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- .gitattributes +44 -0
- output/preprocess/Generalized_Anxiety_Disorder/TCGA.csv +3 -0
- output/preprocess/Generalized_Anxiety_Disorder/gene_data/TCGA.csv +3 -0
- output/preprocess/Huntingtons_Disease/TCGA.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/TCGA.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/TCGA_original.csv +3 -0
- output/preprocess/Hypothyroidism/gene_data/GSE32445.csv +3 -0
- output/preprocess/Hypothyroidism/gene_data/GSE75678.csv +3 -0
- output/preprocess/Insomnia/GSE208668.csv +0 -0
- output/preprocess/Intellectual_Disability/GSE100680.csv +0 -0
- output/preprocess/Intellectual_Disability/GSE158385.csv +3 -0
- output/preprocess/Intellectual_Disability/GSE192767.csv +3 -0
- output/preprocess/Intellectual_Disability/GSE285666.csv +3 -0
- output/preprocess/Intellectual_Disability/GSE59630.csv +3 -0
- output/preprocess/Intellectual_Disability/GSE89594.csv +3 -0
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- output/preprocess/Irritable_bowel_syndrome_(IBS)/GSE138297.csv +3 -0
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- output/preprocess/Irritable_bowel_syndrome_(IBS)/cohort_info.json +72 -0
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.gitattributes
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output/preprocess/Generalized_Anxiety_Disorder/TCGA.csv
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Intellectual_Disability,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
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output/preprocess/Intellectual_Disability/clinical_data/GSE63870.csv
ADDED
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|
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ADDED
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| 1 |
+
,GSM4104672,GSM4104673,GSM4104674,GSM4104675,GSM4104676,GSM4104677,GSM4104678,GSM4104679,GSM4104680,GSM4104681,GSM4104682,GSM4104683,GSM4104684,GSM4104685,GSM4104686,GSM4104687,GSM4104688,GSM4104689,GSM4104690,GSM4104691,GSM4104692,GSM4104693,GSM4104694,GSM4104695,GSM4104696,GSM4104697,GSM4104698,GSM4104699,GSM4104700,GSM4104701,GSM4104702,GSM4104703,GSM4104704,GSM4104705,GSM4104706,GSM4104707,GSM4104708,GSM4104709,GSM4104710,GSM4104711,GSM4104712,GSM4104713,GSM4104714,GSM4104715,GSM4104716
|
| 2 |
+
Irritable_bowel_syndrome_(IBS),1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0
|
| 3 |
+
Age,49.0,49.0,49.0,21.0,21.0,21.0,31.0,31.0,31.0,59.0,59.0,59.0,40.0,40.0,40.0,33.0,33.0,33.0,28.0,28.0,28.0,40.0,40.0,40.0,36.0,36.0,36.0,50.0,50.0,50.0,27.0,27.0,27.0,23.0,23.0,23.0,50.0,50.0,50.0,32.0,32.0,32.0,38.0,38.0,38.0
|
| 4 |
+
Gender,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/GSE20881.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
GSM522094,GSM522095,GSM522096,GSM522097,GSM522098,GSM522099,GSM522100,GSM522101,GSM522102,GSM522103,GSM522104,GSM522105,GSM522106,GSM522107,GSM522108,GSM522109,GSM522110,GSM522111,GSM522112,GSM522113,GSM522114,GSM522115,GSM522116,GSM522117,GSM522118,GSM522119,GSM522120,GSM522121,GSM522122,GSM522123,GSM522124,GSM522125,GSM522126,GSM522127,GSM522128,GSM522129,GSM522130,GSM522131,GSM522132,GSM522133,GSM522134,GSM522135,GSM522136,GSM522137,GSM522138,GSM522139,GSM522140,GSM522141,GSM522142,GSM522143,GSM522144,GSM522145,GSM522146,GSM522147,GSM522148,GSM522149,GSM522150,GSM522151,GSM522152,GSM522153,GSM522154,GSM522155,GSM522156,GSM522157,GSM522158,GSM522159,GSM522160,GSM522161,GSM522162,GSM522163,GSM522164,GSM522165,GSM522166,GSM522167,GSM522168,GSM522169,GSM522170,GSM522171,GSM522172,GSM522173,GSM522174,GSM522175,GSM522176,GSM522177,GSM522178,GSM522179,GSM522180,GSM522181,GSM522182,GSM522183,GSM522184,GSM522185,GSM522186,GSM522187,GSM522188,GSM522189,GSM522190,GSM522191,GSM522192,GSM522193,GSM522194,GSM522195,GSM522196,GSM522197,GSM522198,GSM522199,GSM522200,