Add files using upload-large-folder tool

configs/012_oscillatory_state_space_models_test/env.yml

@@ -0,0 +1,37 @@
+name: 012_oscillatory_state_space_models_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - numpy==1.24.4
+    - packaging==25.0
+    - six==1.17.0
+prefix: /home/lily/yz979/anaconda3/envs/012_oscillatory_state_space_models_test

configs/012_oscillatory_state_space_models_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
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configs/012_oscillatory_state_space_models_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "012_oscillatory_state_space_models_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/012_oscillatory_state_space_models_test",
+  "exported_at": "2026-05-17T04:03:15Z"
+}

configs/012_oscillatory_state_space_models_test/pip-clean.txt

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configs/012_oscillatory_state_space_models_test/pip-freeze.txt

@@ -0,0 +1,443 @@
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+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
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+bitsandbytes==0.43.1
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+blis==0.7.11
+boto3==1.36.0
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+Brotli==1.1.0
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+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
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+chromadb==0.4.15
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+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
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+deepdiff==7.0.1
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+editdistance==0.6.0
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+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
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+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
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+gdown==5.2.0
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+humanfriendly==10.0
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+jmespath==0.10.0
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+kubernetes==29.0.0
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+Levenshtein==0.25.1
+linear-operator==0.4.0
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+litellm-proxy-extras==0.2.19
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+mdtex2html==1.3.0
+mdurl==0.1.2
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+ml-dtypes==0.2.0
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+msgpack-numpy==0.4.3.2
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+multipledispatch==1.0.0
+multiprocess==0.70.16
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+mypy-extensions==1.0.0
+narwhals==1.42.1
+natsort==8.4.0
+nest-asyncio==1.6.0
+netCDF4==1.7.2
+neuroHarmonize==2.4.5
+nh3==0.2.17
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+nltk==3.8.1
+numba==0.58.1
+numexpr==2.8.6
+numpoly==1.0.6
+numpy==1.24.4
+numpydoc==1.1.0
+nvidia-ml-py==12.535.133
+nvitop==1.3.2
+oauthlib==3.2.2
+onnx==1.16.0
+onnxruntime==1.15.1
+openai==1.101.0
+openpyxl==3.0.9
+opentelemetry-api==1.24.0
+opentelemetry-exporter-otlp-proto-common==1.24.0
+opentelemetry-exporter-otlp-proto-grpc==1.24.0
+opentelemetry-proto==1.24.0
+opentelemetry-sdk==1.24.0
+opentelemetry-semantic-conventions==0.45b0
+opt-einsum==3.3.0
+optax==0.1.5
+ordered-set==4.1.0
+orjson==3.10.1
+overrides==7.7.0
+packaging==26.2
+pandas==2.0.3
+pandas-stubs==1.2.0.45
+parsimonious==0.8.1
+pathlib==1.0.1
+patsy==1.0.1
+pdf2image==1.17.0
+pfzy==0.3.4
+PICOS==2.6.1
+pikepdf==8.4.1
+pip-search==0.0.12
+pkgutil_resolve_name==1.3.10
+plac==0.9.6
+plotly==6.3.0
+pluggy==1.5.0
+ply==3.11
+pondpond==1.4.1
+pooch==1.8.2
+portalocker==2.4.0
+posthog==3.5.0
+preshed==3.0.9
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+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+PuLP==3.1.1
+pulsar-client==3.5.0
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+pyarrow-hotfix==0.6
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+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
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+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
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+pytz==2025.2
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configs/023_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/023_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "023_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/023_test",
+  "exported_at": "2026-05-17T04:03:31Z"
+}

configs/023_test/pip-clean.txt

@@ -0,0 +1,450 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
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+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
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+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
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+torchaudio==2.1.2+cu118
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+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
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+wavedrom==2.0.3.post3
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+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/023_test/pip-freeze.txt

@@ -0,0 +1,450 @@
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+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
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+aioprometheus==23.12.0
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+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
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+backports.zoneinfo==0.2.1
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+coverage==7.6.1
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+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scikit-learn==1.3.2
+scipy==1.10.1
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
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+sse-starlette==1.8.2
+starlette==0.44.0
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+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
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+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
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+texttable==1.7.0
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+tifffile==2023.7.10
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+tk==0.1.0
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+toml==0.10.2
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+torch==2.4.1+cpu
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+torchaudio==2.1.2+cu118
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+unstructured-client==0.22.0
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+wandb==0.22.0
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+wavedrom==2.0.3.post3
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+websocket-client==1.8.0
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+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
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+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/027_test/env.yml

@@ -0,0 +1,47 @@
+name: 027_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - filelock==3.13.1
+    - fsspec==2024.6.1
+    - idna==3.10
+    - jinja2==3.1.4
+    - markupsafe==2.1.5
+    - mpmath==1.3.0
+    - networkx==3.0
+    - numpy==1.24.4
+    - packaging==25.0
+    - six==1.17.0
+    - sympy==1.13.3
+    - torch==2.4.1+cpu
+    - typing-extensions==4.12.2
+prefix: /home/lily/yz979/anaconda3/envs/027_test

configs/027_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/027_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "027_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/027_test",
+  "exported_at": "2026-05-17T04:03:33Z"
+}

configs/027_test/pip-clean.txt

@@ -0,0 +1,449 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
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+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
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+fbpca==1.0
+feedparser==6.0.10
+ffmpy==0.3.2
+filelock==3.13.1
+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
+frozenlist==1.4.1
+fschat==0.2.35
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+future==0.18.2
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+get-annotations==0.1.2
+gevent==21.12.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
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+gpytorch==1.10
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+h11==0.14.0
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+httpcore==1.0.5
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+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface_hub==0.36.1
+humanfriendly==10.0
+hyperframe==6.0.1
+icetk==0.0.4
+idna==3.10
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+importlib-metadata==7.0.0
+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
+inquirerpy==0.3.4
+iopath==0.1.10
+isodate==0.7.2
+itsdangerous==2.0.1
+jax==0.4.13
+jaxlib==0.4.13
+jaxtyping==0.2.19
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+jiter==0.9.1
+jmespath==0.10.0
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+jsonschema-specifications==2023.12.1
+kaggle==1.7.4.5
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+kubernetes==29.0.0
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+langchain-community==0.0.34
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+lmdb==1.7.3
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+marisa-trie==1.1.0
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+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+PuLP==3.1.1
+pulsar-client==3.5.0
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1+cpu
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/027_test/pip-freeze.txt

