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d1292d8 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 | """Template-backed digestion path for the Anton Paar Multiwave 7101 (24 x 8 mL rack) thermal runtime.
Library: assets/reactions/multiwave_7101_digestion_library/templates.json (EPA SW-846 3051A/3052/3015A programs,
NIST SRM certified mass fractions, EPA 3051A measured recoveries, reagent properties, IAPWS water saturation curve).
Adds three agent capabilities to ``basic40_runtime_thermal.Multiwave7101Session`` (hooked in the runtime file):
* ``template.read`` public reference lookup by template id; reveals nothing about any loaded vessel.
* ``digestion.load_template`` declare the contents of one rack vessel (reference material id, sample mass, acid
volume, EPA method id); door open and heating off, vessel present in the slot.
* ``digestion.evaluate`` compare the host-tracked thermal history (indicated temperature, shared lumped node)
with the method program (window, ramp, hold) and list the analytes expected in the
digest from the certificate / EPA recovery tables.
The lumped thermal model itself is unchanged: loading template contents does not alter heat capacity or power.
The host step hook ``track_step`` integrates time-in-window exactly by bisection on the runtime's own closed-form
``_advance`` (the single-node trajectory is monotone within one host step).
"""
from __future__ import annotations
import copy
import json
import math
from functools import lru_cache
from typing import Any
try: # scripts/ on sys.path (tests, Matterix runtime bridge)
from template_library import index_by_id, library_sha256, load_library, provenance
except ImportError: # imported as scripts.basic40_templates.*
from scripts.template_library import index_by_id, library_sha256, load_library, provenance
TEMPLATE_REL = "assets/reactions/multiwave_7101_digestion_library/templates.json"
RACK24_FILL_LIMIT_M3 = 5e-6 # manufacturer brochure 2026 PDF p.5, Rack 24 column (contract source manufacturer_brochure_2026)
RACK24_SAMPLE_LIMIT_KG = 2e-4 # same table: 0.2 g sample for Rack 24
RACK24_VIAL_VOLUME_M3 = 8e-6
CAPABILITIES = ("template.read", "digestion.load_template", "digestion.evaluate")
STATE_KEY = "template_digestion"
SOLID_MATRIX_TO_METHOD = { # library CRM matrix -> matrix words used in the EPA scope sections
"soil": ("soils",), "marine_sediment": ("sediments",), "estuarine_sediment": ("sediments",), "river_sediment": ("sediments",),
"plant_leaves": ("biological tissues",), "animal_tissue": ("biological tissues",), "oil": ("oils",),
}
RECOVERY_MATERIAL_MATRIX = {"nist_srm_2704": "river_sediment", "nist_srm_4355": "soil", "nist_srm_1084a": "oil"}
SYNTHETIC_PARTS = ["thermal history: shared lumped single-node surrogate of the Multiwave 7101 runtime (assumed absorbed power/UA)",
"digest volume assumed equal to the declared acid volume (sample water, evaporation and dilution not modelled)"]
LIMITATIONS = [
"No digestion kinetics: an analyte is listed as expected only after the method hold time has been met in the method window; partial programs return null amounts.",
"Certified values are total mass fractions; EPA 3051A/3015A are leaching methods. Expected 3051A amounts use the EPA 3051A Table 1-3 measured means where they exist, else the certificate CLP study median (USEPA 200.7/3050B hot-plate leach, a proxy), else null.",
"Rack 24 (8 mL vials, 5 mL fill, 0.2 g sample) is a scale-down of EPA methods written for >=45 mL vessels and 0.5 g; vessel volume and sample mass deviations are reported, not hidden.",
"Shared cavity temperature: all 24 vessels see the same simulated node; no per-vessel heating, pressure, venting or acid-vapour model; the water saturation curve is only a lower bound for vessel pressure.",
"Elemental volatility (Hg, As, Se, B with HF), insoluble fluorides and incomplete matrix destruction are not modelled.",
]
# ---------------------------------------------------------------- library access ------------------------------------
@lru_cache(maxsize=None)
def records() -> dict[str, dict]:
return index_by_id(TEMPLATE_REL)
@lru_cache(maxsize=None)
def materials() -> dict[str, dict]:
"""material_id -> {name, matrix, analytes: {symbol: crm record}, recoveries: {symbol: method_recovery record}}."""