GSM522201,GSM522202,GSM522203,GSM522204,GSM522205,GSM522206,GSM522207,GSM522208,GSM522209,GSM522210,GSM522211,GSM522212,GSM522213,GSM522214,GSM522215,GSM522216,GSM522217,GSM522218,GSM522219,GSM522220,GSM522221,GSM522222,GSM522223,GSM522224,GSM522225,GSM522226,GSM522227,GSM522228,GSM522229,GSM522230,GSM522231,GSM522232,GSM522233,GSM522234,GSM522235,GSM522236,GSM522237,GSM522238,GSM522239,GSM522240,GSM522241,GSM522242,GSM522243,GSM522244,GSM522245,GSM522246,GSM522247,GSM522248,GSM522249,GSM522250,GSM522251,GSM522252,GSM522253,GSM522254,GSM522255,GSM522256,GSM522257,GSM522258,GSM522259,GSM522260,GSM522261,GSM522262,GSM522263,GSM522264,GSM522265
|
| 2 |
+
0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
| 3 |
+
42.0,43.0,40.0,21.0,21.0,18.0,72.0,33.0,945.0,48.0,51.0,23.0,24.0,24.0,69.0,77.0,49.0,38.0,42.0,33.0,51.0,42.0,40.0,33.0,21.0,18.0,945.0,43.0,48.0,51.0,23.0,24.0,69.0,77.0,49.0,38.0,40.0,33.0,21.0,945.0,48.0,51.0,23.0,24.0,69.0,77.0,38.0,35.0,51.0,51.0,46.0,46.0,46.0,44.0,44.0,44.0,28.0,28.0,28.0,27.0,27.0,18.0,69.0,24.0,24.0,18.0,24.0,55.0,46.0,46.0,54.0,54.0,40.0,35.0,25.0,36.0,48.0,56.0,36.0,48.0,40.0,28.0,43.0,27.0,82.0,43.0,39.0,34.0,35.0,29.0,46.0,47.0,63.0,76.0,43.0,23.0,16.0,28.0,51.0,26.0,21.0,41.0,54.0,27.0,47.0,29.0,36.0,43.0,63.0,40.0,27.0,56.0,36.0,41.0,21.0,46.0,38.0,54.0,46.0,51.0,52.0,54.0,40.0,43.0,27.0,41.0,29.0,47.0,46.0,21.0,40.0,28.0,27.0,43.0,23.0,48.0,74.0,47.0,41.0,36.0,43.0,63.0,39.0,26.0,27.0,40.0,44.0,33.0,47.0,35.0,21.0,48.0,77.0,43.0,34.0,43.0,29.0,41.0,51.0,41.0,48.0,34.0,29.0,47.0,28.0,37.0,47.0,46.0,38.0,16.0,56.0,39.0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/GSE25220.csv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
GSM620750,GSM620751,GSM620752,GSM620753,GSM620754,GSM620755,GSM620756,GSM620757,GSM620758,GSM620759,GSM620760,GSM620761,GSM620762,GSM620763,GSM620764,GSM620765,GSM620766,GSM620767,GSM620768,GSM620769,GSM620770,GSM620771,GSM620772,GSM620773,GSM620774,GSM620775,GSM620776,GSM620777,GSM620778,GSM620779,GSM620780,GSM620781,GSM620782,GSM620783,GSM620784,GSM620785,GSM620786,GSM620787,GSM620788,GSM620789,GSM620790,GSM620791,GSM620792,GSM620793
|
| 2 |
+
0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0
|
| 3 |
+
57.0,57.0,65.0,65.0,44.0,72.0,60.0,60.0,57.0,57.0,25.0,25.0,31.0,31.0,48.0,48.0,54.0,71.0,71.0,63.0,29.0,29.0,61.0,61.0,39.0,65.0,55.0,69.0,65.0,53.0,40.0,51.0,54.0,40.0,40.0,64.0,64.0,47.0,54.0,58.0,58.0,46.0,46.0,55.0
|
| 4 |
+
1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/GSE36701.csv
ADDED
|
@@ -0,0 +1,222 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
,Irritable_bowel_syndrome_(IBS)
|
| 2 |
+
GSM899034,
|
| 3 |
+
GSM899035,
|
| 4 |
+
GSM899036,
|
| 5 |
+
GSM899037,
|
| 6 |
+
GSM899038,
|
| 7 |
+
GSM899039,
|
| 8 |
+
GSM899040,
|
| 9 |
+
GSM899041,
|
| 10 |
+
GSM899042,
|
| 11 |
+
GSM899043,
|
| 12 |
+
GSM899044,
|
| 13 |
+
GSM899045,
|
| 14 |
+
GSM899046,
|
| 15 |
+
GSM899047,
|
| 16 |
+
GSM899048,
|
| 17 |
+
GSM899049,
|
| 18 |
+
GSM899050,
|
| 19 |
+
GSM899051,
|
| 20 |
+
GSM899052,
|
| 21 |
+
GSM899053,
|
| 22 |
+
GSM899054,
|
| 23 |
+
GSM899055,
|
| 24 |
+
GSM899056,
|
| 25 |
+
GSM899057,
|
| 26 |
+
GSM899058,
|
| 27 |
+
GSM899059,
|
| 28 |
+
GSM899060,
|
| 29 |
+
GSM899061,
|
| 30 |
+
GSM899062,
|
| 31 |
+
GSM899063,
|
| 32 |
+
GSM899064,
|
| 33 |
+
GSM899065,
|
| 34 |
+
GSM899066,
|
| 35 |
+
GSM899067,
|
| 36 |
+
GSM899068,
|
| 37 |
+
GSM899069,
|
| 38 |
+
GSM899070,
|
| 39 |
+
GSM899071,
|
| 40 |
+
GSM899072,
|
| 41 |
+
GSM899073,
|
| 42 |
+
GSM899074,1.0
|
| 43 |
+
GSM899075,1.0
|
| 44 |
+
GSM899076,1.0
|
| 45 |
+
GSM899077,1.0
|
| 46 |
+
GSM899078,1.0
|
| 47 |
+
GSM899079,1.0
|
| 48 |
+
GSM899080,1.0
|
| 49 |
+
GSM899081,1.0
|
| 50 |
+
GSM899082,1.0
|
| 51 |
+
GSM899083,1.0
|
| 52 |
+
GSM899084,1.0
|
| 53 |
+
GSM899085,1.0
|
| 54 |
+
GSM899086,1.0
|
| 55 |
+
GSM899087,1.0
|