@@ -0,0 +1,449 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
+fastapi-sso==0.16.0
+fastavro==1.9.4
+fastuuid==0.13.5
+fbpca==1.0
+feedparser==6.0.10
+ffmpy==0.3.2
+filelock==3.13.1
+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
+frozenlist==1.4.1
+fschat==0.2.35
+fsspec==2025.3.0
+ftfy==6.0.3
+future==0.18.2
+fuzzywuzzy==0.18.0
+gdown==5.2.0
+geosketch==1.3
+geotorch==0.3.0
+get-annotations==0.1.2
+gevent==21.12.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
+gradio_client==0.16.0
+graphlib_backport==1.1.0
+greenlet==1.1.2
+gunicorn==23.0.0
+h11==0.14.0
+h2==4.1.0
+hf-xet==1.2.0
+hf_transfer==0.1.9
+hpack==4.0.0
+httpcore==1.0.5
+httptools==0.6.1
+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface_hub==0.36.1
+humanfriendly==10.0
+hyperframe==6.0.1
+icetk==0.0.4
+idna==3.10
+igraph==0.11.8
+imageio==2.35.1
+imagesize==1.3.0
+imgaug==0.4.0
+importlib-metadata==7.0.0
+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
+inquirerpy==0.3.4
+iopath==0.1.10
+isodate==0.7.2
+itsdangerous==2.0.1
+jax==0.4.13
+jaxlib==0.4.13
+jaxtyping==0.2.19
+Jinja2==3.1.6
+jiter==0.9.1
+jmespath==0.10.0
+joblib==1.4.2
+jsonnet==0.17.0
+jsonpatch==1.33
+jsonpath-python==1.0.6
+jsonpickle==2.0.0
+jsonschema==4.23.0
+jsonschema-specifications==2023.12.1
+kaggle==1.7.4.5
+Keras-Preprocessing==1.1.2
+kubernetes==29.0.0
+langchain==0.1.16
+langchain-community==0.0.34
+langchain-core==0.1.46
+langchain-experimental==0.0.57
+langchain-text-splitters==0.0.1
+langcodes==3.4.0
+langdetect==1.0.9
+langsmith==0.1.51
+language_data==1.2.0
+layoutparser==0.3.4
+lazy_loader==0.4
+leidenalg==0.10.2
+Levenshtein==0.25.1
+linear-operator==0.4.0
+litellm==1.77.4
+litellm-enterprise==0.1.20
+litellm-proxy-extras==0.2.19
+llama-index==0.9.35
+llvmlite==0.41.1
+lmdb==1.7.3
+lxml==5.2.1
+madoka==0.7.1
+marisa-trie==1.1.0
+Markdown==3.3.6
+markdown-it-py==3.0.0
+markdown2==2.4.13
+markdownify==0.11.6
+MarkupSafe==2.1.5
+marshmallow==3.21.1
+mdtex2html==1.3.0
+mdurl==0.1.2
+metaphor-python==0.1.23
+ml-dtypes==0.2.0
+monotonic==1.6
+mpmath==1.3.0
+mrcfile==1.5.4
+msal==1.36.0
+msal-extensions==1.3.0
+msg-parser==1.2.0
+msgpack==1.0.8
+msgpack-numpy==0.4.3.2
+multidict==6.0.5
+multipledispatch==1.0.0
+multiprocess==0.70.16
+murmurhash==1.0.10
+mypy-extensions==1.0.0
+narwhals==1.42.1
+natsort==8.4.0
+nest-asyncio==1.6.0
+netCDF4==1.7.2
+networkx==3.0
+neuroHarmonize==2.4.5
+nh3==0.2.17
+ninja==1.11.1.1
+nltk==3.8.1
+numba==0.58.1
+numexpr==2.8.6
+numpoly==1.0.6
+numpy==1.24.4
+numpydoc==1.1.0
+nvidia-ml-py==12.535.133
+nvitop==1.3.2
+oauthlib==3.2.2
+onnx==1.16.0
+onnxruntime==1.15.1
+openai==1.101.0
+openpyxl==3.0.9
+opentelemetry-api==1.24.0
+opentelemetry-exporter-otlp-proto-common==1.24.0
+opentelemetry-exporter-otlp-proto-grpc==1.24.0
+opentelemetry-proto==1.24.0
+opentelemetry-sdk==1.24.0
+opentelemetry-semantic-conventions==0.45b0
+opt-einsum==3.3.0
+optax==0.1.5
+ordered-set==4.1.0
+orjson==3.10.1
+overrides==7.7.0
+packaging==26.2
+pandas==2.0.3
+pandas-stubs==1.2.0.45
+parsimonious==0.8.1
+pathlib==1.0.1
+patsy==1.0.1
+pdf2image==1.17.0
+pfzy==0.3.4
+PICOS==2.6.1
+pikepdf==8.4.1
+pip-search==0.0.12
+pkgutil_resolve_name==1.3.10
+plac==0.9.6
+plotly==6.3.0
+pluggy==1.5.0
+ply==3.11
+pondpond==1.4.1
+pooch==1.8.2
+portalocker==2.4.0
+posthog==3.5.0
+preshed==3.0.9
+prettytable==3.11.0
+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+PuLP==3.1.1
+pulsar-client==3.5.0
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1+cpu
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/044_test/env.yml

@@ -0,0 +1,119 @@
+name: 044_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - appdirs=1.4.4
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - ca-certificates=2026.4.22
+  - certifi=2024.2.2
+  - charset-normalizer=3.3.2
+  - cycler=0.12.1
+  - freetype=2.14.1
+  - idna=3.10
+  - joblib=1.4.2
+  - kiwisolver=1.4.4
+  - lcms2=2.17
+  - ld_impl_linux-64=2.44
+  - lerc=4.0.0
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libdeflate=1.24
+  - libffi=3.4.6
+  - libfreetype=2.14.1
+  - libfreetype6=2.14.1
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgfortran=15.1.0
+  - libgfortran-ng=15.1.0
+  - libgfortran5=15.1.0
+  - libgomp=15.1.0
+  - libjpeg-turbo=3.1.0
+  - liblapack=3.9.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libopenblas=0.3.25
+  - libpng=1.6.50
+  - libsqlite=3.50.4
+  - libstdcxx=15.1.0
+  - libstdcxx-ng=15.1.0
+  - libtiff=4.7.1
+  - libuuid=2.41.2
+  - libwebp-base=1.6.0
+  - libxcb=1.17.0
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - matplotlib-base=3.4.3
+  - ncurses=6.5
+  - numpy=1.24.4
+  - openjpeg=2.5.4
+  - openssl=3.6.2
+  - packaging=25.0
+  - pandas=2.0.3
+  - patsy=0.5.6
+  - pillow=10.4.0
+  - pip=22.1.2
+  - pooch=0.6.0
+  - pthread-stubs=0.4
+  - pyparsing=3.1.4
+  - pysocks=1.7.1
+  - python=3.8.20
+  - python-dateutil=2.8.2
+  - python-tzdata=2025.2
+  - python_abi=3.8
+  - pytz=2024.2
+  - readline=8.2
+  - requests=2.32.3
+  - scikit-learn=1.3.2
+  - scipy=1.10.1
+  - seaborn=0.13.2
+  - seaborn-base=0.13.2
+  - setuptools=70.3.0
+  - statsmodels=0.13.5
+  - threadpoolctl=3.3.0
+  - tk=8.6.13
+  - tornado=6.2
+  - urllib3=2.2.1
+  - wheel=0.45.1
+  - xorg-libxau=1.0.12
+  - xorg-libxdmcp=1.1.5
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - zstd=1.5.7
+  - pip:
+    - asttokens==3.0.0
+    - backcall==0.2.0
+    - decorator==5.2.1
+    - executing==2.2.1
+    - filelock==3.13.1
+    - fsspec==2024.6.1
+    - ipdb==0.13.13
+    - ipython==8.12.3
+    - jedi==0.19.2
+    - jinja2==3.1.4
+    - lightning-utilities==0.11.9
+    - markupsafe==2.1.5
+    - matplotlib-inline==0.1.7
+    - mpmath==1.3.0
+    - networkx==3.0
+    - parso==0.8.5
+    - pexpect==4.9.0
+    - pickleshare==0.7.5
+    - ptyprocess==0.7.0
+    - pure-eval==0.2.3
+    - pytorch-lightning==2.4.0
+    - pyyaml==6.0.3
+    - six==1.17.0
+    - stack-data==0.6.3
+    - sympy==1.13.3
+    - torch==2.4.1+cpu
+    - torchmetrics==1.5.2
+    - traitlets==5.14.3
+    - typing-extensions==4.12.2
+    - wcwidth==0.2.14
+prefix: /home/lily/yz979/anaconda3/envs/044_test