out: dict[str, dict] = {}
for rec in load_library(TEMPLATE_REL)["templates"]:
if rec["record_type"] == "crm_certified_value":
m = out.setdefault(rec["material_id"], {"name": rec["material_name"], "matrix": rec["matrix"], "analytes": {}, "recoveries": {}})
m["analytes"][rec["analyte"]] = rec
elif rec["record_type"] == "method_recovery":
m = out.setdefault(rec["material_id"], {"name": rec["material_name"], "matrix": RECOVERY_MATERIAL_MATRIX.get(rec["material_id"]),
"analytes": {}, "recoveries": {}})
m["recoveries"][rec["analyte"]] = rec
return out
def methods() -> dict[str, dict]:
return {k: v for k, v in records().items() if v["record_type"] == "digestion_method"}
def _water_curve() -> dict | None:
return records().get("water_saturation_pressure_373_573K")
def water_saturation_pressure_pa(temperature_k: float) -> float | None:
"""Linear interpolation in the cached IAPWS-95 (NIST WebBook) table, 373.15-573.15 K; None outside."""
c = _water_curve()
if not c:
return None
ts, ps = c["temperature_K"], c["saturation_pressure_Pa"]
if not ts[0] <= temperature_k <= ts[-1]:
return None
for i in range(1, len(ts)):
if temperature_k <= ts[i]:
f = (temperature_k - ts[i - 1]) / (ts[i] - ts[i - 1])
return ps[i - 1] + f * (ps[i] - ps[i - 1])
return ps[-1]
# ---------------------------------------------------------------- schemas ------------------------------------------
def _obj(props: dict, required: list | None = None) -> dict:
return {"type": "object", "properties": props, "required": list(props) if required is None else required, "additionalProperties": False}
def _num(unit: str, minimum=None, maximum=None, nullable=False) -> dict:
s: dict[str, Any] = {"type": ["number", "null"] if nullable else "number", "x-unit": unit}
if minimum is not None:
s["minimum"] = minimum
if maximum is not None:
s["maximum"] = maximum
return s
TEXT = {"type": "string"}
NTEXT = {"type": ["string", "null"]}
BOOL = {"type": "boolean"}
NBOOL = {"type": ["boolean", "null"]}
SLOT = {"type": "integer", "minimum": 0, "maximum": 23, "x-unit": "1"}
ANALYTE = _obj({
"analyte": TEXT, "value_category": TEXT,
"certified_mass_fraction": _num("kg/kg", 0, 1, nullable=True), "expanded_uncertainty": _num("kg/kg", 0, 1, nullable=True),
"basis": TEXT, "expected_mass_fraction": _num("kg/kg", 0, 1, nullable=True), "expected_mass_kg": _num("kg", 0, nullable=True),
"expected_concentration_kg_m3": _num("kg/m^3", 0, nullable=True), "evidence": TEXT, "source": TEXT, "locator": TEXT, "note": NTEXT})
PROGRAM = _obj({
"target_temperature_K": _num("K"), "temperature_tolerance_K": _num("K"), "window_low_K": _num("K"), "window_high_K": _num("K"),
"setpoint_K": _num("K"), "setpoint_in_window": BOOL,
"required_ramp_s": _num("s"), "ramp_tolerance_s": _num("s", nullable=True), "ramp_time_max_s": _num("s", nullable=True),
"heating_started_s": _num("s", nullable=True), "entered_window_s": _num("s", nullable=True), "measured_ramp_s": _num("s", nullable=True),
"ramp_within_spec": NBOOL, "required_hold_s": _num("s"), "hold_in_window_s": _num("s", 0), "left_window_after_entry": BOOL,
"max_indicated_temperature_K": _num("K"), "exceeded_window": BOOL, "program_complete": BOOL,
"water_saturation_pressure_at_target_Pa": _num("Pa", 0, nullable=True), "reagents_boiling_below_target": {"type": "array", "items": TEXT},
"synthetic": BOOL})
EVALUATE_OUT = _obj({
"slot_index": SLOT, "material_id": TEXT, "material_name": TEXT, "matrix": TEXT, "method_id": TEXT, "method_scope": TEXT,
