File size: 2,060 Bytes
ad7521e
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
source_file	row_count	delimiter	columns	mutation_fields	ptm_site_fields	effect_fields	reference_fields	read_error
clinvar/variant_summary.txt.gz	8992046	tab	#AlleleID|Type|Name|GeneID|GeneSymbol|HGNC_ID|ClinicalSignificance|ClinSigSimple|LastEvaluated|RS# (dbSNP)|nsv/esv (dbVar)|RCVaccession|PhenotypeIDS|PhenotypeList|Origin|OriginSimple|Assembly|ChromosomeAccession|Chromosome|Start|Stop|ReferenceAllele|AlternateAllele|Cytogenetic|ReviewStatus|NumberSubmitters|Guidelines|TestedInGTR|OtherIDs|SubmitterCategories|VariationID|PositionVCF|ReferenceAlleleVCF|AlternateAlleleVCF|SomaticClinicalImpact|SomaticClinicalImpactLastEvaluated|ReviewStatusClinicalImpact|Oncogenicity|OncogenicityLastEvaluated|ReviewStatusOncogenicity|SCVsForAggregateGermlineClassification|SCVsForAggregateSomaticClinicalImpact|SCVsForAggregateOncogenicityClassification	RS# (dbSNP)|VariationID	PositionVCF		ReferenceAllele|ReferenceAlleleVCF	
ptmd/unzipped/PTMD2_Acetylation.csv	16157	comma	UniProt|Position|Type|State|Disease|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|PDAs_id|Class	MutationSite	Position|Residue	State	Source|PMID|PDAs_id	
ptmd/unzipped/PTMD2_Phosphorylation.csv	196146	comma	UniProt|Position|Type|State|Disease|PDAs_id|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|Class	MutationSite	Position|Residue	State	PDAs_id|Source|PMID	
ptmd/unzipped/PTMD2_Ubiquitination.csv	93392	comma	UniProt|Position|Type|State|Disease|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|PDAs_id|Class	MutationSite	Position|Residue	State	Source|PMID|PDAs_id	
reactome/ReactomePathways.txt	23602	tab	R-BTA-73843|5-Phosphoribose 1-diphosphate biosynthesis|Bos taurus					
reactome/ReactomePathwaysRelation.txt	23716	tab	R-BTA-109581|R-BTA-109606					
reactome/UniProt2Reactome_All_Levels.txt	942791	tab	A0A023GPK8|R-DME-1500931|https://reactome.org/PathwayBrowser/#/R-DME-1500931|Cell-Cell communication|IEA|Drosophila melanogaster