configs/044_test/explicit.txt

@@ -0,0 +1,87 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
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+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
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+https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.4-h55fea9a_0.conda#11b3379b191f63139e29c0d19dee24cd
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+https://conda.anaconda.org/conda-forge/noarch/appdirs-1.4.4-pyh9f0ad1d_0.tar.bz2#5f095bc6454094e96f146491fd03633b
+https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.1.0-py38h17151c0_1.conda#7a5a699c8992fc51ef25e980f4502c2a
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+https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda#5cd86562580f274031ede6aa6aa24441
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+https://conda.anaconda.org/conda-forge/noarch/seaborn-base-0.13.2-pyhd8ed1ab_2.conda#b713b116feaf98acdba93ad4d7f90ca1
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configs/044_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "044_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/044_test",
+  "exported_at": "2026-05-17T04:03:53Z"
+}

configs/044_test/pip-clean.txt

@@ -0,0 +1,466 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+asttokens==3.0.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backcall==0.2.0
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
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+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
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+botocore==1.36.26
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+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+decorator==5.2.1
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+executing==2.2.1
+fairseq==0.10.2
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+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
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configs/044_test/pip-freeze.txt

@@ -0,0 +1,478 @@
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+pip-search==0.0.12
+pkgutil_resolve_name==1.3.10
+plac==0.9.6
+plotly==6.3.0
+pluggy==1.5.0
+ply==3.11
+pondpond==1.4.1
+pooch==1.8.2
+portalocker==2.4.0
+posthog==3.5.0
+preshed==3.0.9
+prettytable==3.11.0
+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+ptyprocess==0.7.0
+PuLP==3.1.1
+pulsar-client==3.5.0
+pure_eval==0.2.3
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1724616129934/work
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-lightning==2.4.0
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scikit-learn @ file:///home/conda/feedstock_root/build_artifacts/scikit-learn_1701931997682/work
+scipy @ file:///home/conda/feedstock_root/build_artifacts/scipy-split_1683900206454/work/base/dist/scipy-1.10.1-cp38-cp38-linux_x86_64.whl#sha256=13ab5c17dedeb97a65ba90de1c51475f2d3ae0fe50bc43e9b018cc2943541de4
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+stack-data==0.6.3
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1+cpu
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchmetrics==1.5.2
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+traitlets==5.14.3
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1708239446578/work
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+wcwidth==0.2.14
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/046_test/env.yml

@@ -0,0 +1,68 @@
+name: 046_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - antlr4-python3-runtime==4.9.3
+    - certifi==2026.2.25
+    - filelock==3.16.1
+    - fsspec==2024.3.1
+    - idna==3.10
+    - jinja2==3.1.6
+    - markupsafe==2.1.5
+    - mpmath==1.3.0
+    - networkx==3.1
+    - numpy==1.24.4
+    - nvidia-cublas-cu12==12.9.2.10
+    - nvidia-cuda-cupti-cu12==12.9.79
+    - nvidia-cuda-nvrtc-cu12==12.9.86
+    - nvidia-cuda-runtime-cu12==12.9.79
+    - nvidia-cudnn-cu12==9.1.0.70
+    - nvidia-cufft-cu12==11.4.1.4
+    - nvidia-curand-cu12==10.3.10.19
+    - nvidia-cusparse-cu12==12.5.10.65
+    - nvidia-nccl-cu12==2.20.5
+    - nvidia-nvjitlink-cu12==12.9.86
+    - nvidia-nvtx-cu12==12.9.79
+    - omegaconf==2.3.0
+    - packaging==25.0
+    - platformdirs==4.3.6
+    - protobuf==5.29.6
+    - pyyaml==6.0.3
+    - requests==2.32.4
+    - six==1.17.0
+    - sympy==1.13.3
+    - tensor-parallel==2.0.0
+    - torch==2.4.1
+    - triton==3.0.0
+    - typing-extensions==4.13.2
+    - urllib3==2.2.3
+prefix: /home/lily/yz979/anaconda3/envs/046_test

configs/046_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/046_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "046_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/046_test",
+  "exported_at": "2026-05-17T04:03:51Z"
+}

