Add files using upload-large-folder tool
Browse files- README.md +24 -12
- initial_data/UPLOAD_SCOPE.md +21 -0
- initial_data/brca_tcga_pan_can_atlas_2018/LICENSE +1 -0
- initial_data/brca_tcga_pan_can_atlas_2018/README.md +35 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_armlevel_cna.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_patient.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_sample.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_supp_hypoxia.txt +1085 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_cna_hg19.seg +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_gene_panel_matrix.txt +1085 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_genetic_ancestry.txt +6 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_protein_quantification.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_protein_quantification_zscores.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_resource_definition.txt +2 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_resource_patient.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_rppa.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_rppa_zscores.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_sv.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_sample_acquisition.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_status.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_treatment.txt +0 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_armlevel_cna.txt +10 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_clinical_patient.txt +4 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_clinical_sample.txt +4 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_cna.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_cna_hg19_seg.txt +9 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_gene_panel_matrix.txt +4 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_genetic_ancestry.txt +11 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_log2_cna.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_methylation_hm27_hm450_merged.txt +11 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_methylation_hm450.txt +11 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_mutations.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_phosphoprotein_quantification.txt +12 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_protein_quantification.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_protein_quantification_zscores.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_resource_definition.txt +3 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_resource_patient.txt +3 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_rppa.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_rppa_zscores.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_study.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_sv.txt +8 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_sample_acquisition.txt +4 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_status.txt +4 -0
- initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_treatment.txt +4 -0
- initial_data/root/Reactome_UniProt2Reactome_Homo_sapiens_2026-03-23.txt +0 -0
- initial_data/root/idmapping_model_organism_9606_2026_05_24.gff +0 -0
README.md
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- mutation
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- ptm
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- biomedical
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private: true
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---
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# GraphResidual data package
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## Layout
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- `data_raw/`: source data and model assets
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Reactome, PTMD, PPI/complex resources, and AMPLIFY-120M files.
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- `data_benchmark/`: benchmark splits, candidate sets, and audit tables.
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- `data_processed/`: processed node, edge, and label tables.
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- `data_processed_clean/`: cleaned processed tables.
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- `data_processed_core/`: core processed tables and candidate tables.
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- `work/graph_core/`: compact graph mappings, relations, and graph
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- `work/graph_full/`: full graph node and relation tables.
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## Exclusions
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Images, figures, logs,
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## Reproducibility
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Use the public code and usage guide in
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[GraphResidual](https://github.com/zhang-chris0320/GraphResidual) for the
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expected directory layout and model interfaces.
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database terms and citation requirements
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- mutation
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- ptm
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- biomedical
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---
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# GraphResidual data package
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Public research dataset package for the GraphResidual repository. It contains
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source datasets, derived benchmark tables, processed graph tables, and graph
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artifacts used by the ESM-2 and AMPLIFY-120M experiments.
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## Layout
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- `data_raw/`: source data and model assets used by the released experiments.
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- `data_benchmark/`: benchmark splits, candidate sets, and audit tables.
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- `data_processed/`: processed node, edge, and label tables.
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- `data_processed_clean/`: cleaned processed tables.
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- `data_processed_core/`: core processed tables and candidate tables.
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- `work/graph_core/`: compact graph mappings, relations, and graph artifacts.
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- `work/graph_full/`: full graph node and relation tables.
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- `initial_data/root/`: additional server-side source resources, including
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ClinVar, Reactome, UniProt, PTM, GTEx, and final ClinVar tables.
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- `initial_data/brca_tcga_pan_can_atlas_2018/`: BRCA TCGA PanCanAtlas 2018
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molecular and clinical source tables.
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- `initial_data/clinvar_strict_rebuild_v1/`: strict ClinVar graph nodes,
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edges, mappings, splits, graph inputs, and removal ledgers.
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- `initial_data/clinvar_strict_rebuild_audit/`: source manifests and audit
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tables for the strict ClinVar rebuild.
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- `initial_data/inductive_graph_residual_extension/`: inductive split data,
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graph mappings, feature inventories, and related data contracts.
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- `initial_data/data_raw_download/`, `data_raw_partial/`, and
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`data_raw_scp/`: retained raw-download copies and transfer artifacts.
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## Exclusions
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Images, figures, logs, Python bytecode, cache directories, code snapshots,
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model checkpoints, embeddings, predictions, and experiment-only output tables
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are not included in this data package.
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## Reproducibility and provenance
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Use the public code and usage guide in
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[GraphResidual](https://github.com/zhang-chris0320/GraphResidual) for the
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expected directory layout and model interfaces. The uploaded data are public;
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check the original source database terms, licenses, and citation requirements
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before redistribution or publication.
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initial_data/UPLOAD_SCOPE.md
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# Server initial-data upload scope
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Source: `/root/autodl-tmp/bio/` on `connect.cqa1.seetacloud.com`.
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This package contains the server-side initial/source resources that were not
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already present in the GraphResidual dataset repository:
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- top-level ClinVar, Reactome, UniProt, PTM, GTEx, MC3, and final ClinVar tables;
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- `brca_tcga_pan_can_atlas_2018/` source molecular and clinical tables;
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- `clinvar_strict_rebuild_v1/` graph inputs, nodes, edges, mappings, splits,
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provenance tables, and removal ledgers;
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- `clinvar_strict_rebuild_audit/` source manifests and audit tables;
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- `inductive_graph_residual_extension/` inductive graph datasets, splits,
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feature inventories, and contracts;
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- retained raw-download copies under `data_raw_download/`,
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`data_raw_partial/`, and `data_raw_scp/`.
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Excluded from this upload: images and figures, logs, caches, Python bytecode,
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code snapshots, model checkpoints, embeddings, predictions, and experiment-
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only output directories. Empty disease-specific directories were not created
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in the repository because they contain no files.
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initial_data/brca_tcga_pan_can_atlas_2018/LICENSE
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TCGA data are available under Broad Institute GDAC TCGA Analysis Pipeline License. The Cancer Genome Atlas Consortium is pleased to provide the research community with preliminary data prior to publication. Users are requested to carefully consider that these data are preliminary and have yet to be validated. Researchers are warned that the preliminary data have a significant uncertainty, are likely to change, and should be used with caution.
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initial_data/brca_tcga_pan_can_atlas_2018/README.md
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## Improving PanCancer Atlas Data: (transformation steps for the new data types being added)
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### The Timeline/Treatment data:
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**Data Source**
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- GDAC Firehose: https://gdac.broadinstitute.org/
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- File Used: `Merge_Clinical.Level_1.20160128` (clin.merged.txt) for each cancer type.
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**Data Transformation**
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- The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
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### The Genetic Ancestry data:
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**Data Source**
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- GDAC Firehose: https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020
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- File Used: `Admixture_by_sample.txt` (Admix percent by sample) for each cancer type.