| 56 |
+
GSM899088,1.0
|
| 57 |
+
GSM899089,1.0
|
| 58 |
+
GSM899090,1.0
|
| 59 |
+
GSM899091,1.0
|
| 60 |
+
GSM899092,1.0
|
| 61 |
+
GSM899093,1.0
|
| 62 |
+
GSM899094,1.0
|
| 63 |
+
GSM899095,1.0
|
| 64 |
+
GSM899096,1.0
|
| 65 |
+
GSM899097,1.0
|
| 66 |
+
GSM899098,1.0
|
| 67 |
+
GSM899099,1.0
|
| 68 |
+
GSM899100,1.0
|
| 69 |
+
GSM899101,1.0
|
| 70 |
+
GSM899102,1.0
|
| 71 |
+
GSM899103,1.0
|
| 72 |
+
GSM899104,1.0
|
| 73 |
+
GSM899105,1.0
|
| 74 |
+
GSM899106,1.0
|
| 75 |
+
GSM899107,1.0
|
| 76 |
+
GSM899108,1.0
|
| 77 |
+
GSM899109,1.0
|
| 78 |
+
GSM899110,1.0
|
| 79 |
+
GSM899111,1.0
|
| 80 |
+
GSM899112,1.0
|
| 81 |
+
GSM899113,1.0
|
| 82 |
+
GSM899114,1.0
|
| 83 |
+
GSM899115,1.0
|
| 84 |
+
GSM899116,1.0
|
| 85 |
+
GSM899117,1.0
|
| 86 |
+
GSM899118,1.0
|
| 87 |
+
GSM899119,1.0
|
| 88 |
+
GSM899120,1.0
|
| 89 |
+
GSM899121,1.0
|
| 90 |
+
GSM899122,1.0
|
| 91 |
+
GSM899123,1.0
|
| 92 |
+
GSM899124,1.0
|
| 93 |
+
GSM899125,1.0
|
| 94 |
+
GSM899126,1.0
|
| 95 |
+
GSM899127,1.0
|
| 96 |
+
GSM899128,1.0
|
| 97 |
+
GSM899129,1.0
|
| 98 |
+
GSM899130,1.0
|
| 99 |
+
GSM899131,1.0
|
| 100 |
+
GSM899132,1.0
|
| 101 |
+
GSM899133,1.0
|
| 102 |
+
GSM899134,1.0
|
| 103 |
+
GSM899135,1.0
|
| 104 |
+
GSM899136,1.0
|
| 105 |
+
GSM899137,1.0
|
| 106 |
+
GSM899138,1.0
|
| 107 |
+
GSM899139,1.0
|
| 108 |
+
GSM899140,1.0
|
| 109 |
+
GSM899141,1.0
|
| 110 |
+
GSM899142,1.0
|
| 111 |
+
GSM899143,1.0
|
| 112 |
+
GSM899144,1.0
|
| 113 |
+
GSM899145,1.0
|
| 114 |
+
GSM899146,1.0
|
| 115 |
+
GSM899147,1.0
|
| 116 |
+
GSM899148,1.0
|
| 117 |
+
GSM899149,1.0
|
| 118 |
+
GSM899150,1.0
|
| 119 |
+
GSM899151,1.0
|
| 120 |
+
GSM899152,1.0
|
| 121 |
+
GSM899153,1.0
|
| 122 |
+
GSM899154,1.0
|
| 123 |
+
GSM899155,1.0
|
| 124 |
+
GSM899156,1.0
|
| 125 |
+
GSM899157,1.0
|
| 126 |
+
GSM899158,1.0
|
| 127 |
+
GSM899159,1.0
|
| 128 |
+
GSM899160,1.0
|
| 129 |
+
GSM899161,0.0
|
| 130 |
+
GSM899162,0.0
|
| 131 |
+
GSM899163,0.0
|
| 132 |
+
GSM899164,0.0
|
| 133 |
+
GSM899165,
|
| 134 |
+
GSM899166,
|
| 135 |
+
GSM899167,1.0
|
| 136 |
+
GSM899168,0.0
|
| 137 |
+
GSM899169,1.0
|
| 138 |
+
GSM899170,
|
| 139 |
+
GSM899171,1.0
|
| 140 |
+
GSM899172,
|
| 141 |
+
GSM899173,0.0
|
| 142 |
+
GSM899174,1.0
|
| 143 |
+
GSM899175,0.0
|
| 144 |
+
GSM899176,
|
| 145 |
+
GSM899177,1.0
|
| 146 |
+
GSM899178,0.0
|
| 147 |
+
GSM899179,1.0
|
| 148 |
+
GSM899180,
|
| 149 |
+
GSM899181,
|
| 150 |
+
GSM899182,1.0
|
| 151 |
+
GSM899183,1.0
|
| 152 |
+
GSM899184,
|
| 153 |
+
GSM899185,0.0
|
| 154 |
+
GSM899186,
|
| 155 |
+
GSM899187,
|
| 156 |
+
GSM899188,1.0
|
| 157 |
+
GSM899189,
|
| 158 |
+
GSM899190,
|
| 159 |
+
GSM899191,1.0
|
| 160 |
+
GSM899192,1.0
|
| 161 |
+
GSM899193,
|
| 162 |
+
GSM899194,1.0
|
| 163 |
+
GSM899195,0.0
|
| 164 |
+
GSM899196,0.0
|
| 165 |
+
GSM899197,1.0
|
| 166 |
+
GSM899198,0.0
|
| 167 |
+
GSM899199,
|
| 168 |
+
GSM899200,0.0
|
| 169 |
+
GSM899201,
|
| 170 |
+
GSM899202,1.0
|
| 171 |
+
GSM899203,0.0
|
| 172 |
+
GSM899204,
|
| 173 |
+
GSM899205,
|
| 174 |
+
GSM899206,
|
| 175 |
+
GSM899207,
|
| 176 |
+
GSM899208,1.0
|
| 177 |
+
GSM899209,1.0
|
| 178 |
+
GSM899210,
|
| 179 |
+
GSM899211,
|
| 180 |
+
GSM899212,0.0
|
| 181 |
+
GSM899213,0.0
|
| 182 |
+
GSM899214,
|
| 183 |
+
GSM899215,0.0
|
| 184 |
+
GSM899216,
|
| 185 |
+
GSM899217,0.0
|
| 186 |
+
GSM899218,1.0
|
| 187 |
+
GSM899219,1.0
|
| 188 |
+
GSM899220,
|
| 189 |
+
GSM899221,0.0
|
| 190 |
+
GSM899222,1.0
|
| 191 |
+
GSM899223,0.0
|
| 192 |
+
GSM899224,0.0
|
| 193 |
+
GSM899225,1.0
|
| 194 |
+
GSM899226,
|
| 195 |
+
GSM899227,
|
| 196 |
+
GSM899228,
|
| 197 |
+
GSM899229,
|
| 198 |
+
GSM899230,
|
| 199 |
+
GSM899231,1.0
|
| 200 |
+
GSM899232,1.0
|
| 201 |
+
GSM899233,
|
| 202 |
+
GSM899234,1.0
|
| 203 |
+
GSM899235,
|
| 204 |
+
GSM899236,0.0
|
| 205 |
+
GSM899237,
|
| 206 |
+
GSM899238,1.0
|
| 207 |
+
GSM899239,0.0
|
| 208 |
+
GSM899240,
|
| 209 |
+
GSM899241,0.0