configs/046_test/pip-clean.txt

@@ -0,0 +1,468 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+antlr4-python3-runtime==4.9.3
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+certifi==2026.2.25
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
+fastapi-sso==0.16.0
+fastavro==1.9.4
+fastuuid==0.13.5
+fbpca==1.0
+feedparser==6.0.10
+ffmpy==0.3.2
+filelock==3.16.1
+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
+frozenlist==1.4.1
+fschat==0.2.35
+fsspec==2025.3.0
+ftfy==6.0.3
+future==0.18.2
+fuzzywuzzy==0.18.0
+gdown==5.2.0
+geosketch==1.3
+geotorch==0.3.0
+get-annotations==0.1.2
+gevent==21.12.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
+gradio_client==0.16.0
+graphlib_backport==1.1.0
+greenlet==1.1.2
+gunicorn==23.0.0
+h11==0.14.0
+h2==4.1.0
+hf-xet==1.2.0
+hf_transfer==0.1.9
+hpack==4.0.0
+httpcore==1.0.5
+httptools==0.6.1
+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface_hub==0.36.1
+humanfriendly==10.0
+hyperframe==6.0.1
+icetk==0.0.4
+idna==3.10
+igraph==0.11.8
+imageio==2.35.1
+imagesize==1.3.0
+imgaug==0.4.0
+importlib-metadata==7.0.0
+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
+inquirerpy==0.3.4
+iopath==0.1.10
+isodate==0.7.2
+itsdangerous==2.0.1
+jax==0.4.13
+jaxlib==0.4.13
+jaxtyping==0.2.19
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+jiter==0.9.1
+jmespath==0.10.0
+joblib==1.4.2
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+jsonpath-python==1.0.6
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+jsonschema-specifications==2023.12.1
+kaggle==1.7.4.5
+Keras-Preprocessing==1.1.2
+kubernetes==29.0.0
+langchain==0.1.16
+langchain-community==0.0.34
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+langchain-experimental==0.0.57
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+langcodes==3.4.0
+langdetect==1.0.9
+langsmith==0.1.51
+language_data==1.2.0
+layoutparser==0.3.4
+lazy_loader==0.4
+leidenalg==0.10.2
+Levenshtein==0.25.1
+linear-operator==0.4.0
+litellm==1.77.4
+litellm-enterprise==0.1.20
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+llama-index==0.9.35
+llvmlite==0.41.1
+lmdb==1.7.3
+lxml==5.2.1
+madoka==0.7.1
+marisa-trie==1.1.0
+Markdown==3.3.6
+markdown-it-py==3.0.0
+markdown2==2.4.13
+markdownify==0.11.6
+MarkupSafe==2.1.5
+marshmallow==3.21.1
+mdtex2html==1.3.0
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+metaphor-python==0.1.23
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+nvidia-cublas-cu12==12.9.2.10
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+nvidia-cuda-runtime-cu12==12.9.79
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+nvidia-cufft-cu12==11.4.1.4
+nvidia-curand-cu12==10.3.10.19
+nvidia-cusparse-cu12==12.5.10.65
+nvidia-ml-py==12.535.133
+nvidia-nccl-cu12==2.20.5
+nvidia-nvjitlink-cu12==12.9.86
+nvidia-nvtx-cu12==12.9.79
+nvitop==1.3.2
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+ply==3.11
+pondpond==1.4.1
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+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
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+torchaudio==2.1.2+cu118
+torchtext==0.4.0
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+transformers==4.46.3
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+tzdata==2024.1
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+umap-learn==0.5.7
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+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
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+unstructured.pytesseract==0.3.12
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+vllm==0.2.7
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+wandb==0.22.0
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+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
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+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/046_test/pip-freeze.txt

@@ -0,0 +1,468 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+antlr4-python3-runtime==4.9.3
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
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+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+certifi==2026.2.25
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
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+coloredlogs==15.0.1
+confection==0.1.4
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+conllu==0.11
+coverage==7.6.1
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+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
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+editdistance==0.6.0
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+equinox==0.10.4
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+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
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+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensor-parallel==2.0.0
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+triton==3.0.0
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
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+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/049_test/env.yml

@@ -0,0 +1,59 @@
+name: 049_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - filelock==3.16.1
+    - fsspec==2025.3.0
+    - jinja2==3.1.6
+    - markupsafe==2.1.5
+    - mpmath==1.3.0
+    - networkx==3.1
+    - numpy==1.24.4
+    - nvidia-cublas-cu12==12.9.2.10
+    - nvidia-cuda-cupti-cu12==12.9.79
+    - nvidia-cuda-nvrtc-cu12==12.9.86
+    - nvidia-cuda-runtime-cu12==12.9.79
+    - nvidia-cudnn-cu12==9.1.0.70
+    - nvidia-cufft-cu12==11.4.1.4
+    - nvidia-curand-cu12==10.3.10.19
+    - nvidia-cusparse-cu12==12.5.10.65
+    - nvidia-nccl-cu12==2.20.5
+    - nvidia-nvjitlink-cu12==12.9.86
+    - nvidia-nvtx-cu12==12.9.79
+    - packaging==25.0
+    - scipy==1.10.1
+    - six==1.17.0
+    - sympy==1.13.3
+    - torch==2.4.1
+    - triton==3.0.0
+    - typing-extensions==4.13.2
+prefix: /home/lily/yz979/anaconda3/envs/049_test

configs/049_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/049_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "049_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/049_test",
+  "exported_at": "2026-05-17T04:03:56Z"
+}

configs/049_test/pip-clean.txt

@@ -0,0 +1,461 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
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+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
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+dm-tree==0.1.8
+dnspython==2.6.1
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+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
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+fbpca==1.0
+feedparser==6.0.10
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+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
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+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
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+graphlib_backport==1.1.0
+greenlet==1.1.2
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+h11==0.14.0
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+httpx-sse==0.4.0
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+humanfriendly==10.0
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+icetk==0.0.4
+igraph==0.11.8
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+importlib_resources==6.4.5
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+nvidia-cublas-cu12==12.9.2.10
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+nvidia-cuda-nvrtc-cu12==12.9.86
+nvidia-cuda-runtime-cu12==12.9.79
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+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scipy==1.10.1
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+triton==3.0.0
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/049_test/pip-freeze.txt