"matrix_in_method_scope": BOOL, "sample_mass_kg": _num("kg", 0), "acid_volume_m3": _num("m^3", 0),
"acid_to_sample_ratio_m3_kg": _num("m^3/kg", 0), "method_acid_to_sample_ratio_m3_kg": _num("m^3/kg", 0, nullable=True),
"method_deviations": {"type": "array", "items": TEXT}, "method_conformant": BOOL, "program": PROGRAM,
"expected_analytes": {"type": "array", "items": ANALYTE}, "status": {"type": "string", "enum": ["complete", "incomplete_program"]},
"template_source": TEXT, "library_sha256": TEXT, "evidence": TEXT, "synthetic": BOOL, "synthetic_parts": {"type": "array", "items": TEXT},
"limitations": {"type": "array", "items": TEXT}})
READ_OUT = _obj({"template_id": TEXT, "record_type": TEXT, "name": TEXT, "cas": NTEXT, "evidence": TEXT, "source": TEXT,
"locator": NTEXT, "accessed": TEXT, "record_json": TEXT, "template_source": TEXT, "library_sha256": TEXT})
LOAD_IN = _obj({"slot_index": SLOT, "material_id": TEXT, "method_id": TEXT,
"sample_mass_kg": _num("kg", 1e-6, RACK24_SAMPLE_LIMIT_KG), "acid_volume_m3": _num("m^3", 1e-7, RACK24_FILL_LIMIT_M3)})
LOAD_OUT = _obj({"slot_index": SLOT, "material_id": TEXT, "method_id": TEXT, "method_scope": TEXT, "sample_mass_kg": _num("kg"),
"acid_volume_m3": _num("m^3"), "method_deviations": {"type": "array", "items": TEXT}})
ERRORS = {
"UNKNOWN_REFERENCE": "template_id, material_id or method_id is not in the digestion library.",
"METHOD_MATRIX_MISMATCH": "Method is written for aqueous samples (EPA 3015A) but the reference material is a solid.",
"TEMPLATE_SAMPLE_REQUIRED": "No template contents declared for this rack slot.",
}
def capability_specs() -> dict[str, dict]:
"""Runtime-metadata entries in the same shape as export_multiwave_7101_metadata() capabilities."""
load_pre = [{"description_zh": "门打开且微波加热关闭(装样时)。", "state_ids": ["door.closed", "microwave.enabled"], "enforced_by": "adapter",
"check": "not door.closed and not microwave.enabled"},
{"description_zh": "该槽位已放入消解管(rack.set_slot occupied=True)。", "state_ids": ["rack.occupied_slots"], "enforced_by": "adapter",
"check": "rack.occupied_slots[slot_index]"}]
eval_pre = [{"description_zh": "该槽位已声明模板内容。", "state_ids": [], "enforced_by": "adapter", "check": "slot has digestion.load_template contents"}]
common = {"availability": "implemented", "visibility": "agent", "scene_backend_required": False,
"completion_criterion_zh": "同步返回;不推进宿主时钟,不改变热状态。"}
return {
"template.read": {**common, "kind": "query", "description_zh": "按模板ID读取公开参考记录(EPA方法程序、NIST SRM认证值、试剂性质);不透露任何消解管内容。",
"component_ids": ["controller"], "input_schema": _obj({"template_id": TEXT}), "output_schema": READ_OUT,
"example_arguments": [{"template_id": "epa_3051a_hno3"}], "observes": [], "state_effects": [], "preconditions": [],
"binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='template.read', arguments={'template_id': ...}, request_id=...)"},
"digestion.load_template": {**common, "kind": "configuration", "description_zh": "声明某槽消解管的内容:标准物质ID、称样量、酸体积与EPA方法ID;只记录过程模板,不改热容或功率。",
"component_ids": ["rack"], "input_schema": LOAD_IN, "output_schema": LOAD_OUT,
"example_arguments": [{"slot_index": 0, "material_id": "nist_srm_2711a", "method_id": "epa_3051a_hno3", "sample_mass_kg": 0.0002, "acid_volume_m3": 4e-06}],
"observes": [], "state_effects": [], "preconditions": load_pre,
"binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='digestion.load_template', arguments=..., request_id=...)"},