|
| 210 |
+
GSM899242,1.0
|
| 211 |
+
GSM899243,0.0
|
| 212 |
+
GSM899244,
|
| 213 |
+
GSM899245,1.0
|
| 214 |
+
GSM899246,0.0
|
| 215 |
+
GSM899247,
|
| 216 |
+
GSM899248,
|
| 217 |
+
GSM899249,0.0
|
| 218 |
+
GSM899250,1.0
|
| 219 |
+
GSM899251,0.0
|
| 220 |
+
GSM899252,
|
| 221 |
+
GSM899253,1.0
|
| 222 |
+
GSM899254,1.0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/GSE63379.csv
ADDED
|
@@ -0,0 +1,68 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
|
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|
|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
,Irritable_bowel_syndrome_(IBS)
|
| 2 |
+
GSM1547708,
|
| 3 |
+
GSM1547709,
|
| 4 |
+
GSM1547710,
|
| 5 |
+
GSM1547711,
|
| 6 |
+
GSM1547712,
|
| 7 |
+
GSM1547713,
|
| 8 |
+
GSM1547714,
|
| 9 |
+
GSM1547715,
|
| 10 |
+
GSM1547716,
|
| 11 |
+
GSM1547717,
|
| 12 |
+
GSM1547718,
|
| 13 |
+
GSM1547719,
|
| 14 |
+
GSM1547720,
|
| 15 |
+
GSM1547721,
|
| 16 |
+
GSM1547722,
|
| 17 |
+
GSM1547723,
|
| 18 |
+
GSM1547724,
|
| 19 |
+
GSM1547725,
|
| 20 |
+
GSM1547726,
|
| 21 |
+
GSM1547727,
|
| 22 |
+
GSM1547728,
|
| 23 |
+
GSM1547729,
|
| 24 |
+
GSM1547730,
|
| 25 |
+
GSM1547731,
|
| 26 |
+
GSM1547732,
|
| 27 |
+
GSM1547733,
|
| 28 |
+
GSM1547734,
|
| 29 |
+
GSM1547735,
|
| 30 |
+
GSM1547736,
|
| 31 |
+
GSM1547737,
|
| 32 |
+
GSM1547738,
|
| 33 |
+
GSM1547739,
|
| 34 |
+
GSM1547740,1.0
|
| 35 |
+
GSM1547741,1.0
|
| 36 |
+
GSM1547742,1.0
|
| 37 |
+
GSM1547743,1.0
|
| 38 |
+
GSM1547744,1.0
|
| 39 |
+
GSM1547745,1.0
|
| 40 |
+
GSM1547746,1.0
|
| 41 |
+
GSM1547747,1.0
|
| 42 |
+
GSM1547748,1.0
|
| 43 |
+
GSM1547749,1.0
|
| 44 |
+
GSM1547750,1.0
|
| 45 |
+
GSM1547751,1.0
|
| 46 |
+
GSM1547752,1.0
|
| 47 |
+
GSM1547753,1.0
|
| 48 |
+
GSM1547754,1.0
|
| 49 |
+
GSM1547755,1.0
|
| 50 |
+
GSM1547756,1.0
|
| 51 |
+
GSM1547757,1.0
|
| 52 |
+
GSM1547758,1.0
|
| 53 |
+
GSM1547759,1.0
|
| 54 |
+
GSM1547760,1.0
|
| 55 |
+
GSM1547761,1.0
|
| 56 |
+
GSM1547762,1.0
|
| 57 |
+
GSM1547763,1.0
|
| 58 |
+
GSM1547764,1.0
|
| 59 |
+
GSM1547765,1.0
|
| 60 |
+
GSM1547766,1.0
|
| 61 |
+
GSM1547767,1.0
|
| 62 |
+
GSM1547768,1.0
|
| 63 |
+
GSM1547769,1.0
|
| 64 |
+
GSM1547770,1.0
|
| 65 |
+
GSM1547771,1.0
|
| 66 |
+
GSM1547772,1.0
|
| 67 |
+
GSM1547773,1.0
|
| 68 |
+
GSM1547774,1.0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/GSE66824.csv
ADDED
|
@@ -0,0 +1,67 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
,Irritable_bowel_syndrome_(IBS)
|
| 2 |
+
GSM1632703,1
|
| 3 |
+
GSM1632704,1
|
| 4 |
+
GSM1632705,1
|
| 5 |
+
GSM1632706,1
|
| 6 |
+
GSM1632707,1
|
| 7 |
+
GSM1632708,1
|
| 8 |
+
GSM1632709,1
|
| 9 |
+
GSM1632710,1
|
| 10 |
+
GSM1632711,1
|
| 11 |
+
GSM1632712,1
|
| 12 |
+
GSM1632713,1
|
| 13 |
+
GSM1632714,1
|
| 14 |
+
GSM1632715,1
|
| 15 |
+
GSM1632716,1
|
| 16 |
+
GSM1632717,1
|
| 17 |
+
GSM1632718,1
|
| 18 |
+
GSM1632719,1
|
| 19 |
+
GSM1632720,1
|
| 20 |
+
GSM1632721,1
|
| 21 |
+
GSM1632722,1
|
| 22 |
+
GSM1632723,1
|
| 23 |
+
GSM1632724,1
|
| 24 |
+
GSM1632725,1
|
| 25 |
+
GSM1632726,1
|
| 26 |
+
GSM1632727,1
|
| 27 |
+
GSM1632728,1
|
| 28 |
+
GSM1632729,1
|
| 29 |
+
GSM1632730,1
|
| 30 |
+
GSM1632731,0
|
| 31 |
+
GSM1632732,0
|
| 32 |
+
GSM1632733,0
|
| 33 |
+
GSM1632734,0
|
| 34 |
+
GSM1632735,0
|
| 35 |
+
GSM1632736,0
|
| 36 |
+
GSM1632737,0
|
| 37 |
+
GSM1632738,0
|
| 38 |
+
GSM1632739,0
|
| 39 |
+
GSM1632740,0
|
| 40 |
+
GSM1632741,0
|
| 41 |
+
GSM1632742,0
|
| 42 |
+
GSM1632743,0
|
| 43 |
+
GSM1632744,0
|
| 44 |
+
GSM1632745,0
|
| 45 |
+
GSM1632746,0
|
| 46 |
+
GSM1632747,0
|
| 47 |
+
GSM1632748,0
|
| 48 |
+
GSM1632749,0
|
| 49 |
+
GSM1632750,0
|
| 50 |
+
GSM1632751,0
|
| 51 |
+
GSM1632752,0
|
| 52 |
+
GSM1632753,0
|
| 53 |
+
GSM1632754,0
|
| 54 |
+
GSM1632755,0
|
| 55 |
+
GSM1632756,0
|
| 56 |
+
GSM1632757,0
|
| 57 |
+
GSM1632758,0
|
| 58 |
+
GSM1632759,0
|
| 59 |
+
GSM1632760,0
|
| 60 |
+
GSM1632761,0
|
| 61 |
+
GSM1632762,0