@@ -0,0 +1,461 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
+fastapi-sso==0.16.0
+fastavro==1.9.4
+fastuuid==0.13.5
+fbpca==1.0
+feedparser==6.0.10
+ffmpy==0.3.2
+filelock==3.16.1
+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
+frozenlist==1.4.1
+fschat==0.2.35
+fsspec==2025.3.0
+ftfy==6.0.3
+future==0.18.2
+fuzzywuzzy==0.18.0
+gdown==5.2.0
+geosketch==1.3
+geotorch==0.3.0
+get-annotations==0.1.2
+gevent==21.12.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
+gradio_client==0.16.0
+graphlib_backport==1.1.0
+greenlet==1.1.2
+gunicorn==23.0.0
+h11==0.14.0
+h2==4.1.0
+hf-xet==1.2.0
+hf_transfer==0.1.9
+hpack==4.0.0
+httpcore==1.0.5
+httptools==0.6.1
+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface_hub==0.36.1
+humanfriendly==10.0
+hyperframe==6.0.1
+icetk==0.0.4
+igraph==0.11.8
+imageio==2.35.1
+imagesize==1.3.0
+imgaug==0.4.0
+importlib-metadata==7.0.0
+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
+inquirerpy==0.3.4
+iopath==0.1.10
+isodate==0.7.2
+itsdangerous==2.0.1
+jax==0.4.13
+jaxlib==0.4.13
+jaxtyping==0.2.19
+Jinja2==3.1.6
+jiter==0.9.1
+jmespath==0.10.0
+joblib==1.4.2
+jsonnet==0.17.0
+jsonpatch==1.33
+jsonpath-python==1.0.6
+jsonpickle==2.0.0
+jsonschema==4.23.0
+jsonschema-specifications==2023.12.1
+kaggle==1.7.4.5
+Keras-Preprocessing==1.1.2
+kubernetes==29.0.0
+langchain==0.1.16
+langchain-community==0.0.34
+langchain-core==0.1.46
+langchain-experimental==0.0.57
+langchain-text-splitters==0.0.1
+langcodes==3.4.0
+langdetect==1.0.9
+langsmith==0.1.51
+language_data==1.2.0
+layoutparser==0.3.4
+lazy_loader==0.4
+leidenalg==0.10.2
+Levenshtein==0.25.1
+linear-operator==0.4.0
+litellm==1.77.4
+litellm-enterprise==0.1.20
+litellm-proxy-extras==0.2.19
+llama-index==0.9.35
+llvmlite==0.41.1
+lmdb==1.7.3
+lxml==5.2.1
+madoka==0.7.1
+marisa-trie==1.1.0
+Markdown==3.3.6
+markdown-it-py==3.0.0
+markdown2==2.4.13
+markdownify==0.11.6
+MarkupSafe==2.1.5
+marshmallow==3.21.1
+mdtex2html==1.3.0
+mdurl==0.1.2
+metaphor-python==0.1.23
+ml-dtypes==0.2.0
+monotonic==1.6
+mpmath==1.3.0
+mrcfile==1.5.4
+msal==1.36.0
+msal-extensions==1.3.0
+msg-parser==1.2.0
+msgpack==1.0.8
+msgpack-numpy==0.4.3.2
+multidict==6.0.5
+multipledispatch==1.0.0
+multiprocess==0.70.16
+murmurhash==1.0.10
+mypy-extensions==1.0.0
+narwhals==1.42.1
+natsort==8.4.0
+nest-asyncio==1.6.0
+netCDF4==1.7.2
+networkx==3.1
+neuroHarmonize==2.4.5
+nh3==0.2.17
+ninja==1.11.1.1
+nltk==3.8.1
+numba==0.58.1
+numexpr==2.8.6
+numpoly==1.0.6
+numpy==1.24.4
+numpydoc==1.1.0
+nvidia-cublas-cu12==12.9.2.10
+nvidia-cuda-cupti-cu12==12.9.79
+nvidia-cuda-nvrtc-cu12==12.9.86
+nvidia-cuda-runtime-cu12==12.9.79
+nvidia-cudnn-cu12==9.1.0.70
+nvidia-cufft-cu12==11.4.1.4
+nvidia-curand-cu12==10.3.10.19
+nvidia-cusparse-cu12==12.5.10.65
+nvidia-ml-py==12.535.133
+nvidia-nccl-cu12==2.20.5
+nvidia-nvjitlink-cu12==12.9.86
+nvidia-nvtx-cu12==12.9.79
+nvitop==1.3.2
+oauthlib==3.2.2
+onnx==1.16.0
+onnxruntime==1.15.1
+openai==1.101.0
+openpyxl==3.0.9
+opentelemetry-api==1.24.0
+opentelemetry-exporter-otlp-proto-common==1.24.0
+opentelemetry-exporter-otlp-proto-grpc==1.24.0
+opentelemetry-proto==1.24.0
+opentelemetry-sdk==1.24.0
+opentelemetry-semantic-conventions==0.45b0
+opt-einsum==3.3.0
+optax==0.1.5
+ordered-set==4.1.0
+orjson==3.10.1
+overrides==7.7.0
+packaging==26.2
+pandas==2.0.3
+pandas-stubs==1.2.0.45
+parsimonious==0.8.1
+pathlib==1.0.1
+patsy==1.0.1
+pdf2image==1.17.0
+pfzy==0.3.4
+PICOS==2.6.1
+pikepdf==8.4.1
+pip-search==0.0.12
+pkgutil_resolve_name==1.3.10
+plac==0.9.6
+plotly==6.3.0
+pluggy==1.5.0
+ply==3.11
+pondpond==1.4.1
+pooch==1.8.2
+portalocker==2.4.0
+posthog==3.5.0
+preshed==3.0.9
+prettytable==3.11.0
+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+PuLP==3.1.1
+pulsar-client==3.5.0
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scipy==1.10.1
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.4.1
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+triton==3.0.0
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/055_test/env.yml

@@ -0,0 +1,65 @@
+name: 055_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - certifi==2026.2.25
+    - ema-pytorch==0.7.7
+    - filelock==3.16.1
+    - fsspec==2025.3.0
+    - gin-config==0.5.0
+    - idna==3.10
+    - jinja2==3.1.6
+    - markupsafe==2.1.5
+    - mpmath==1.3.0
+    - networkx==3.1
+    - numpy==1.24.4
+    - nvidia-cublas-cu12==12.9.2.10
+    - nvidia-cuda-cupti-cu12==12.9.79
+    - nvidia-cuda-nvrtc-cu12==12.9.86
+    - nvidia-cuda-runtime-cu12==12.9.79
+    - nvidia-cudnn-cu12==8.9.2.26
+    - nvidia-cufft-cu12==11.4.1.4
+    - nvidia-curand-cu12==10.3.10.19
+    - nvidia-cusparse-cu12==12.5.10.65
+    - nvidia-nccl-cu12==2.18.1
+    - nvidia-nvjitlink-cu12==12.9.86
+    - nvidia-nvtx-cu12==12.9.79
+    - packaging==25.0
+    - pyyaml==6.0.3
+    - requests==2.32.4
+    - six==1.17.0
+    - sympy==1.13.3
+    - torch==2.1.2
+    - triton==2.1.0
+    - typing-extensions==4.13.2
+    - urllib3==2.2.3
+prefix: /home/lily/yz979/anaconda3/envs/055_test

configs/055_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/055_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "055_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/055_test",
+  "exported_at": "2026-05-17T04:04:04Z"
+}

configs/055_test/pip-clean.txt

@@ -0,0 +1,465 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+certifi==2026.2.25
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
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+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
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+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
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+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+ema-pytorch==0.7.7
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
+fastapi-sso==0.16.0
+fastavro==1.9.4
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+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
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+fschat==0.2.35
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+get-annotations==0.1.2
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+gin-config==0.5.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
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+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
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+isodate==0.7.2
+itsdangerous==2.0.1
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+jsonpath-python==1.0.6
+jsonpickle==2.0.0
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+kaggle==1.7.4.5
+Keras-Preprocessing==1.1.2
+kubernetes==29.0.0
+langchain==0.1.16
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+lazy_loader==0.4
+leidenalg==0.10.2
+Levenshtein==0.25.1
+linear-operator==0.4.0
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+litellm-proxy-extras==0.2.19
+llama-index==0.9.35
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+lmdb==1.7.3
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+marisa-trie==1.1.0
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+networkx==3.1
+neuroHarmonize==2.4.5
+nh3==0.2.17
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+nvidia-cublas-cu12==12.9.2.10
+nvidia-cuda-cupti-cu12==12.9.79
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+nvidia-cudnn-cu12==8.9.2.26
+nvidia-cufft-cu12==11.4.1.4
+nvidia-curand-cu12==10.3.10.19
+nvidia-cusparse-cu12==12.5.10.65
+nvidia-ml-py==12.535.133
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+nvidia-nvtx-cu12==12.9.79
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+parsimonious==0.8.1
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+pondpond==1.4.1
+pooch==1.8.2
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+session_info==1.0.1
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+zope.event==4.5.0
+zstandard==0.23.0