"digestion.evaluate": {**common, "kind": "analysis", "description_zh": "对照方法温窗、升温与保持时间检查已运行的显示温度历史,并按证书/EPA回收率表列出消解液中预期的分析元素。",
"component_ids": ["controller", "rack"], "input_schema": _obj({"slot_index": SLOT}), "output_schema": EVALUATE_OUT,
"example_arguments": [{"slot_index": 0}], "observes": ["thermal.indicated_temperature_k", "thermal.target_k"], "state_effects": [],
"preconditions": eval_pre,
"binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='digestion.evaluate', arguments={'slot_index': 0}, request_id=...)"},
}
# ---------------------------------------------------------------- capability handlers -------------------------------
class Rejected(Exception):
def __init__(self, code: str):
super().__init__(code)
self.code = code
def _finite(x) -> bool:
return type(x) in (int, float) and math.isfinite(x)
def template_read(args: dict) -> dict:
tid = args.get("template_id")
if not isinstance(tid, str):
raise Rejected("INVALID_ARGUMENT")
rec = records().get(tid)
if rec is None:
raise Rejected("UNKNOWN_REFERENCE")
prov = provenance(TEMPLATE_REL, rec)
return {"template_id": tid, "record_type": rec["record_type"], "name": rec.get("name") or tid, "cas": rec.get("cas"),
"evidence": rec.get("evidence") or "", "source": rec.get("source") or "", "locator": rec.get("locator"),
"accessed": rec.get("accessed") or "", "record_json": json.dumps(rec, ensure_ascii=False, sort_keys=True),
"template_source": prov["template_source"], "library_sha256": prov["library_sha256"]}
def _method_volume(method: dict) -> float:
return sum(r.get("volume_m3") or 0.0 for r in method["reagents"])
def _method_ratio(method: dict) -> float | None:
mass = (method.get("max_sample_mass_kg") or {})
solid = mass.get("soils_sediments_sludges") or mass.get("soils_ash_sediments_sludges_siliceous_wastes")
return _method_volume(method) / solid if solid else None
def plan(args: dict) -> dict:
"""Validate digestion.load_template arguments; returns the slot record (no state is touched here)."""
slot, mid, meth, mass, vol = (args.get(k) for k in ("slot_index", "material_id", "method_id", "sample_mass_kg", "acid_volume_m3"))
if type(slot) is not int or not 0 <= slot <= 23 or not isinstance(mid, str) or not isinstance(meth, str):
raise Rejected("INVALID_ARGUMENT")
if not _finite(mass) or not 1e-6 <= mass <= RACK24_SAMPLE_LIMIT_KG or not _finite(vol) or not 1e-7 <= vol <= RACK24_FILL_LIMIT_M3:
raise Rejected("INVALID_ARGUMENT")
if mid not in materials() or meth not in methods():
raise Rejected("UNKNOWN_REFERENCE")
method, material = methods()[meth], materials()[mid]
if method.get("sample_volume_m3") is not None: # EPA 3015A: aqueous samples only
raise Rejected("METHOD_MATRIX_MISMATCH")
deviations = []
min_vol = (method.get("vessel_requirements") or {}).get("min_internal_volume_m3")
if min_vol and RACK24_VIAL_VOLUME_M3 < min_vol:
deviations.append(f"vessel 8 mL below method minimum internal volume {min_vol * 1e6:g} mL (Rack 24 scale-down)")
ratio, method_ratio = vol / mass, _method_ratio(method)
if method_ratio and ratio < method_ratio * (1 - 1e-9):
deviations.append(f"acid/sample ratio {ratio:.4g} m^3/kg below method {method_ratio:.4g} m^3/kg")
scope_words = SOLID_MATRIX_TO_METHOD.get(material["matrix"], ())
if not any(w in method.get("matrices", []) for w in scope_words):
deviations.append(f"matrix '{material['matrix']}' not listed in {method.get('method', meth)} scope")