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### The Methylation data:
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**Data Source**
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- GDAC Firehose: https://gdc.cancer.gov/node/977
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- File Used: `jhu-usc.edu_PANCAN_HumanMethylation450.betaValue_whitelisted.tsv` (DNA methylation 450K only beta value data matrix) for each cancer type.
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**Data Transformation**
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- The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
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- The meta info for the Infinium Illumina 450k probes used for this profile is under the folder "probe_meta" "probe_450k_mapinfo_PQ.txt" is the original download from Illumina.
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### Tumor Break Load (TBL):
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**Data Source**
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- TBL scores based on Lakbir et al., 2024 (Manuscript in progress)
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- Overview of TBL calculation for TCGA, from [Lakbir et al., Eur J Cancer 2024](https://pubmed.ncbi.nlm.nih.gov/36334560/)
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- Data is provided as a sample-level clinical attribute labeled `Tumor Break Load`
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initial_data/brca_tcga_pan_can_atlas_2018/data_armlevel_cna.txt
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The diff for this file is too large to render.
See raw diff
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initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_patient.txt
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The diff for this file is too large to render.
See raw diff
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initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_sample.txt
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The diff for this file is too large to render.
See raw diff
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initial_data/brca_tcga_pan_can_atlas_2018/data_clinical_supp_hypoxia.txt
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| 1 |
+
#Patient Identifier Buffa Hypoxia Score Winter Hypoxia Score Ragnum Hypoxia Score
|
| 2 |
+
#Identifier to uniquely specify a patient. mRNA based Buffa Hypoxia Score mRNA based Winter Hypoxia Score mRNA based Ragnum Hypoxia Score
|
| 3 |
+
#STRING NUMBER NUMBER NUMBER
|
| 4 |
+
#PATIENT PATIENT PATIENT PATIENT
|
| 5 |
+
#1 1 1 1
|
| 6 |
+
PATIENT_ID BUFFA_HYPOXIA_SCORE WINTER_HYPOXIA_SCORE RAGNUM_HYPOXIA_SCORE
|
| 7 |
+
TCGA-3C-AAAU -21 -28 0
|
| 8 |
+
TCGA-3C-AALI 5 20 18
|
| 9 |
+
TCGA-3C-AALJ -5 -10 12
|
| 10 |
+
TCGA-3C-AALK -27 4 2
|
| 11 |
+
TCGA-4H-AAAK -27 -20 -4
|
| 12 |
+
TCGA-5L-AAT0 -25 -28 -16
|
| 13 |
+
TCGA-5T-A9QA -13 -14 4
|
| 14 |
+
TCGA-A1-A0SB -35 -40 -16
|
| 15 |
+
TCGA-A1-A0SD -35 -20 -6
|
| 16 |
+
TCGA-A1-A0SE -29 -22 -4
|
| 17 |
+
TCGA-A1-A0SF -21 -32 -6
|
| 18 |
+
TCGA-A1-A0SG -17 -20 -2
|
| 19 |
+
TCGA-A1-A0SH -29 -34 -12
|
| 20 |
+
TCGA-A1-A0SI -9 -14 10
|
| 21 |
+
TCGA-A1-A0SJ -9 -12 6
|
| 22 |
+
TCGA-A1-A0SK 27 22 14
|
| 23 |
+
TCGA-A1-A0SM -7 -8 8
|
| 24 |
+
TCGA-A1-A0SN -11 -8 8
|
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+
TCGA-EW-A1IW -11 -8 20
|
| 940 |
+
TCGA-EW-A1IX -43 -30 -18
|
| 941 |
+
TCGA-EW-A1IY -15 -18 2
|
| 942 |
+
TCGA-EW-A1IZ -13 -34 6
|
| 943 |
+
TCGA-EW-A1J1 -23 -16 -14
|
| 944 |
+
TCGA-EW-A1J2 -43 -32 -16
|
| 945 |
+
TCGA-EW-A1J3 -11 -6 8
|
| 946 |
+
TCGA-EW-A1J5 -33 -32 10
|
| 947 |
+
TCGA-EW-A1J6 -7 -8 2
|
| 948 |
+
TCGA-EW-A1OV -9 -24 18
|
| 949 |
+
TCGA-EW-A1OW 21 20 14
|
| 950 |
+
TCGA-EW-A1OX -33 -48 -10
|
| 951 |
+
TCGA-EW-A1OY 15 10 10
|
| 952 |
+
TCGA-EW-A1OZ 7 24 22
|
| 953 |
+