|
| 62 |
+
GSM1632763,0
|
| 63 |
+
GSM1632764,0
|
| 64 |
+
GSM1632765,0
|
| 65 |
+
GSM1632766,0
|
| 66 |
+
GSM1632767,0
|
| 67 |
+
GSM1632768,0
|
output/preprocess/Irritable_bowel_syndrome_(IBS)/clinical_data/TCGA.csv
ADDED
|
@@ -0,0 +1,552 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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| 1 |
+
sampleID,Irritable_bowel_syndrome_(IBS),Age,Gender
|
| 2 |
+
TCGA-3L-AA1B-01,1,61.0,0.0
|
| 3 |
+
TCGA-4N-A93T-01,1,67.0,1.0
|
| 4 |
+
TCGA-4T-AA8H-01,1,42.0,0.0
|
| 5 |
+
TCGA-5M-AAT4-01,1,74.0,1.0
|
| 6 |
+
TCGA-5M-AAT5-01,1,,
|
| 7 |
+
TCGA-5M-AAT6-01,1,40.0,0.0
|
| 8 |
+
TCGA-5M-AATA-01,1,,
|
| 9 |
+
TCGA-5M-AATE-01,1,76.0,1.0
|
| 10 |
+
TCGA-A6-2670-01,1,45.0,1.0
|
| 11 |
+
TCGA-A6-2671-01,1,85.0,1.0
|
| 12 |
+
TCGA-A6-2671-11,0,85.0,1.0
|
| 13 |
+
TCGA-A6-2672-01,1,82.0,0.0
|
| 14 |
+
TCGA-A6-2672-11,0,82.0,0.0
|
| 15 |
+
TCGA-A6-2674-01,1,71.0,1.0
|
| 16 |
+
TCGA-A6-2674-11,0,71.0,1.0
|
| 17 |
+
TCGA-A6-2675-01,1,78.0,1.0
|
| 18 |
+
TCGA-A6-2675-11,0,78.0,1.0
|
| 19 |
+
TCGA-A6-2676-01,1,75.0,0.0
|
| 20 |
+
TCGA-A6-2676-11,0,75.0,0.0
|
| 21 |
+
TCGA-A6-2677-01,1,68.0,0.0
|
| 22 |
+
TCGA-A6-2677-11,0,68.0,0.0
|
| 23 |
+
TCGA-A6-2678-01,1,43.0,0.0
|
| 24 |
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TCGA-A6-2678-11,0,43.0,0.0
|
| 25 |
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TCGA-A6-2679-01,1,73.0,0.0
|
| 26 |
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TCGA-A6-2679-11,0,73.0,0.0
|
| 27 |
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TCGA-A6-2680-01,1,72.0,0.0
|
| 28 |
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TCGA-A6-2680-11,0,72.0,0.0
|
| 29 |
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TCGA-A6-2681-01,1,73.0,0.0
|
| 30 |
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TCGA-A6-2681-11,0,73.0,0.0
|
| 31 |
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TCGA-A6-2682-01,1,70.0,1.0
|
| 32 |
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TCGA-A6-2682-11,0,70.0,1.0
|
| 33 |
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TCGA-A6-2683-01,1,57.0,0.0
|
| 34 |
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TCGA-A6-2683-11,0,57.0,0.0
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| 35 |
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TCGA-A6-2684-01,1,75.0,0.0
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| 36 |
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TCGA-A6-2684-11,0,75.0,0.0
|
| 37 |
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TCGA-A6-2685-01,1,48.0,0.0
|
| 38 |
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TCGA-A6-2685-11,0,48.0,0.0
|
| 39 |
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TCGA-A6-2686-01,1,81.0,0.0
|
| 40 |
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TCGA-A6-2686-11,0,81.0,0.0
|
| 41 |
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TCGA-A6-3807-01,1,53.0,0.0
|
| 42 |
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TCGA-A6-3807-11,0,53.0,0.0
|
| 43 |
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TCGA-A6-3808-01,1,73.0,1.0
|
| 44 |
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TCGA-A6-3808-11,0,73.0,1.0
|
| 45 |
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TCGA-A6-3809-01,1,71.0,0.0
|
| 46 |
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TCGA-A6-3809-11,0,71.0,0.0
|
| 47 |
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TCGA-A6-3810-01,1,62.0,1.0
|
| 48 |
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TCGA-A6-3810-11,0,62.0,1.0
|
| 49 |
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TCGA-A6-4105-01,1,79.0,1.0
|
| 50 |
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TCGA-A6-4107-01,1,57.0,0.0
|
| 51 |
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TCGA-A6-4107-11,0,57.0,0.0
|
| 52 |
