "steps": 2000,
+  "triples": 16000,
+  "epochs": 1,
+  "train_seconds": 1285.3,
+  "triples_per_s": 1.56,
+  "checkpoint": "/content/embeded-artifacts/runs/sprime_C1_14/checkpoint.pt",
+  "device": "cuda",
+  "checkpoint_reload": {
+    "tensors": 199,
+    "epoch": 1,
+    "step": 2000
+  },
+  "finished_utc": "2026-09-28T12:59:31Z"
+}

artifacts/sprime_v6_archive/sprime_C1_14__run_config.json

@@ -0,0 +1,46 @@
+{
+  "version": "phase01-v6",
+  "condition": "C1",
+  "seed": 14,
+  "smoke": false,
+  "kind": "generalisation",
+  "corpus": "sprime (bcb_v2_sampled_bf)",
+  "doi": "10.5281/zenodo.17238379",
+  "holdout_k": 3,
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "threshold_policy": "max_f1_on_valid",
+  "valid_frac": 0.1,
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "option": "A (token-only)",
+  "loss": "triplet",
+  "triplet_margin": 0.1,
+  "optimizer": "adamw",
+  "lr": 2e-05,
+  "weight_decay": 0.01,
+  "warmup_steps": 100,
+  "grad_clip": 1.0,
+  "batch": 8,
+  "epochs": 1,
+  "max_len": 512,
+  "amp_dtype": "float16",
+  "grad_checkpoint": false,
+  "k_negatives": 20,
+  "sprime_train_cap": 16000,
+  "seed_list": [
+    13,
+    14,
+    15
+  ],
+  "artifacts": {
+    "sprime_fragments.jsonl": "e78d8608adefa3d7",
+    "sprime_split.json": "b3df426088cd0ba3",
+    "sprime_mining_summary.json": "f9a4ab9382b13da1",
+    "sprime_triples_C1.jsonl": "82ac60bfe9c97321"
+  },
+  "fingerprint": "3499bc6c05cdceb4"
+}

artifacts/sprime_v6_archive/sprime_C1_15__run_config.json

@@ -0,0 +1,46 @@
+{
+  "version": "phase01-v6",
+  "condition": "C1",
+  "seed": 15,
+  "smoke": false,
+  "kind": "generalisation",
+  "corpus": "sprime (bcb_v2_sampled_bf)",
+  "doi": "10.5281/zenodo.17238379",
+  "holdout_k": 3,
+  "holdout_functionalities": [
+    "10",
+    "13",
+    "14"
+  ],
+  "threshold_policy": "max_f1_on_valid",
+  "valid_frac": 0.1,
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "option": "A (token-only)",
+  "loss": "triplet",
+  "triplet_margin": 0.1,
+  "optimizer": "adamw",
+  "lr": 2e-05,
+  "weight_decay": 0.01,
+  "warmup_steps": 100,
+  "grad_clip": 1.0,
+  "batch": 8,
+  "epochs": 1,
+  "max_len": 512,
+  "amp_dtype": "float16",
+  "grad_checkpoint": false,
+  "k_negatives": 20,
+  "sprime_train_cap": 16000,
+  "seed_list": [
+    13,
+    14,
+    15
+  ],
+  "artifacts": {
+    "sprime_fragments.jsonl": "e78d8608adefa3d7",
+    "sprime_split.json": "b3df426088cd0ba3",
+    "sprime_mining_summary.json": "f9a4ab9382b13da1",
+    "sprime_triples_C1.jsonl": "82ac60bfe9c97321"
+  },
+  "fingerprint": "76c6a2ad0c2e1783"
+}

sync_manifest.json

@@ -1,6 +1,6 @@
 {
   "version": "phase01-v8",
-  "synced_at_utc": "2026-10-03T07:27:41Z",
+  "synced_at_utc": "2026-10-03T07:56:23Z",
   "staged_files": [
     "artifacts/audit/audit_key.csv",
     "artifacts/audit/audit_labels.csv",
@@ -307,22 +307,6 @@
     "artifacts/runs/smoke_C5_13/predictions.npz",
     "artifacts/runs/smoke_C5_13/run_config.json",
     "artifacts/runs/smoke_C5_13/train_log.jsonl",
-    "artifacts/runs/sprime_C1_13/checkpoint.pt",
-    "artifacts/runs/sprime_C1_13/eval_config.json",
-    "artifacts/runs/sprime_C1_13/eval_metrics.json",
-    "artifacts/runs/sprime_C1_13/metrics.json",
-    "artifacts/runs/sprime_C1_13/predictions.npz",
-    "artifacts/runs/sprime_C1_13/run_config.json",
-    "artifacts/runs/sprime_C1_13/train_log.jsonl",
-    "artifacts/runs/sprime_C1_14/checkpoint.pt",
-    "artifacts/runs/sprime_C1_14/eval_config.json",
-    "artifacts/runs/sprime_C1_14/eval_metrics.json",
-    "artifacts/runs/sprime_C1_14/metrics.json",
-    "artifacts/runs/sprime_C1_14/predictions.npz",
-    "artifacts/runs/sprime_C1_14/run_config.json",
-    "artifacts/runs/sprime_C1_14/train_log.jsonl",
-    "artifacts/runs/sprime_C1_15/run_config.json",
-    "artifacts/runs/sprime_C1_15/train_log.jsonl",
     "artifacts/sprime_census.json",
     "artifacts/sprime_emb.meta.json",
     "artifacts/sprime_emb.npy",
@@ -333,6 +317,16 @@
     "artifacts/sprime_triples_C1.jsonl",
     "artifacts/sprime_triples_C2.jsonl",
     "artifacts/sprime_triples_C3.jsonl",
+    "artifacts/sprime_triples_C4.jsonl",
+    "artifacts/sprime_triples_C5.jsonl",
+    "artifacts/sprime_triples_C6.jsonl",
+    "artifacts/sprime_v6_archive/sprime_C1_13__eval_metrics.json",
+    "artifacts/sprime_v6_archive/sprime_C1_13__metrics.json",
+    "artifacts/sprime_v6_archive/sprime_C1_13__run_config.json",
+    "artifacts/sprime_v6_archive/sprime_C1_14__eval_metrics.json",
+    "artifacts/sprime_v6_archive/sprime_C1_14__metrics.json",
+    "artifacts/sprime_v6_archive/sprime_C1_14__run_config.json",
+    "artifacts/sprime_v6_archive/sprime_C1_15__run_config.json",
     "artifacts/token_lengths.json",
     "artifacts/triples_C1.jsonl",
     "artifacts/triples_C1.jsonl.v6bak",
@@ -350,8 +344,7 @@
     "artifacts/v5-backup/mining_summary.json",
     "artifacts/v5-backup/triples_C1.jsonl",
     "artifacts/v5-backup/triples_C2.jsonl",
-    "artifacts/v5-backup/triples_C3.jsonl",
-    "report/measurements.md"
+    "artifacts/v5-backup/triples_C3.jsonl"
   ],
   "excluded_patterns": [
     "sprime/*",