TCGA-EW-A1P0 -27 -36 2
|
| 954 |
+
TCGA-EW-A1P1 -15 -8 -10
|
| 955 |
+
TCGA-EW-A1P3 -9 -6 8
|
| 956 |
+
TCGA-EW-A1P4 39 30 20
|
| 957 |
+
TCGA-EW-A1P5 -25 -24 -10
|
| 958 |
+
TCGA-EW-A1P6 -21 -10 4
|
| 959 |
+
TCGA-EW-A1P7 -33 -30 -16
|
| 960 |
+
TCGA-EW-A1P8 23 -2 12
|
| 961 |
+
TCGA-EW-A1PA -5 -8 10
|
| 962 |
+
TCGA-EW-A1PB 21 2 4
|
| 963 |
+
TCGA-EW-A1PC 1 8 16
|
| 964 |
+
TCGA-EW-A1PD -17 -14 10
|
| 965 |
+
TCGA-EW-A1PE -35 -40 -6
|
| 966 |
+
TCGA-EW-A1PF -37 -24 -6
|
| 967 |
+
TCGA-EW-A1PG -11 14 -10
|
| 968 |
+
TCGA-EW-A1PH 25 18 14
|
| 969 |
+
TCGA-EW-A2FR 5 16 14
|
| 970 |
+
TCGA-EW-A2FS -11 -10 2
|
| 971 |
+
TCGA-EW-A2FV 1 -4 16
|
| 972 |
+
TCGA-EW-A2FW -9 0 8
|
| 973 |
+
TCGA-EW-A3E8 -29 -32 -4
|
| 974 |
+
TCGA-EW-A3U0 -17 -26 6
|
| 975 |
+
TCGA-EW-A423 -27 -26 -6
|
| 976 |
+
TCGA-EW-A424 -25 -40 0
|
| 977 |
+
TCGA-EW-A6S9 -7 22 12
|
| 978 |
+
TCGA-EW-A6SA -3 -14 8
|
| 979 |
+
TCGA-EW-A6SB 11 -18 12
|
| 980 |
+
TCGA-EW-A6SC -23 -22 6
|
| 981 |
+
TCGA-EW-A6SD 9 -4 18
|
| 982 |
+
TCGA-GI-A2C8 -29 -20 -18
|
| 983 |
+
TCGA-GI-A2C9 3 -2 -4
|
| 984 |
+
TCGA-GM-A2D9 -23 -22 -18
|
| 985 |
+
TCGA-GM-A2DA -25 -18 -6
|
| 986 |
+
TCGA-GM-A2DB 31 50 18
|
| 987 |
+
TCGA-GM-A2DC -19 -38 -20
|
| 988 |
+
TCGA-GM-A2DD 27 12 10
|
| 989 |
+
TCGA-GM-A2DF 21 6 16
|
| 990 |
+
TCGA-GM-A2DH -1 -22 10
|
| 991 |
+
TCGA-GM-A2DI -33 -46 -14
|
| 992 |
+
TCGA-GM-A2DK -17 -2 -2
|
| 993 |
+
TCGA-GM-A2DL 9 6 20
|
| 994 |
+
TCGA-GM-A2DM -23 -28 -14
|
| 995 |
+
TCGA-GM-A2DN -35 -30 6
|
| 996 |
+
TCGA-GM-A2DO -23 -40 4
|
| 997 |
+
TCGA-GM-A3NW -35 -30 -14
|
| 998 |
+
TCGA-GM-A3NY -29 -8 -6
|
| 999 |
+
TCGA-GM-A3XG -17 -22 -16
|
| 1000 |
+
TCGA-GM-A3XL 31 26 20
|
| 1001 |
+
TCGA-GM-A3XN -29 -18 -16
|
| 1002 |
+
TCGA-GM-A4E0 -33 -52 -14
|
| 1003 |
+
TCGA-GM-A5PV -19 -22 -16
|
| 1004 |
+
TCGA-GM-A5PX -27 -32 -22
|
| 1005 |
+
TCGA-HN-A2NL -5 -12 12
|
| 1006 |
+
TCGA-HN-A2OB -39 -36 -18
|
| 1007 |
+
TCGA-JL-A3YW 43 44 10
|
| 1008 |
+
TCGA-JL-A3YX 17 16 16
|
| 1009 |
+
TCGA-LD-A66U -15 -4 -14
|
| 1010 |
+
TCGA-LD-A74U -21 -18 -6
|
| 1011 |
+
TCGA-LD-A7W5 -31 -20 -18
|
| 1012 |
+
TCGA-LD-A7W6 -39 -50 -6
|
| 1013 |
+
TCGA-LD-A9QF -11 -16 -2
|
| 1014 |
+
TCGA-LL-A440 -35 -34 -12
|
| 1015 |
+
TCGA-LL-A441 -25 -42 4
|
| 1016 |
+
TCGA-LL-A442 -37 -36 -12
|
| 1017 |
+
TCGA-LL-A50Y -21 -12 -18
|
| 1018 |
+
TCGA-LL-A5YL -5 6 2
|
| 1019 |
+
TCGA-LL-A5YM 1 -8 -4
|
| 1020 |
+
TCGA-LL-A5YN -5 -12 -8
|
| 1021 |
+
TCGA-LL-A5YO 11 -12 12
|
| 1022 |
+
TCGA-LL-A5YP 9 4 12
|
| 1023 |
+
TCGA-LL-A6FP -17 -6 -16
|
| 1024 |
+
TCGA-LL-A6FQ 1 2 -4
|
| 1025 |
+
TCGA-LL-A6FR 37 36 8
|
| 1026 |
+
TCGA-LL-A73Y -19 -26 -6
|
| 1027 |
+
TCGA-LL-A73Z 5 -4 -10
|
| 1028 |
+
TCGA-LL-A740 -1 6 0
|
| 1029 |
+
TCGA-LL-A7SZ 25 2 18
|
| 1030 |
+
TCGA-LL-A7T0 5 6 12
|
| 1031 |
+
TCGA-LL-A8F5 43 36 18
|
| 1032 |
+
TCGA-LL-A9Q3 -13 -8 -18
|
| 1033 |
+
TCGA-LQ-A4E4 -23 -10 4
|
| 1034 |
+
TCGA-MS-A51U -41 -44 -20
|
| 1035 |
+
TCGA-OK-A5Q2 -21 -16 12
|
| 1036 |
+
TCGA-OL-A5D6 -5 -4 -10
|
| 1037 |
+
TCGA-OL-A5D7 21 -14 14
|
| 1038 |
+
TCGA-OL-A5D8 -27 -32 -4
|
| 1039 |
+
TCGA-OL-A5DA -29 -26 -14
|
| 1040 |
+
TCGA-OL-A5RU -31 -46 -16
|
| 1041 |
+
TCGA-OL-A5RV -39 -32 -14
|
| 1042 |
+
TCGA-OL-A5RW 35 32 4
|
| 1043 |
+
TCGA-OL-A5RX -37 -30 -16
|
| 1044 |
+
TCGA-OL-A5RY 11 6 18
|
| 1045 |
+
TCGA-OL-A5RZ 3 2 14
|
| 1046 |
+
TCGA-OL-A5S0 43 28 24
|
| 1047 |
+
TCGA-OL-A66H -13 -28 -20
|
| 1048 |
+
TCGA-OL-A66I 15 -10 8
|
| 1049 |
+
TCGA-OL-A66J -25 -6 -14
|
| 1050 |
+
TCGA-OL-A66K -25 -26 -16
|
| 1051 |
+
TCGA-OL-A66L -13 0 -12
|
| 1052 |
+
TCGA-OL-A66N -17 -16 -12
|
| 1053 |
+
TCGA-OL-A66O 5 -4 14
|
| 1054 |
+
TCGA-OL-A66P 15 -6 2
|
| 1055 |
+
TCGA-OL-A6VO 23 12 14
|
| 1056 |
+
TCGA-OL-A6VQ -35 -34 -22
|
| 1057 |
+
TCGA-OL-A6VR -15 -18 -12
|
| 1058 |
+
TCGA-OL-A97C 9 20 4
|
| 1059 |
+
TCGA-PE-A5DC -5 -4 8
|
| 1060 |
+
TCGA-PE-A5DD -23 -10 0
|
| 1061 |
+
TCGA-PE-A5DE -25 -34 -2
|
| 1062 |
+
TCGA-PL-A8LV 13 10 14
|
| 1063 |
+
TCGA-PL-A8LX -27 -22 -20