configs/055_test/pip-freeze.txt

@@ -0,0 +1,465 @@
+absl-py==2.3.1
+accelerate==0.24.1
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.10.11
+aioprometheus==23.12.0
+aiosignal==1.3.1
+alabaster==0.7.12
+allennlp==0.8.4
+altair==5.3.0
+annotated-types==0.6.0
+anyio==3.7.1
+APScheduler==3.11.2
+arxiv==2.1.0
+astunparse==1.6.3
+async-timeout==4.0.3
+attrs==25.3.0
+autograd==1.7.0
+autoray==0.6.12
+awscli==1.32.93
+azure-core==1.33.0
+azure-identity==1.21.0
+azure-storage-blob==12.26.0
+Babel==2.9.1
+backoff==2.2.1
+backports.zoneinfo==0.2.1
+bcrypt==4.1.2
+beartype==0.14.1
+better-abc==0.0.3
+biopython==1.83
+bitarray==2.5.1
+bitsandbytes==0.43.1
+blessed==1.20.0
+blis==0.7.11
+boto3==1.36.0
+botocore==1.36.26
+botorch==0.8.5
+bpl==0.1.1
+Brotli==1.1.0
+bs4==0.0.2
+cachetools==4.2.4
+certifi==2026.2.25
+cffi==1.15.0
+cftime==1.6.4.post1
+chaospy==3.3.9
+charset-normalizer==3.4.7
+chex==0.1.7
+chroma-hnswlib==0.7.3
+chromadb==0.4.15
+click==8.1.7
+cloudpathlib==0.16.0
+cobra==0.29.1
+cohere==5.3.3
+coloredlogs==15.0.1
+confection==0.1.4
+ConfigArgParse==1.5.3
+conllu==0.11
+coverage==7.6.1
+cpm-kernels==1.0.11
+cryptography==42.0.5
+cvxopt==1.3.2
+cymem==2.0.8
+Cython==0.29.30
+dataclasses==0.6
+dataclasses-json==0.6.4
+datasets==2.19.0
+deepdiff==7.0.1
+Deprecated==1.2.14
+deprecation==2.1.0
+dill==0.3.8
+distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docstring_parser==0.17.0
+docutils==0.15.2
+dotenv==0.9.9
+duckduckgo-search==3.9.9
+editdistance==0.6.0
+effdet==0.4.1
+einops==0.7.0
+ema-pytorch==0.7.7
+email-validator==2.3.0
+emoji==2.11.1
+equinox==0.10.4
+et-xmlfile==1.1.0
+eval_type_backport==0.2.2
+exceptiongroup==1.2.1
+fairseq==0.10.2
+faiss-cpu==1.7.4
+faiss-gpu==1.7.2
+fancy-einsum==0.0.3
+fastapi==0.115.14
+fastapi-sso==0.16.0
+fastavro==1.9.4
+fastuuid==0.13.5
+fbpca==1.0
+feedparser==6.0.10
+ffmpy==0.3.2
+filelock==3.16.1
+filetype==1.2.0
+finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
+flaky==3.7.0
+Flask-Cors==3.0.10
+frozenlist==1.4.1
+fschat==0.2.35
+fsspec==2025.3.0
+ftfy==6.0.3
+future==0.18.2
+fuzzywuzzy==0.18.0
+gdown==5.2.0
+geosketch==1.3
+geotorch==0.3.0
+get-annotations==0.1.2
+gevent==21.12.0
+gin-config==0.5.0
+gitdb==4.0.11
+GitPython==3.1.43
+google-pasta==0.2.0
+googleapis-common-protos==1.63.0
+gpustat==1.1.1
+gpytorch==1.10
+gradio_client==0.16.0
+graphlib_backport==1.1.0
+greenlet==1.1.2
+gunicorn==23.0.0
+h11==0.14.0
+h2==4.1.0
+hf-xet==1.2.0
+hf_transfer==0.1.9
+hpack==4.0.0
+httpcore==1.0.5
+httptools==0.6.1
+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface_hub==0.36.1
+humanfriendly==10.0
+hyperframe==6.0.1
+icetk==0.0.4
+idna==3.10
+igraph==0.11.8
+imageio==2.35.1
+imagesize==1.3.0
+imgaug==0.4.0
+importlib-metadata==7.0.0
+importlib_resources==6.4.5
+inequalipy==1.0.5
+iniconfig==1.1.1
+inquirerpy==0.3.4
+iopath==0.1.10
+isodate==0.7.2
+itsdangerous==2.0.1
+jax==0.4.13
+jaxlib==0.4.13
+jaxtyping==0.2.19
+Jinja2==3.1.6
+jiter==0.9.1
+jmespath==0.10.0
+joblib==1.4.2
+jsonnet==0.17.0
+jsonpatch==1.33
+jsonpath-python==1.0.6
+jsonpickle==2.0.0
+jsonschema==4.23.0
+jsonschema-specifications==2023.12.1
+kaggle==1.7.4.5
+Keras-Preprocessing==1.1.2
+kubernetes==29.0.0
+langchain==0.1.16
+langchain-community==0.0.34
+langchain-core==0.1.46
+langchain-experimental==0.0.57
+langchain-text-splitters==0.0.1
+langcodes==3.4.0
+langdetect==1.0.9
+langsmith==0.1.51
+language_data==1.2.0
+layoutparser==0.3.4
+lazy_loader==0.4
+leidenalg==0.10.2
+Levenshtein==0.25.1
+linear-operator==0.4.0
+litellm==1.77.4
+litellm-enterprise==0.1.20
+litellm-proxy-extras==0.2.19
+llama-index==0.9.35
+llvmlite==0.41.1
+lmdb==1.7.3
+lxml==5.2.1
+madoka==0.7.1
+marisa-trie==1.1.0
+Markdown==3.3.6
+markdown-it-py==3.0.0
+markdown2==2.4.13
+markdownify==0.11.6
+MarkupSafe==2.1.5
+marshmallow==3.21.1
+mdtex2html==1.3.0
+mdurl==0.1.2
+metaphor-python==0.1.23
+ml-dtypes==0.2.0
+monotonic==1.6
+mpmath==1.3.0
+mrcfile==1.5.4
+msal==1.36.0
+msal-extensions==1.3.0
+msg-parser==1.2.0
+msgpack==1.0.8
+msgpack-numpy==0.4.3.2
+multidict==6.0.5
+multipledispatch==1.0.0
+multiprocess==0.70.16
+murmurhash==1.0.10
+mypy-extensions==1.0.0
+narwhals==1.42.1
+natsort==8.4.0
+nest-asyncio==1.6.0
+netCDF4==1.7.2
+networkx==3.1
+neuroHarmonize==2.4.5
+nh3==0.2.17
+ninja==1.11.1.1
+nltk==3.8.1
+numba==0.58.1
+numexpr==2.8.6
+numpoly==1.0.6
+numpy==1.24.4
+numpydoc==1.1.0
+nvidia-cublas-cu12==12.9.2.10
+nvidia-cuda-cupti-cu12==12.9.79
+nvidia-cuda-nvrtc-cu12==12.9.86
+nvidia-cuda-runtime-cu12==12.9.79
+nvidia-cudnn-cu12==8.9.2.26
+nvidia-cufft-cu12==11.4.1.4
