Datasets:
Formats:
parquet
Size:
100K - 1M
Tags:
population-genetics
demographic-inference
effective-population-size
coalescent
msprime
simulation
License:
| # macOS / editor noise | |
| .DS_Store | |
| ._* | |
| .idea/ | |
| .vscode/ | |
| *.swp | |
| *.swo | |
| # Python caches / build outputs | |
| __pycache__/ | |
| *.py[cod] | |
| *$py.class | |
| .pytest_cache/ | |
| .ruff_cache/ | |
| .mypy_cache/ | |
| .pyre/ | |
| .coverage | |
| coverage.xml | |
| htmlcov/ | |
| build/ | |
| dist/ | |
| *.egg-info/ | |
| # Python environments | |
| .venv/ | |
| venv/ | |
| env/ | |
| .env | |
| .env.* | |
| !.env.example | |
| *.conda | |
| # Jupyter / notebooks | |
| .ipynb_checkpoints/ | |
| # Logs and local scratch | |
| *.log | |
| logs/ | |
| tmp/ | |
| temp/ | |
| scratch/ | |
| # Generated simulator datasets and shards | |
| DLCoalSim-*/ | |
| DLCoalSim_Out/ | |
| DLCoalSim-Out/ | |
| sim_dat/ | |
| outputs/ | |
| datasets/ | |
| data/ | |
| !data/ | |
| data/* | |
| !data/templates/ | |
| data/templates/* | |
| !data/templates/README.md | |
| !data/templates/human_ne/ | |
| !data/templates/human_ne/** | |
| !data/templates/stdpopsim_single_pop/ | |
| !data/templates/stdpopsim_single_pop/** | |
| data/**/.DS_Store | |
| data/**/.Rhistory | |
| shards/ | |
| splits/ | |
| manifest.json | |
| config.json | |
| # PyTorch / deep learning artifacts | |
| checkpoints/ | |
| models/ | |
| runs/ | |
| wandb/ | |
| lightning_logs/ | |
| tensorboard/ | |
| mlruns/ | |
| *.pt | |
| *.pth | |
| *.ckpt | |
| *.onnx | |
| *.safetensors | |
| # Large population-genetics intermediate files | |
| *.trees | |
| *.ts | |
| *.vcf | |
| *.vcf.gz | |
| *.bcf | |
| *.bed.gz | |
| *.bim | |
| *.fam | |
| *.pgen | |
| *.pvar | |
| *.psam | |
| # Raw/downloaded map sources and processing caches | |
| maps/**/raw/ | |
| maps/**/vcf/ | |
| maps/**/.cache/ | |
| maps/**/script/__pycache__/ | |
| # Keep canonical processed maps and docs trackable. | |
| !maps/**/output/ | |
| !maps/**/output/**/*.bed | |
| !maps/**/*.md | |
| dlcoalsim.egg-info/ | |