|
| 1064 |
+
TCGA-PL-A8LY -25 -14 -14
|
| 1065 |
+
TCGA-PL-A8LZ -3 -28 4
|
| 1066 |
+
TCGA-S3-A6ZF -13 -16 12
|
| 1067 |
+
TCGA-S3-A6ZG -29 -24 6
|
| 1068 |
+
TCGA-S3-A6ZH -13 0 12
|
| 1069 |
+
TCGA-S3-AA0Z -15 -22 4
|
| 1070 |
+
TCGA-S3-AA10 15 10 12
|
| 1071 |
+
TCGA-S3-AA11 -29 -28 -6
|
| 1072 |
+
TCGA-S3-AA12 -13 -20 0
|
| 1073 |
+
TCGA-S3-AA14 -29 -22 2
|
| 1074 |
+
TCGA-S3-AA15 -9 -10 8
|
| 1075 |
+
TCGA-S3-AA17 -13 -38 12
|
| 1076 |
+
TCGA-UL-AAZ6 21 14 18
|
| 1077 |
+
TCGA-UU-A93S 15 14 10
|
| 1078 |
+
TCGA-V7-A7HQ 7 10 -6
|
| 1079 |
+
TCGA-W8-A86G -31 -24 -22
|
| 1080 |
+
TCGA-WT-AB41 -19 -24 -12
|
| 1081 |
+
TCGA-WT-AB44 -21 -8 -12
|
| 1082 |
+
TCGA-XX-A899 -37 -38 -8
|
| 1083 |
+
TCGA-XX-A89A -31 -28 -10
|
| 1084 |
+
TCGA-Z7-A8R5 -13 -12 -16
|
| 1085 |
+
TCGA-Z7-A8R6 21 34 26
|
initial_data/brca_tcga_pan_can_atlas_2018/data_cna_hg19.seg
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_gene_panel_matrix.txt
ADDED
|
@@ -0,0 +1,1085 @@
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|
| 1 |
+
SAMPLE_ID mutations gistic structural_variants
|
| 2 |
+
TCGA-3C-AAAU-01 WXS WXS WXS
|
| 3 |
+
TCGA-3C-AALI-01 WXS WXS WXS
|
| 4 |
+
TCGA-3C-AALJ-01 WXS WXS WXS
|
| 5 |
+
TCGA-3C-AALK-01 WXS WXS WXS
|
| 6 |
+
TCGA-4H-AAAK-01 WXS WXS WXS
|
| 7 |
+
TCGA-5L-AAT0-01 WXS WXS WXS
|
| 8 |
+
TCGA-5T-A9QA-01 WXS WXS WXS
|
| 9 |
+
TCGA-A1-A0SB-01 WXS WXS WXS
|
| 10 |
+
TCGA-A1-A0SD-01 WXS WXS WXS
|
| 11 |
+
TCGA-A1-A0SE-01 WXS WXS WXS
|
| 12 |
+
TCGA-A1-A0SF-01 WXS WXS WXS
|
| 13 |
+
TCGA-A1-A0SG-01 WXS WXS WXS
|
| 14 |
+
TCGA-A1-A0SH-01 WXS WXS WXS
|
| 15 |
+
TCGA-A1-A0SI-01 WXS WXS WXS
|
| 16 |
+
TCGA-A1-A0SJ-01 WXS WXS WXS
|
| 17 |
+
TCGA-A1-A0SK-01 WXS WXS WXS
|
| 18 |
+
TCGA-A1-A0SM-01 WXS WXS WXS
|
| 19 |
+
TCGA-A1-A0SN-01 WXS WXS WXS
|
| 20 |
+
TCGA-A1-A0SO-01 WXS WXS WXS
|
| 21 |
+
TCGA-A1-A0SP-01 WXS WXS WXS
|
| 22 |
+
TCGA-A1-A0SQ-01 WXS WXS WXS
|
| 23 |
+
TCGA-A2-A04N-01 WXS WXS WXS
|
| 24 |
+
TCGA-A2-A04P-01 WXS WXS WXS
|
| 25 |
+
TCGA-A2-A04Q-01 WXS WXS WXS
|
| 26 |
+
TCGA-A2-A04R-01 WXS WXS WXS
|
| 27 |
+
TCGA-A2-A04T-01 WXS WXS WXS
|
| 28 |
+
TCGA-A2-A04U-01 WXS WXS WXS
|
| 29 |
+
TCGA-A2-A04V-01 WXS WXS WXS
|
| 30 |
+
TCGA-A2-A04W-01 WXS WXS WXS
|
| 31 |
+
TCGA-A2-A04X-01 WXS WXS WXS
|
| 32 |
+
TCGA-A2-A04Y-01 WXS WXS WXS
|
| 33 |
+
TCGA-A2-A0CK-01 WXS WXS WXS
|
| 34 |
+
TCGA-A2-A0CL-01 WXS WXS WXS
|
| 35 |
+
TCGA-A2-A0CM-01 WXS WXS WXS
|
| 36 |
+
TCGA-A2-A0CO-01 WXS WXS WXS
|
| 37 |
+
TCGA-A2-A0CP-01 WXS WXS WXS
|
| 38 |
+
TCGA-A2-A0CQ-01 WXS WXS WXS
|
| 39 |
+
TCGA-A2-A0CR-01 WXS WXS WXS
|
| 40 |
+
TCGA-A2-A0CS-01 WXS WXS WXS
|
| 41 |
+
TCGA-A2-A0CT-01 WXS WXS WXS
|
| 42 |
+
TCGA-A2-A0CU-01 WXS WXS WXS
|
| 43 |
+
TCGA-A2-A0CV-01 WXS WXS WXS
|
| 44 |
+
TCGA-A2-A0CW-01 WXS WXS WXS
|
| 45 |
+
TCGA-A2-A0CX-01 WXS WXS WXS
|
| 46 |
+
TCGA-A2-A0CZ-01 WXS NA WXS
|
| 47 |
+
TCGA-A2-A0D0-01 WXS WXS WXS
|
| 48 |
+
TCGA-A2-A0D1-01 WXS WXS WXS
|
| 49 |
+
TCGA-A2-A0D2-01 WXS WXS WXS
|
| 50 |
+
TCGA-A2-A0D3-01 WXS WXS WXS
|
| 51 |
+
TCGA-A2-A0D4-01 WXS WXS WXS
|
| 52 |
+
TCGA-A2-A0EM-01 WXS WXS WXS
|
| 53 |
+
TCGA-A2-A0EN-01 WXS WXS WXS
|
| 54 |
+
TCGA-A2-A0EO-01 WXS WXS WXS
|
| 55 |
+
TCGA-A2-A0EP-01 WXS WXS WXS
|
| 56 |
+
TCGA-A2-A0EQ-01 WXS WXS WXS
|
| 57 |
+
TCGA-A2-A0ER-01 WXS WXS WXS
|
| 58 |
+
TCGA-A2-A0ES-01 WXS WXS WXS
|
| 59 |
+
TCGA-A2-A0ET-01 WXS WXS WXS
|
| 60 |
+
TCGA-A2-A0EU-01 WXS WXS WXS
|
| 61 |
+
TCGA-A2-A0EV-01 WXS WXS WXS
|
| 62 |
+
TCGA-A2-A0EW-01 WXS WXS WXS
|
| 63 |
+
TCGA-A2-A0EX-01 WXS WXS WXS
|
| 64 |
+
TCGA-A2-A0EY-01 WXS WXS WXS
|
| 65 |
+
TCGA-A2-A0ST-01 WXS WXS WXS
|
| 66 |
+
TCGA-A2-A0SU-01 WXS WXS WXS
|
| 67 |
+
TCGA-A2-A0SV-01 WXS WXS WXS
|
| 68 |
+
TCGA-A2-A0SW-01 WXS WXS WXS
|
| 69 |
+
TCGA-A2-A0SX-01 WXS WXS WXS
|
| 70 |
+
TCGA-A2-A0SY-01 WXS WXS WXS
|
| 71 |
+
TCGA-A2-A0T0-01 WXS WXS WXS
|
| 72 |
+
TCGA-A2-A0T1-01 WXS WXS WXS
|
| 73 |
+
TCGA-A2-A0T2-01 WXS WXS WXS
|
| 74 |
+
TCGA-A2-A0T3-01 WXS WXS WXS
|
| 75 |
+