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TCGA-A6-5656-01,1,74.0,1.0
|
| 53 |
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TCGA-A6-5657-01,1,65.0,1.0
|
| 54 |
+
TCGA-A6-5659-01,1,82.0,1.0
|
| 55 |
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TCGA-A6-5659-11,0,82.0,1.0
|
| 56 |
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TCGA-A6-5660-01,1,73.0,1.0
|
| 57 |
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TCGA-A6-5661-01,1,80.0,0.0
|
| 58 |
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TCGA-A6-5662-01,1,46.0,1.0
|
| 59 |
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TCGA-A6-5662-11,0,46.0,1.0
|
| 60 |
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TCGA-A6-5664-01,1,80.0,1.0
|
| 61 |
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TCGA-A6-5665-01,1,84.0,0.0
|
| 62 |
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TCGA-A6-5665-11,0,84.0,0.0
|
| 63 |
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TCGA-A6-5666-01,1,78.0,1.0
|
| 64 |
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TCGA-A6-5667-01,1,40.0,0.0
|
| 65 |
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TCGA-A6-5667-11,0,40.0,0.0
|
| 66 |
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TCGA-A6-6137-01,1,55.0,1.0
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| 67 |
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TCGA-A6-6138-01,1,61.0,1.0
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| 68 |
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TCGA-A6-6140-01,1,62.0,1.0
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| 69 |
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TCGA-A6-6141-01,1,31.0,1.0
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| 70 |
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TCGA-A6-6142-01,1,56.0,0.0
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| 71 |
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TCGA-A6-6648-01,1,56.0,1.0
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| 72 |
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TCGA-A6-6649-01,1,66.0,1.0
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| 73 |
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TCGA-A6-6650-01,1,69.0,0.0
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| 74 |
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TCGA-A6-6651-01,1,55.0,0.0
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| 75 |
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TCGA-A6-6652-01,1,59.0,1.0
|
| 76 |
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TCGA-A6-6653-01,1,82.0,1.0
|
| 77 |
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TCGA-A6-6654-01,1,65.0,0.0
|
| 78 |
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TCGA-A6-6780-01,1,74.0,1.0
|
| 79 |
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TCGA-A6-6781-01,1,43.0,1.0
|
| 80 |
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TCGA-A6-6782-01,1,82.0,1.0
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| 81 |
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TCGA-A6-A565-01,1,34.0,0.0
|
| 82 |
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TCGA-A6-A566-01,1,55.0,0.0
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| 83 |
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TCGA-A6-A567-01,1,56.0,1.0
|
| 84 |
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TCGA-A6-A56B-01,1,57.0,1.0
|
| 85 |
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TCGA-A6-A5ZU-01,1,59.0,1.0
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| 86 |
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TCGA-AA-3488-01,1,58.0,1.0
|
| 87 |
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TCGA-AA-3488-11,0,58.0,1.0
|
| 88 |
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TCGA-AA-3489-01,1,75.0,1.0
|
| 89 |
