NeCast-1000G / low_coverage /analysis /phlash /e2_apply_missing.py
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"""E2: apply the frozen failure policy's verdict to the two phase 3 phlash fits that failed on gpu502-11.
The verdict (results/E2_fit_failures.json; bench_h2h.fit_retry.classify/decide on the original attempts) is
'deterministic' -> MISSING, no retry. This script lays the fits out as the policy prescribes:
* the original attempt -> <fit_dir>/attempts/attempt00_job<id>_<utc>/ with ATTEMPT.json (read-only);
* <fit_dir>/MISSING.json via bench_h2h.fit_retry.write_missing (the fit is never scored in the primary result);
* the re-run made before the classification (55051135_<task>) -> fits/sensitivity_rerun/p3/<pop>/<window>/,
scored only in the labelled sensitivity line.
PYTHONPATH=<bench>/tool /usr/bin/python3 -B e2_apply_missing.py
"""
import dataclasses, json, os
from pathlib import Path
from bench_h2h import fit_retry as FR
PH = Path("$WORK/bench_h2h_20260915/real/e2_phlash_20261102")
X = Path("$WORK/paper_exp_20261102")
RERUN = {"54999600_73": "55051135_73", "54999600_97": "55051135_97"}
def main():
cls = json.load(open(X / "E2/results/E2_fit_failures.json"))
done = []
for c in cls["cases"]:
if c["decision"] != "missing":
raise SystemExit(f"{c['fit']}: decision {c['decision']}, not missing; nothing to apply")
_, pop, wid = c["fit"].split("/")
fit_dir = PH / "fits" / "p3" / pop / wid
rerun_out = PH / "fits" / "sensitivity_rerun" / "p3" / pop / wid
attempt_src = next((PH / "fits" / "attempts").glob(f"p3_{pop}_{wid}.failed-*"))
if (fit_dir / "MISSING.json").exists():
done.append(c["fit"]); continue
# 1. the re-run (if finished) leaves the primary fit path for the sensitivity tree
if fit_dir.exists():
if not (fit_dir / "curve64.npz").exists():
raise SystemExit(f"{fit_dir} exists without a curve: the re-run has not finished")
rerun_out.parent.mkdir(parents=True, exist_ok=True)
os.replace(fit_dir, rerun_out)
# 2. the original attempt goes into <fit_dir>/attempts/, as fit_retry.archive_attempt lays it out
v = FR.Verdict(**c["verdict"])
target = fit_dir / "attempts" / f"attempt00_job{c['original_job']}_{FR.utc_stamp()}"
target.parent.mkdir(parents=True)
os.replace(attempt_src, target)
(target / "ATTEMPT.json").write_text(json.dumps({
"schema": FR.ATTEMPT_SCHEMA, "utc": FR.utc_stamp(), "job_id": c["original_job"], "verdict": dataclasses.asdict(v),
"decision": "missing", "moved": sorted(p.name for p in target.iterdir())}, indent=1, sort_keys=True) + "\n")
FR._make_read_only(target)
# 3. the terminal record
subs = [{"job_id": c["original_job"], "utc": None, "retry": None, "resources": {"gres": "gpu:1", "cpus": 4, "mem": "16G", "time": "02:00:00"}}]
FR.write_missing(fit_dir, v, c["why"], subs)
rec = json.load(open(fit_dir / "MISSING.json"))
rec_note = {"rerun_for_sensitivity_only": {"job": RERUN.get(c["original_job"]), "path": str(rerun_out),
"present": (rerun_out / "curve64.npz").exists()}}
(fit_dir.parent / f"{wid}.MISSING_NOTE.json").write_text(json.dumps(rec_note, indent=1) + "\n")
done.append(c["fit"])
print(c["fit"], "MISSING written; state", rec["state"], "| re-run kept for sensitivity:", rec_note["rerun_for_sensitivity_only"]["present"])
print("applied:", done)
if __name__ == "__main__":
main()