TCGA-A2-A0T4-01 WXS WXS WXS
|
| 76 |
+
TCGA-A2-A0T5-01 WXS WXS WXS
|
| 77 |
+
TCGA-A2-A0T6-01 WXS WXS WXS
|
| 78 |
+
TCGA-A2-A0T7-01 WXS WXS WXS
|
| 79 |
+
TCGA-A2-A0YC-01 WXS WXS WXS
|
| 80 |
+
TCGA-A2-A0YD-01 WXS WXS WXS
|
| 81 |
+
TCGA-A2-A0YE-01 WXS WXS WXS
|
| 82 |
+
TCGA-A2-A0YF-01 WXS WXS WXS
|
| 83 |
+
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| 359 |
+
TCGA-AO-A0JM-01 WXS WXS WXS
|
| 360 |
+
TCGA-AO-A124-01 WXS WXS WXS
|
| 361 |
+
TCGA-AO-A125-01 WXS WXS WXS
|
| 362 |
+
TCGA-AO-A126-01 WXS WXS WXS
|
| 363 |
+
TCGA-AO-A128-01 WXS WXS WXS
|
| 364 |
+
TCGA-AO-A129-01 WXS WXS WXS
|
| 365 |
+
TCGA-AO-A12A-01 WXS WXS WXS
|
| 366 |
+
TCGA-AO-A12B-01 WXS WXS WXS
|
| 367 |
+
TCGA-AO-A12D-01 WXS WXS WXS
|
| 368 |
+
TCGA-AO-A12E-01 WXS WXS WXS
|
| 369 |
+
TCGA-AO-A12F-01 WXS WXS WXS
|
| 370 |
+
TCGA-AO-A12G-01 WXS WXS WXS
|
| 371 |
+
TCGA-AO-A12H-01 WXS WXS WXS
|
| 372 |
+
TCGA-AO-A1KO-01 WXS WXS WXS
|
| 373 |
+
TCGA-AO-A1KP-01 WXS WXS WXS
|
| 374 |
+
TCGA-AO-A1KQ-01 WXS WXS WXS
|
| 375 |
+
TCGA-AO-A1KR-01 WXS WXS WXS
|
| 376 |
+
TCGA-AO-A1KS-01 WXS WXS WXS
|
| 377 |
+
TCGA-AO-A1KT-01 WXS WXS WXS
|
| 378 |
+
TCGA-AQ-A04H-01 WXS WXS WXS
|
| 379 |
+
TCGA-AQ-A04J-01 WXS WXS WXS
|
| 380 |
+
TCGA-AQ-A04L-01 WXS WXS WXS
|
| 381 |
+
TCGA-AQ-A0Y5-01 WXS WXS WXS
|
| 382 |
+
TCGA-AQ-A1H2-01 WXS WXS WXS
|
| 383 |
+
TCGA-AQ-A1H3-01 WXS WXS WXS
|
| 384 |
+
TCGA-AQ-A54N-01 WXS WXS WXS
|
| 385 |
+
TCGA-AQ-A54O-01 WXS WXS WXS
|
| 386 |
+
TCGA-AQ-A7U7-01 WXS WXS WXS
|
| 387 |
+
TCGA-AR-A0TP-01 WXS WXS WXS
|
| 388 |
+
TCGA-AR-A0TQ-01 WXS WXS WXS
|
| 389 |
+
TCGA-AR-A0TR-01 WXS WXS WXS
|
| 390 |
+
TCGA-AR-A0TS-01 WXS WXS WXS
|
| 391 |
+
TCGA-AR-A0TT-01 WXS WXS WXS
|
| 392 |
+
TCGA-AR-A0TU-01 WXS NA WXS
|
| 393 |
+
TCGA-AR-A0TV-01 WXS WXS WXS
|
| 394 |
+
TCGA-AR-A0TW-01 WXS WXS WXS
|
| 395 |
+
TCGA-AR-A0TX-01 WXS WXS WXS
|
| 396 |
+
TCGA-AR-A0TY-01 WXS WXS WXS
|
| 397 |
+
TCGA-AR-A0TZ-01 WXS WXS WXS
|
| 398 |
+
TCGA-AR-A0U0-01 WXS WXS WXS
|
| 399 |
+
TCGA-AR-A0U1-01 WXS WXS WXS
|
| 400 |
+
TCGA-AR-A0U2-01 WXS WXS WXS
|
| 401 |
+
TCGA-AR-A0U3-01 WXS WXS WXS
|
| 402 |
+
TCGA-AR-A0U4-01 WXS WXS WXS
|
| 403 |
+
TCGA-AR-A1AH-01 WXS WXS WXS
|
| 404 |
+
TCGA-AR-A1AI-01 WXS WXS WXS
|
| 405 |
+
TCGA-AR-A1AJ-01 WXS WXS WXS
|
| 406 |
+
TCGA-AR-A1AK-01 WXS WXS WXS
|
| 407 |
+
TCGA-AR-A1AL-01 WXS WXS WXS
|
| 408 |
+
TCGA-AR-A1AM-01 NA WXS NA
|
| 409 |
+
TCGA-AR-A1AN-01 WXS WXS WXS
|
| 410 |
+
TCGA-AR-A1AO-01 WXS WXS WXS
|
| 411 |
+
TCGA-AR-A1AP-01 WXS WXS WXS
|
| 412 |
+
TCGA-AR-A1AQ-01 WXS WXS WXS
|
| 413 |
+
TCGA-AR-A1AR-01 WXS WXS WXS
|
| 414 |
+
TCGA-AR-A1AS-01 WXS WXS WXS
|
| 415 |
+
TCGA-AR-A1AT-01 WXS NA WXS
|
| 416 |
+
TCGA-AR-A1AU-01 WXS WXS WXS
|
| 417 |
+
TCGA-AR-A1AV-01 WXS WXS WXS
|
| 418 |
+
TCGA-AR-A1AW-01 WXS WXS WXS
|
| 419 |
+
TCGA-AR-A1AX-01 WXS WXS WXS
|
| 420 |
+
TCGA-AR-A1AY-01 WXS WXS WXS
|
| 421 |
+
TCGA-AR-A24H-01 WXS WXS WXS
|
| 422 |
+
TCGA-AR-A24K-01 WXS WXS WXS
|
| 423 |
+
TCGA-AR-A24L-01 WXS WXS WXS
|
| 424 |
+
TCGA-AR-A24M-01 WXS WXS WXS
|
| 425 |
+
TCGA-AR-A24N-01 WXS WXS WXS
|
| 426 |
+
TCGA-AR-A24O-01 WXS WXS WXS
|
| 427 |
+
TCGA-AR-A24P-01 WXS WXS WXS
|
| 428 |
+
TCGA-AR-A24Q-01 WXS WXS WXS
|
| 429 |
+
TCGA-AR-A24R-01 WXS WXS WXS
|
| 430 |
+
TCGA-AR-A24S-01 WXS WXS WXS
|
| 431 |
+
TCGA-AR-A24T-01 WXS WXS WXS
|
| 432 |
+
TCGA-AR-A24U-01 WXS WXS WXS
|
| 433 |
+
TCGA-AR-A24V-01 WXS WXS WXS
|
| 434 |
+
TCGA-AR-A24W-01 WXS WXS WXS
|
| 435 |
+
TCGA-AR-A24X-01 WXS WXS WXS
|
| 436 |
+
TCGA-AR-A24Z-01 WXS WXS WXS
|
| 437 |
+
TCGA-AR-A250-01 WXS WXS WXS
|
| 438 |
+
TCGA-AR-A251-01 WXS WXS WXS
|
| 439 |
+
TCGA-AR-A252-01 WXS WXS WXS
|
| 440 |
+
TCGA-AR-A254-01 WXS WXS WXS
|
| 441 |
+
TCGA-AR-A255-01 WXS WXS WXS
|
| 442 |
+
TCGA-AR-A256-01 WXS WXS WXS
|
| 443 |
+
TCGA-AR-A2LE-01 WXS WXS WXS
|
| 444 |
+
TCGA-AR-A2LH-01 WXS WXS WXS
|
| 445 |
+
TCGA-AR-A2LJ-01 WXS WXS WXS
|
| 446 |
+
TCGA-AR-A2LK-01 WXS WXS WXS
|
| 447 |
+
TCGA-AR-A2LM-01 WXS WXS WXS
|
| 448 |
+