+nvidia-curand-cu12==10.3.10.19
+nvidia-cusparse-cu12==12.5.10.65
+nvidia-ml-py==12.535.133
+nvidia-nccl-cu12==2.18.1
+nvidia-nvjitlink-cu12==12.9.86
+nvidia-nvtx-cu12==12.9.79
+nvitop==1.3.2
+oauthlib==3.2.2
+onnx==1.16.0
+onnxruntime==1.15.1
+openai==1.101.0
+openpyxl==3.0.9
+opentelemetry-api==1.24.0
+opentelemetry-exporter-otlp-proto-common==1.24.0
+opentelemetry-exporter-otlp-proto-grpc==1.24.0
+opentelemetry-proto==1.24.0
+opentelemetry-sdk==1.24.0
+opentelemetry-semantic-conventions==0.45b0
+opt-einsum==3.3.0
+optax==0.1.5
+ordered-set==4.1.0
+orjson==3.10.1
+overrides==7.7.0
+packaging==26.2
+pandas==2.0.3
+pandas-stubs==1.2.0.45
+parsimonious==0.8.1
+pathlib==1.0.1
+patsy==1.0.1
+pdf2image==1.17.0
+pfzy==0.3.4
+PICOS==2.6.1
+pikepdf==8.4.1
+pip-search==0.0.12
+pkgutil_resolve_name==1.3.10
+plac==0.9.6
+plotly==6.3.0
+pluggy==1.5.0
+ply==3.11
+pondpond==1.4.1
+pooch==1.8.2
+portalocker==2.4.0
+posthog==3.5.0
+preshed==3.0.9
+prettytable==3.11.0
+primer3-py==2.2.0
+prompt-toolkit==3.0.43
+propcache==0.2.0
+PuLP==3.1.1
+pulsar-client==3.5.0
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pyclipper==1.3.0.post5
+pycocotools==2.0.7
+pycparser==2.21
+pydantic==2.10.6
+pydantic_core==2.27.2
+pydeck==0.9.0b1
+pyDOE2==1.3.0
+pydub==0.25.1
+pyfaidx==0.9.0.1
+Pygments==2.19.2
+PyJWT==2.8.0
+pymodbus==3.6.9
+PyMuPDF==1.23.16
+PyMuPDFb==1.23.9
+PyNaCl==1.6.2
+pynndescent==0.5.13
+Pyomo==6.8.2
+pyOpenSSL==24.1.0
+pypandoc==1.13
+pypdf==4.2.0
+pypdfium2==4.29.0
+PyPika==0.48.9
+PyQt5==5.15.7
+PyQt5-Qt5==5.15.17
+PyQt5_sip==12.15.0
+pyro-api==0.1.2
+pyro-ppl==1.9.1
+pysam==0.23.3
+PySocks==1.7.1
+pysqlite3-binary==0.5.2.post3
+pystan==2.19.1.1
+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
+python-docx==1.1.0
+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
+python-pptx==0.6.23
+python-slugify==8.0.4
+pytorch-pretrained-bert==0.6.2
+pytz==2025.2
+pyvista==0.44.2
+PyWavelets==1.4.1
+PyYAML==6.0.3
+quantile-python==1.1
+rapidfuzz==3.8.1
+rapidocr-onnxruntime==1.3.8
+ray==2.10.0
+rdkit==2024.3.5
+redis==6.1.1
+referencing==0.35.1
+regex==2022.4.24
+requests==2.32.4
+requests-oauthlib==1.3.0
+responses==0.16.0
+rich==13.7.1
+rouge-score==0.1.2
+rpds-py==0.20.1
+rq==2.3.3
+rsa==4.7.2
+ruff==0.4.2
+rustworkx==0.15.1
+s3transfer==0.11.3
+sacrebleu==2.1.0
+sacremoses==0.0.46
+safetensors==0.4.3
+scooby==0.10.1
+seaborn==0.13.2
+semantic-version==2.10.0
+sentence-transformers==2.2.2
+sentencepiece==0.1.91
+sentry-sdk==2.39.0
+session_info==1.0.1
+sgmllib3k==1.0.0
+shapely==2.0.4
+shellingham==1.5.4
+shortuuid==1.0.13
+six==1.17.0
+smart-open==6.4.0
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sobol-seq==0.2.0
+socksio==1.0.0
+soupsieve==2.5
+spacy-legacy==3.0.12
+spacy-loggers==1.0.5
+Sphinx==4.3.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+SQLAlchemy==2.0.19
+sqlparse==0.4.2
+sse-starlette==1.8.2
+starlette==0.44.0
+statsmodels==0.14.1
+stdlib-list==0.10.0
+streamlit==1.30.0
+streamlit-aggrid==0.3.4.post3
+streamlit-antd-components==0.3.1
+streamlit-chatbox==1.1.11
+streamlit-feedback==0.1.3
+streamlit-modal==0.1.0
+streamlit-option-menu==0.3.12
+strsimpy==0.2.1
+svgwrite==1.4.3
+sympy==1.13.3
+tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
+tabulate==0.8.9
+tenacity==8.2.3
+tensorboard-plugin-wit==1.8.0
+tensorboardX==2.4.1
+text-unidecode==1.3
+texttable==1.7.0
+thefuzz==0.22.1
+threadpoolctl==3.5.0
+tifffile==2023.7.10
+tiktoken==0.7.0
+timm==0.9.16
+tk==0.1.0
+tokenizers==0.20.3
+toml==0.10.2
+tomlkit==0.12.0
+toolz==0.12.1
+torch==2.1.2
+torch-geometric==2.6.1
+torchaudio==2.1.2+cu118
+torchtext==0.4.0
+tornado==6.4
+tqdm==4.67.1
+transformer-lens==2.16.1
+transformers==4.46.3
+transformers-stream-generator==0.0.5
+triton==2.1.0
+typed-argument-parser==1.10.1
+typeguard==4.4.0
+typer==0.9.4
+types-requests==2.31.0.20240406
+typing-inspect==0.9.0
+typing-utils==0.1.0
+typing_extensions==4.13.2
+tzdata==2024.1
+tzlocal==5.2
+umap-learn==0.5.7
+Unidecode==1.3.2
+unittest-xml-reporting==3.2.0
+unstructured==0.11.0
+unstructured-client==0.22.0
+unstructured-inference==0.7.15
+unstructured.pytesseract==0.3.12
+urllib3==2.2.3
+uvicorn==0.29.0
+uvloop==0.21.0
+validators==0.28.1
+vllm==0.2.7
+vtk==9.3.1
+wandb==0.22.0
+watchdog==3.0.0
+watchfiles==0.21.0
+wavedrom==2.0.3.post3
+weasel==0.3.4
+websocket-client==1.8.0
+websockets==13.1
+Werkzeug==2.0.2
+word2number==1.1
+xlrd==2.0.1
+XlsxWriter==3.0.2
+xxhash==2.0.2
+Yapsy==1.12.2
+yarl==1.15.2
+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/061_test/env.yml