return {"slot_index": slot, "material_id": mid, "method_id": meth, "sample_mass_kg": float(mass), "acid_volume_m3": float(vol),
"method_deviations": deviations, "heating_started_s": None, "entered_window_s": None, "hold_in_window_s": 0.0,
"left_window_after_entry": False, "max_indicated_temperature_K": None, "exceeded_window": False}
def load_result(rec: dict) -> dict:
return {"slot_index": rec["slot_index"], "material_id": rec["material_id"], "method_id": rec["method_id"],
"method_scope": methods()[rec["method_id"]]["scope"], "sample_mass_kg": rec["sample_mass_kg"],
"acid_volume_m3": rec["acid_volume_m3"], "method_deviations": list(rec["method_deviations"])}
def _window(method: dict) -> tuple[float, float]:
p = method["program"]
return p["target_temperature_K"] - p["temperature_tolerance_K"], p["target_temperature_K"] + p["temperature_tolerance_K"]
def _expected(material: dict, method: dict, rec: dict, complete: bool) -> list[dict]:
out = []
mass, vol, scope, mid = rec["sample_mass_kg"], rec["acid_volume_m3"], method["scope"], rec["method_id"]
symbols = sorted(set(material["analytes"]) | set(material["recoveries"]))
for sym in symbols:
crm, recov = material["analytes"].get(sym), material["recoveries"].get(sym)
if crm is not None:
total, unc, cat, src, loc = crm["value"], crm.get("expanded_uncertainty"), crm["value_category"], crm["source"], crm.get("locator") or ""
else:
t = recov["results"]["total"]
total, unc, cat, src, loc = t["mean"], t.get("uncertainty"), t.get("value_category") or "certified", recov["source"], recov.get("locator") or ""
frac, basis, evidence, note = None, "", "measured", None
if scope == "total":
frac, basis = total, "certified_total (method claims total decomposition)"
elif recov is not None and mid in recov["results"]:
frac, basis, evidence = recov["results"][mid]["mean"], f"EPA 3051A measured mean ({mid})", "measured_literature"
src, loc = recov["source"], recov.get("locator") or ""
elif crm is not None and crm.get("leachable"):
key, leach = next(iter(crm["leachable"].items()))
frac, basis, evidence = leach["median"], f"leachable proxy: {key} median", "measured_literature"
note = "hot-plate CLP leach (USEPA 200.7/3050B), used as a proxy for microwave 3051A (3051A Sec. 1.1 mimics 3050)"
loc = f"{loc}; {leach.get('source_locator', '')}"
else:
basis, note = "not_documented", "acid-leachable fraction not documented for this material/method; certified total is an upper bound"
if not complete:
note = "program incomplete: hold time in method window not reached" + (f"; {note}" if note else "")
exp_frac = frac if complete else None
out.append({"analyte": sym, "value_category": cat, "certified_mass_fraction": total, "expanded_uncertainty": unc, "basis": basis,
"expected_mass_fraction": exp_frac, "expected_mass_kg": None if exp_frac is None else exp_frac * mass,
"expected_concentration_kg_m3": None if exp_frac is None else exp_frac * mass / vol,
"evidence": evidence, "source": src, "locator": loc, "note": note})
return out
def evaluate(rec: dict, state: dict) -> dict:
method, material = methods()[rec["method_id"]], materials()[rec["material_id"]]
p = method["program"]
lo, hi = _window(method)
complete = rec["hold_in_window_s"] >= p["hold_time_s"] - 1e-9
ramp = None if rec["entered_window_s"] is None or rec["heating_started_s"] is None else rec["entered_window_s"] - rec["heating_started_s"]
if ramp is None:
ramp_ok = None