TCGA-AR-A2LN-01 WXS WXS WXS
|
| 449 |
+
TCGA-AR-A2LO-01 WXS WXS WXS
|
| 450 |
+
TCGA-AR-A2LQ-01 WXS WXS WXS
|
| 451 |
+
TCGA-AR-A5QM-01 WXS WXS WXS
|
| 452 |
+
TCGA-AR-A5QN-01 WXS WXS WXS
|
| 453 |
+
TCGA-AR-A5QP-01 WXS WXS WXS
|
| 454 |
+
TCGA-AR-A5QQ-01 WXS WXS WXS
|
| 455 |
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TCGA-B6-A0I1-01 WXS WXS WXS
|
| 456 |
+
TCGA-B6-A0I2-01 WXS WXS WXS
|
| 457 |
+
TCGA-B6-A0I5-01 WXS WXS WXS
|
| 458 |
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TCGA-B6-A0I6-01 WXS NA WXS
|
| 459 |
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TCGA-B6-A0I8-01 WXS NA WXS
|
| 460 |
+
TCGA-B6-A0I9-01 WXS WXS WXS
|
| 461 |
+
TCGA-B6-A0IA-01 WXS WXS WXS
|
| 462 |
+
TCGA-B6-A0IB-01 WXS WXS WXS
|
| 463 |
+
TCGA-B6-A0IC-01 WXS WXS WXS
|
| 464 |
+
TCGA-B6-A0IE-01 WXS WXS WXS
|
| 465 |
+
TCGA-B6-A0IG-01 WXS WXS WXS
|
| 466 |
+
TCGA-B6-A0IH-01 WXS WXS WXS
|
| 467 |
+
TCGA-B6-A0IJ-01 WXS WXS WXS
|
| 468 |
+
TCGA-B6-A0IK-01 WXS WXS WXS
|
| 469 |
+
TCGA-B6-A0IM-01 WXS WXS WXS
|
| 470 |
+
TCGA-B6-A0IN-01 WXS WXS WXS
|
| 471 |
+
TCGA-B6-A0IO-01 WXS WXS WXS
|
| 472 |
+
TCGA-B6-A0IP-01 WXS WXS WXS
|
| 473 |
+
TCGA-B6-A0IQ-01 WXS WXS WXS
|
| 474 |
+
TCGA-B6-A0RE-01 WXS WXS WXS
|
| 475 |
+
TCGA-B6-A0RG-01 WXS WXS WXS
|
| 476 |
+
TCGA-B6-A0RH-01 WXS WXS WXS
|
| 477 |
+
TCGA-B6-A0RI-01 WXS WXS WXS
|
| 478 |
+
TCGA-B6-A0RL-01 WXS WXS WXS
|
| 479 |
+
TCGA-B6-A0RM-01 WXS WXS WXS
|
| 480 |
+
TCGA-B6-A0RN-01 WXS WXS WXS
|
| 481 |
+
TCGA-B6-A0RO-01 WXS WXS WXS
|
| 482 |
+
TCGA-B6-A0RP-01 WXS WXS WXS
|
| 483 |
+
TCGA-B6-A0RQ-01 WXS WXS WXS
|
| 484 |
+
TCGA-B6-A0RS-01 WXS WXS WXS
|
| 485 |
+
TCGA-B6-A0RT-01 WXS WXS WXS
|
| 486 |
+
TCGA-B6-A0RU-01 WXS WXS WXS
|
| 487 |
+
TCGA-B6-A0RV-01 WXS WXS WXS
|
| 488 |
+
TCGA-B6-A0WS-01 WXS WXS WXS
|
| 489 |
+
TCGA-B6-A0WT-01 WXS WXS WXS
|
| 490 |
+
TCGA-B6-A0WV-01 WXS WXS WXS
|
| 491 |
+
TCGA-B6-A0WW-01 WXS WXS WXS
|
| 492 |
+
TCGA-B6-A0WX-01 WXS WXS WXS
|
| 493 |
+
TCGA-B6-A0WY-01 WXS WXS WXS
|
| 494 |
+
TCGA-B6-A0WZ-01 WXS WXS WXS
|
| 495 |
+
TCGA-B6-A0X0-01 WXS WXS WXS
|
| 496 |
+
TCGA-B6-A0X1-01 WXS WXS WXS
|
| 497 |
+
TCGA-B6-A0X4-01 WXS WXS WXS
|
| 498 |
+
TCGA-B6-A0X5-01 WXS WXS WXS
|
| 499 |
+
TCGA-B6-A0X7-01 WXS WXS WXS
|
| 500 |
+
TCGA-B6-A1KC-01 WXS WXS WXS
|
| 501 |
+
TCGA-B6-A1KF-01 WXS WXS WXS
|
| 502 |
+
TCGA-B6-A1KI-01 WXS WXS WXS
|
| 503 |
+
TCGA-B6-A1KN-01 WXS WXS WXS
|
| 504 |
+
TCGA-B6-A2IU-01 WXS WXS WXS
|
| 505 |
+
TCGA-B6-A3ZX-01 WXS WXS WXS
|
| 506 |
+
TCGA-B6-A400-01 WXS WXS WXS
|
| 507 |
+
TCGA-B6-A401-01 WXS WXS WXS
|
| 508 |
+
TCGA-B6-A402-01 WXS WXS WXS
|
| 509 |
+
TCGA-B6-A408-01 WXS WXS WXS
|
| 510 |
+
TCGA-B6-A409-01 WXS WXS WXS
|
| 511 |
+
TCGA-B6-A40B-01 WXS WXS WXS
|
| 512 |
+
TCGA-B6-A40C-01 WXS WXS WXS
|
| 513 |
+
TCGA-BH-A0AU-01 WXS WXS WXS
|
| 514 |
+
TCGA-BH-A0AV-01 WXS WXS WXS
|
| 515 |
+
TCGA-BH-A0AW-01 WXS WXS WXS
|
| 516 |
+
TCGA-BH-A0AY-01 WXS WXS WXS
|
| 517 |
+
TCGA-BH-A0AZ-01 WXS WXS WXS
|
| 518 |
+
TCGA-BH-A0B0-01 WXS WXS WXS
|
| 519 |
+
TCGA-BH-A0B1-01 WXS NA WXS
|
| 520 |
+
TCGA-BH-A0B2-01 WXS WXS WXS
|
| 521 |
+
TCGA-BH-A0B3-01 WXS WXS WXS
|
| 522 |
+
TCGA-BH-A0B4-01 WXS WXS WXS
|
| 523 |
+
TCGA-BH-A0B5-01 WXS WXS WXS
|
| 524 |
+
TCGA-BH-A0B7-01 WXS WXS WXS
|
| 525 |
+
TCGA-BH-A0B8-01 WXS NA WXS
|
| 526 |
+
TCGA-BH-A0B9-01 WXS WXS WXS
|
| 527 |
+
TCGA-BH-A0BA-01 WXS WXS WXS
|
| 528 |
+
TCGA-BH-A0BC-01 WXS WXS WXS
|
| 529 |
+
TCGA-BH-A0BD-01 WXS WXS WXS
|
| 530 |
+
TCGA-BH-A0BF-01 WXS WXS WXS
|
| 531 |
+
TCGA-BH-A0BG-01 WXS WXS WXS
|
| 532 |
+
TCGA-BH-A0BJ-01 WXS WXS WXS
|
| 533 |
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TCGA-BH-A0BL-01 WXS WXS WXS
|
| 534 |
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TCGA-BH-A0BM-01 WXS WXS WXS
|
| 535 |
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TCGA-BH-A0BO-01 WXS WXS WXS
|
| 536 |
+
TCGA-BH-A0BP-01 WXS WXS WXS
|
| 537 |
+
TCGA-BH-A0BQ-01 WXS WXS WXS
|
| 538 |
+
TCGA-BH-A0BR-01 WXS WXS WXS