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TCGA-AA-3489-11,0,75.0,1.0
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| 90 |
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TCGA-AA-3492-01,1,90.0,0.0
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| 91 |
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TCGA-AA-3492-11,0,90.0,0.0
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| 92 |
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TCGA-AA-3494-01,1,55.0,1.0
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| 93 |
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TCGA-AA-3494-11,0,55.0,1.0
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| 94 |
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TCGA-AA-3495-01,1,79.0,1.0
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| 95 |
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TCGA-AA-3495-11,0,79.0,1.0
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| 96 |
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TCGA-AA-3496-01,1,83.0,0.0
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| 97 |
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TCGA-AA-3496-11,0,83.0,0.0
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| 98 |
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TCGA-AA-3502-01,1,73.0,1.0
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| 99 |
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TCGA-AA-3502-11,0,73.0,1.0
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| 100 |
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TCGA-AA-3506-01,1,77.0,1.0
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| 101 |
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TCGA-AA-3506-11,0,77.0,1.0
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| 102 |
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TCGA-AA-3509-01,1,54.0,0.0
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| 103 |
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TCGA-AA-3509-11,0,54.0,0.0
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| 104 |
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TCGA-AA-3510-01,1,70.0,1.0
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| 105 |
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TCGA-AA-3510-11,0,70.0,1.0
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| 106 |
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TCGA-AA-3511-01,1,64.0,1.0
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| 107 |
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TCGA-AA-3511-11,0,64.0,1.0
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| 108 |
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TCGA-AA-3514-01,1,81.0,0.0
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| 109 |
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TCGA-AA-3514-11,0,81.0,0.0
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| 110 |
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TCGA-AA-3516-01,1,74.0,0.0
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| 111 |
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TCGA-AA-3516-11,0,74.0,0.0
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| 112 |
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TCGA-AA-3517-01,1,60.0,1.0
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| 113 |
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TCGA-AA-3517-11,0,60.0,1.0
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| 114 |
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TCGA-AA-3518-01,1,81.0,0.0
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| 115 |
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TCGA-AA-3518-11,0,81.0,0.0
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| 116 |
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TCGA-AA-3519-01,1,63.0,1.0