elif p.get("ramp_tolerance_s") is not None:
ramp_ok = abs(ramp - p["ramp_time_s"]) <= p["ramp_tolerance_s"] + 1e-9
else:
ramp_ok = ramp <= (p.get("ramp_time_max_s") or p["ramp_time_s"]) + 1e-9
setpoint = float(state["thermal.target_k"])
boiling = []
for reag in method["reagents"]:
r = records().get(reag["reagent_id"]) or {}
bp = (r.get("values") or {}).get("azeotrope_boiling_point_K") or (r.get("values") or {}).get("boiling_point_K")
if bp is not None and bp < p["target_temperature_K"]:
boiling.append(f"{reag['reagent_id']} ({bp:.2f} K)")
deviations = list(rec["method_deviations"])
if not lo <= setpoint <= hi:
deviations.append(f"setpoint {setpoint:.2f} K outside method window {lo:.2f}-{hi:.2f} K")
if ramp_ok is False:
deviations.append(f"ramp {ramp:.1f} s outside method {p['ramp_time_s']:.0f} s spec")
if rec["exceeded_window"]:
deviations.append("indicated temperature exceeded the method window")
if rec["left_window_after_entry"]:
deviations.append("temperature left the window after first entry (hold interrupted)")
max_t = rec["max_indicated_temperature_K"] if rec["max_indicated_temperature_K"] is not None else float(state["thermal.indicated_temperature_k"])
prov = provenance(TEMPLATE_REL, method)
return {
"slot_index": rec["slot_index"], "material_id": rec["material_id"], "material_name": material["name"], "matrix": material["matrix"] or "",
"method_id": rec["method_id"], "method_scope": method["scope"],
"matrix_in_method_scope": any(w in method.get("matrices", []) for w in SOLID_MATRIX_TO_METHOD.get(material["matrix"], ())),
"sample_mass_kg": rec["sample_mass_kg"], "acid_volume_m3": rec["acid_volume_m3"],
"acid_to_sample_ratio_m3_kg": rec["acid_volume_m3"] / rec["sample_mass_kg"], "method_acid_to_sample_ratio_m3_kg": _method_ratio(method),
"method_deviations": deviations, "method_conformant": complete and not deviations,
"program": {"target_temperature_K": p["target_temperature_K"], "temperature_tolerance_K": p["temperature_tolerance_K"], "window_low_K": lo,
"window_high_K": hi, "setpoint_K": setpoint, "setpoint_in_window": lo <= setpoint <= hi,
"required_ramp_s": p["ramp_time_s"], "ramp_tolerance_s": p.get("ramp_tolerance_s"), "ramp_time_max_s": p.get("ramp_time_max_s"),
"heating_started_s": rec["heating_started_s"], "entered_window_s": rec["entered_window_s"], "measured_ramp_s": ramp,
"ramp_within_spec": ramp_ok, "required_hold_s": p["hold_time_s"], "hold_in_window_s": rec["hold_in_window_s"],
"left_window_after_entry": rec["left_window_after_entry"], "max_indicated_temperature_K": max_t,
"exceeded_window": rec["exceeded_window"], "program_complete": complete,
"water_saturation_pressure_at_target_Pa": water_saturation_pressure_pa(p["target_temperature_K"]),
"reagents_boiling_below_target": boiling, "synthetic": True},
"expected_analytes": _expected(material, method, rec, complete),
"status": "complete" if complete else "incomplete_program",
"template_source": TEMPLATE_REL, "library_sha256": prov["library_sha256"],
"evidence": "measured (NIST SRM certificates) / measured_literature (EPA 3051A tables, CLP study, method programs); thermal history simulated",
"synthetic": False, "synthetic_parts": list(SYNTHETIC_PARTS), "limitations": list(LIMITATIONS)}
def handle(cap: str, args: dict, state: dict, contents: dict | None) -> tuple[dict, dict | None]:
"""Return (result, new_contents_or_None). Raises Rejected with a stable code; never mutates its inputs."""