@@ -0,0 +1,51 @@
+name: 061_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.41.2
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.3
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - certifi==2026.2.25
+    - charset-normalizer==3.4.7
+    - filelock==3.16.1
+    - fsspec==2024.6.1
+    - idna==3.10
+    - jinja2==3.1.6
+    - markupsafe==2.1.5
+    - mpmath==1.3.0
+    - numpy==1.24.4
+    - packaging==25.0
+    - pyyaml==6.0.3
+    - requests==2.32.4
+    - scipy==1.10.1
+    - six==1.17.0
+    - sympy==1.13.3
+    - torch==2.1.2+cpu
+    - urllib3==2.2.3
+prefix: /home/lily/yz979/anaconda3/envs/061_test

configs/061_test/explicit.txt

@@ -0,0 +1,31 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-devel-5.8.1-hb9d3cd8_2.conda#f61edadbb301530bd65a32646bd81552
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda#a0116df4f4ed05c303811a837d5b39d8
+https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
+https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
+https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
+https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
+https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96

configs/061_test/meta.json

@@ -0,0 +1,8 @@
+{
+  "env": "061_test",
+  "python_version": "3.8.20",
+  "has_cuda_hint": false,
+  "editable_count": 0,
+  "source_prefix": "/home/lily/yz979/anaconda3/envs/061_test",
+  "exported_at": "2026-05-17T04:04:08Z"
+}

configs/061_test/pip-clean.txt

@@ -0,0 +1,451 @@
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+zope.event==4.5.0
+zstandard==0.23.0

configs/061_test/pip-freeze.txt

@@ -0,0 +1,451 @@
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+APScheduler==3.11.2
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+async-timeout==4.0.3
+attrs==25.3.0
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+pikepdf==8.4.1
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+pytesseract==0.3.10
+pytest-cov==5.0.0
+python-dateutil==2.9.0.post0
+python-decouple==3.8
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+python-dotenv==1.0.1
+python-iso639==2024.4.27
+python-Levenshtein==0.25.1
+python-multipart==0.0.18
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+word2number==1.1
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+Yapsy==1.12.2
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+youtube-search==2.1.2
+zipp==3.20.2
+zope.event==4.5.0
+zstandard==0.23.0

configs/s41467_024_45642_z_test/env.yml

@@ -0,0 +1,89 @@
+name: s41467_024_45642_z_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - certifi=2024.2.2
+  - cycler=0.12.1
+  - freetype=2.14.1
+  - joblib=1.4.2
+  - kiwisolver=1.4.4
+  - lcms2=2.17
+  - ld_impl_linux-64=2.44
+  - lerc=4.0.0
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libdeflate=1.24
+  - libffi=3.4.6
+  - libfreetype=2.14.1
+  - libfreetype6=2.14.1
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgfortran=15.1.0
+  - libgfortran-ng=15.1.0
+  - libgfortran5=15.1.0
+  - libgomp=15.1.0
+  - libjpeg-turbo=3.1.0
+  - liblapack=3.9.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libopenblas=0.3.25
+  - libpng=1.6.50
+  - libsqlite=3.50.4
+  - libstdcxx=15.1.0
+  - libstdcxx-ng=15.1.0
+  - libtiff=4.7.1
+  - libuuid=2.38.1
+  - libwebp-base=1.6.0
+  - libxcb=1.17.0
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - matplotlib-base=3.4.3
+  - ncurses=6.5
+  - networkx=2.8.8
+  - numpy=1.24.4
+  - openjpeg=2.5.4
+  - openssl=3.5.4
+  - packaging=25.0
+  - pandas=2.0.3
+  - patsy=0.5.6
+  - pillow=10.4.0
+  - pip=22.1.2
+  - pthread-stubs=0.4
+  - pyparsing=3.1.4
+  - python=3.8.20
+  - python-tzdata=2025.2
+  - python_abi=3.8
+  - pytz=2024.2
+  - readline=8.2
+  - scikit-learn=1.3.2
+  - seaborn=0.13.2
+  - seaborn-base=0.13.2
+  - setuptools=70.3.0
+  - statsmodels=0.13.5
+  - threadpoolctl=3.3.0
+  - tk=8.6.13
+  - tornado=6.2
+  - wheel=0.45.1
+  - xorg-libxau=1.0.12
+  - xorg-libxdmcp=1.1.5
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - zstd=1.5.7
+  - pip:
+    - contourpy==1.1.1
+    - coverage==7.6.1
+    - matplotlib==3.7.5
+    - pyctem==0.0.1
+    - pytest-cov==5.0.0
+    - python-dateutil==2.9.0.post0
+    - scipy==1.10.1
+    - six==1.17.0
+    - unittest-xml-reporting==3.2.0
+prefix: /home/lily/yz979/anaconda3/envs/s41467_024_45642_z_test

configs/s41467_024_46773_z_test/env.yml

@@ -0,0 +1,48 @@
+name: s41467_024_46773_z_test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - ca-certificates=2025.8.3
+  - ld_impl_linux-64=2.44
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - liblzma-devel=5.8.1
+  - libnsl=2.0.1
+  - libsqlite=3.50.4
+  - libuuid=2.38.1
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openssl=3.5.2
+  - pip=22.1.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=70.3.0
+  - tk=8.6.13
+  - wheel=0.45.1
+  - xz=5.8.1
+  - xz-gpl-tools=5.8.1
+  - xz-tools=5.8.1
+  - pip:
+    - anndata==0.9.2
+    - coverage==7.6.1
+    - h5py==3.11.0
+    - natsort==8.4.0
+    - numpy==1.24.4
+    - packaging==25.0
+    - pandas==2.0.3
+    - pytest-cov==5.0.0
+    - scikit-learn==1.3.2
+    - scipy==1.10.1
+    - six==1.17.0
+    - sketchkh==0.1.3
+    - tqdm-joblib==0.0.4
+    - unittest-xml-reporting==3.2.0
+prefix: /home/lily/yz979/anaconda3/envs/s41467_024_46773_z_test