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| 117 |
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TCGA-AA-3519-11,0,63.0,1.0
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| 118 |
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TCGA-AA-3520-01,1,86.0,0.0
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| 119 |
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TCGA-AA-3520-11,0,86.0,0.0
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| 120 |
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TCGA-AA-3521-01,1,87.0,1.0
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| 121 |
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TCGA-AA-3521-11,0,87.0,1.0
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| 122 |
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TCGA-AA-3522-01,1,67.0,1.0
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| 123 |
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TCGA-AA-3522-11,0,67.0,1.0
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| 124 |
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TCGA-AA-3524-01,1,85.0,1.0
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| 125 |
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TCGA-AA-3524-11,0,85.0,1.0
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| 126 |
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TCGA-AA-3525-01,1,90.0,1.0
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| 127 |
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TCGA-AA-3525-11,0,90.0,1.0
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| 128 |
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TCGA-AA-3526-01,1,57.0,1.0
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| 129 |
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TCGA-AA-3526-11,0,57.0,1.0
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| 130 |
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TCGA-AA-3527-01,1,90.0,0.0
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| 131 |
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TCGA-AA-3527-11,0,90.0,0.0
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| 132 |
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TCGA-AA-3529-01,1,78.0,0.0
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| 133 |
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TCGA-AA-3529-11,0,78.0,0.0
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| 134 |
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TCGA-AA-3530-01,1,80.0,1.0
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| 135 |
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TCGA-AA-3531-01,1,75.0,0.0
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TCGA-AA-3531-11,0,75.0,0.0
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| 137 |
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TCGA-AA-3532-01,1,63.0,1.0
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| 138 |
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TCGA-AA-3532-11,0,63.0,1.0
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| 139 |
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TCGA-AA-3534-01,1,78.0,0.0
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output/preprocess/Irritable_bowel_syndrome_(IBS)/cohort_info.json
ADDED
|
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{
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|
| 71 |
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| 72 |
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output/preprocess/Irritable_bowel_syndrome_(IBS)/gene_data/GSE138297.csv
ADDED
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ADDED
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output/preprocess/Irritable_bowel_syndrome_(IBS)/gene_data/GSE36701.csv
ADDED
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