if cap == "template.read":
return template_read(args), None
if cap == "digestion.load_template":
if state["door.closed"] or state["microwave.enabled"]:
raise Rejected("PRECONDITION_FAILED")
rec = plan(args)
if not state["rack.occupied_slots"][rec["slot_index"]]:
raise Rejected("PRECONDITION_FAILED")
new = copy.deepcopy(contents or {})
new[str(rec["slot_index"])] = rec
return load_result(rec), new
if cap == "digestion.evaluate":
slot = args.get("slot_index")
if type(slot) is not int or not 0 <= slot <= 23:
raise Rejected("INVALID_ARGUMENT")
rec = (contents or {}).get(str(slot))
if rec is None:
raise Rejected("TEMPLATE_SAMPLE_REQUIRED")
return evaluate(rec, state), None
raise Rejected("UNKNOWN_CAPABILITY")
# ---------------------------------------------------------------- host step hook -----------------------------------
def _heating(state: dict) -> bool:
return bool(state["power.enabled"] and state["microwave.enabled"] and state["door.closed"] and state["microwave.power_limit_w"] > 0)
def _crossing(advance, before: dict, dt: float, level: float, rising: bool) -> float:
"""Earliest h in [0, dt] with indicated T(h) >= level (rising) or <= level (falling); trajectory monotone."""
def reached(h):
if h <= 0:
t = before["thermal.indicated_temperature_k"]
else:
s = copy.deepcopy(before)
advance(s, h)
t = s["thermal.indicated_temperature_k"]
return t >= level if rising else t <= level
lo, hi = 0.0, dt
if reached(0.0):
return 0.0
for _ in range(64):
mid = 0.5 * (lo + hi)
if reached(mid):
hi = mid
else:
lo = mid
if hi - lo <= 1e-9 * max(1.0, dt):
break
return hi
def track_step(advance, inst: dict, before: dict, t0: float, dt: float) -> None:
"""Update every loaded slot after one host step [t0, t0+dt] (state already advanced in inst['state'])."""
contents = inst.get(STATE_KEY)
if not contents or dt <= 0:
return
after = inst["state"]
T0, T1 = before["thermal.indicated_temperature_k"], after["thermal.indicated_temperature_k"]
heating = _heating(before)
for rec in contents.values():
method = methods()[rec["method_id"]]
lo, hi = _window(method)
hold_done_before = rec["hold_in_window_s"] >= method["program"]["hold_time_s"] - 1e-9
if heating and rec["heating_started_s"] is None:
rec["heating_started_s"] = t0
if T1 >= T0: # rising or flat
if T1 < lo or T0 > hi:
enter = exit_ = None
else:
enter = 0.0 if T0 >= lo else _crossing(advance, before, dt, lo, True)
exit_ = dt if T1 <= hi else _crossing(advance, before, dt, hi + 1e-9, True)
else: # falling
if T0 < lo or T1 > hi:
enter = exit_ = None
else:
enter = 0.0 if T0 <= hi else _crossing(advance, before, dt, hi, False)
exit_ = dt if T1 >= lo else _crossing(advance, before, dt, lo - 1e-9, False)
inside = 0.0 if enter is None else max(0.0, exit_ - enter)
if inside > 0:
if rec["entered_window_s"] is None:
rec["entered_window_s"] = t0 + enter
rec["hold_in_window_s"] += inside
hold_done = rec["hold_in_window_s"] >= method["program"]["hold_time_s"] - 1e-9
if rec["entered_window_s"] is not None and (T1 < lo or T1 > hi) and not (hold_done_before or (hold_done and T1 < lo)):
rec["left_window_after_entry"] = True # left before the hold was complete (normal cool-down afterwards is not flagged)
peak = max(T0, T1)
rec["max_indicated_temperature_K"] = peak if rec["max_indicated_temperature_K"] is None else max(rec["max_indicated_temperature_K"], peak)
if peak > hi:
rec["exceeded_window"] = True
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