|
| 539 |
+
TCGA-BH-A0BS-01 WXS WXS WXS
|
| 540 |
+
TCGA-BH-A0BT-01 WXS WXS WXS
|
| 541 |
+
TCGA-BH-A0BV-01 WXS WXS WXS
|
| 542 |
+
TCGA-BH-A0BW-01 WXS WXS WXS
|
| 543 |
+
TCGA-BH-A0BZ-01 WXS WXS WXS
|
| 544 |
+
TCGA-BH-A0C0-01 WXS WXS WXS
|
| 545 |
+
TCGA-BH-A0C1-01 WXS WXS WXS
|
| 546 |
+
TCGA-BH-A0C3-01 WXS WXS WXS
|
| 547 |
+
TCGA-BH-A0C7-01 WXS WXS WXS
|
| 548 |
+
TCGA-BH-A0DD-01 WXS WXS WXS
|
| 549 |
+
TCGA-BH-A0DE-01 WXS WXS WXS
|
| 550 |
+
TCGA-BH-A0DG-01 WXS WXS WXS
|
| 551 |
+
TCGA-BH-A0DH-01 WXS WXS WXS
|
| 552 |
+
TCGA-BH-A0DI-01 WXS WXS WXS
|
| 553 |
+
TCGA-BH-A0DK-01 WXS WXS WXS
|
| 554 |
+
TCGA-BH-A0DL-01 WXS WXS WXS
|
| 555 |
+
TCGA-BH-A0DO-01 WXS WXS WXS
|
| 556 |
+
TCGA-BH-A0DP-01 WXS WXS WXS
|
| 557 |
+
TCGA-BH-A0DQ-01 WXS WXS WXS
|
| 558 |
+
TCGA-BH-A0DS-01 WXS WXS WXS
|
| 559 |
+
TCGA-BH-A0DT-01 WXS WXS WXS
|
| 560 |
+
TCGA-BH-A0DV-01 WXS WXS WXS
|
| 561 |
+
TCGA-BH-A0DX-01 WXS WXS WXS
|
| 562 |
+
TCGA-BH-A0DZ-01 WXS WXS WXS
|
| 563 |
+
TCGA-BH-A0E0-01 WXS WXS WXS
|
| 564 |
+
TCGA-BH-A0E1-01 WXS WXS WXS
|
| 565 |
+
TCGA-BH-A0E2-01 WXS WXS WXS
|
| 566 |
+
TCGA-BH-A0E6-01 WXS WXS WXS
|
| 567 |
+
TCGA-BH-A0E7-01 WXS WXS WXS
|
| 568 |
+
TCGA-BH-A0E9-01 WXS WXS WXS
|
| 569 |
+
TCGA-BH-A0EA-01 WXS WXS WXS
|
| 570 |
+
TCGA-BH-A0EB-01 WXS WXS WXS
|
| 571 |
+
TCGA-BH-A0EE-01 WXS WXS WXS
|
| 572 |
+
TCGA-BH-A0EI-01 WXS WXS WXS
|
| 573 |
+
TCGA-BH-A0GY-01 WXS WXS WXS
|
| 574 |
+
TCGA-BH-A0GZ-01 WXS WXS WXS
|
| 575 |
+
TCGA-BH-A0H0-01 WXS WXS WXS
|
| 576 |
+
TCGA-BH-A0H3-01 WXS WXS WXS
|
| 577 |
+
TCGA-BH-A0H5-01 WXS WXS WXS
|
| 578 |
+
TCGA-BH-A0H6-01 WXS WXS WXS
|
| 579 |
+
TCGA-BH-A0H7-01 WXS WXS WXS
|
| 580 |
+
TCGA-BH-A0H9-01 WXS WXS WXS
|
| 581 |
+
TCGA-BH-A0HA-01 WXS WXS WXS
|
| 582 |
+
TCGA-BH-A0HB-01 WXS WXS WXS
|
| 583 |
+
TCGA-BH-A0HF-01 WXS NA WXS
|
| 584 |
+
TCGA-BH-A0HI-01 WXS WXS WXS
|
| 585 |
+
TCGA-BH-A0HK-01 WXS WXS WXS
|
| 586 |
+
TCGA-BH-A0HL-01 WXS NA WXS
|
| 587 |
+
TCGA-BH-A0HN-01 WXS NA WXS
|
| 588 |
+
TCGA-BH-A0HO-01 WXS WXS WXS
|
| 589 |
+
TCGA-BH-A0HP-01 WXS WXS WXS
|
| 590 |
+
TCGA-BH-A0HQ-01 WXS WXS WXS
|
| 591 |
+
TCGA-BH-A0HU-01 WXS WXS WXS
|
| 592 |
+
TCGA-BH-A0HW-01 WXS WXS WXS
|
| 593 |
+
TCGA-BH-A0HX-01 WXS WXS WXS
|
| 594 |
+
TCGA-BH-A0HY-01 WXS WXS WXS
|
| 595 |
+
TCGA-BH-A0RX-01 WXS WXS WXS
|
| 596 |
+
TCGA-BH-A0W3-01 WXS WXS WXS
|
| 597 |
+
TCGA-BH-A0W4-01 WXS WXS WXS
|
| 598 |
+
TCGA-BH-A0W5-01 WXS WXS WXS
|
| 599 |
+
TCGA-BH-A0W7-01 WXS WXS WXS
|
| 600 |
+
TCGA-BH-A0WA-01 WXS WXS WXS
|
| 601 |
+
TCGA-BH-A18F-01 WXS WXS WXS
|
| 602 |
+
TCGA-BH-A18G-01 WXS WXS WXS
|
| 603 |
+
TCGA-BH-A18H-01 WXS WXS WXS
|
| 604 |
+
TCGA-BH-A18I-01 WXS WXS WXS
|
| 605 |
+
TCGA-BH-A18J-01 WXS WXS WXS
|
| 606 |
+
TCGA-BH-A18K-01 WXS WXS WXS
|
| 607 |
+
TCGA-BH-A18L-01 WXS WXS WXS
|
| 608 |
+
TCGA-BH-A18M-01 WXS WXS WXS
|
| 609 |
+
TCGA-BH-A18N-01 WXS WXS WXS
|
| 610 |
+
TCGA-BH-A18P-01 WXS WXS WXS
|
| 611 |
+
TCGA-BH-A18Q-01 WXS WXS WXS
|
| 612 |
+
TCGA-BH-A18R-01 WXS WXS WXS
|
| 613 |
+
TCGA-BH-A18S-01 WXS WXS WXS
|
| 614 |
+
TCGA-BH-A18T-01 WXS WXS WXS
|
| 615 |
+
TCGA-BH-A18U-01 WXS WXS WXS
|
| 616 |
+
TCGA-BH-A18V-01 WXS WXS WXS
|
| 617 |
+
TCGA-BH-A1EN-01 WXS WXS WXS
|
| 618 |
+
TCGA-BH-A1EO-01 WXS WXS WXS
|
| 619 |
+
TCGA-BH-A1ES-01 WXS WXS WXS
|
| 620 |
+
TCGA-BH-A1ET-01 WXS WXS WXS
|
| 621 |
+
TCGA-BH-A1EU-01 WXS WXS WXS
|
| 622 |
+
TCGA-BH-A1EV-01 WXS WXS WXS
|
| 623 |
+
TCGA-BH-A1EW-01 WXS WXS WXS
|
| 624 |
+
TCGA-BH-A1EX-01 WXS WXS WXS
|
| 625 |
+
TCGA-BH-A1EY-01 WXS WXS WXS
|
| 626 |
+
TCGA-BH-A1F0-01 WXS WXS WXS
|
| 627 |
+
TCGA-BH-A1F2-01 WXS WXS WXS
|
| 628 |
+
TCGA-BH-A1F5-01 WXS WXS WXS
|
| 629 |
+
TCGA-BH-A1F6-01 WXS WXS WXS
|
| 630 |
+
TCGA-BH-A1F8-01 WXS WXS WXS
|
| 631 |
+
TCGA-BH-A1FB-01 WXS WXS WXS
|
| 632 |
+
TCGA-BH-A1FC-01 WXS WXS WXS
|
| 633 |
+
TCGA-BH-A1FD-01 WXS WXS WXS
|
| 634 |
+
TCGA-BH-A1FE-01 WXS WXS WXS
|
| 635 |
+
TCGA-BH-A1FG-01 WXS WXS WXS
|
| 636 |
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| 733 |
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| 734 |
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| 735 |
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| 736 |
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| 738 |
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| 742 |
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| 758 |
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| 759 |
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| 760 |
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| 765 |
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| 767 |
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| 769 |
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| 770 |
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| 771 |
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| 772 |
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| 774 |
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| 775 |
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| 776 |
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| 777 |
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| 778 |
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| 779 |
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| 781 |
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| 782 |
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| 783 |
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| 784 |
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| 785 |
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| 786 |
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| 787 |
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| 788 |
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| 789 |
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| 790 |
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| 791 |
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| 792 |
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| 793 |
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| 794 |
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| 795 |
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| 796 |
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| 797 |
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| 799 |
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| 802 |
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| 803 |
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| 804 |
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| 805 |
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| 806 |
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| 807 |
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| 808 |
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| 809 |
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| 810 |
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| 811 |
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| 812 |
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| 813 |
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| 814 |
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| 815 |
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| 818 |
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| 819 |
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| 821 |
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| 822 |
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| 823 |
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| 824 |
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| 825 |
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| 826 |
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| 827 |
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| 828 |
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| 829 |
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| 830 |
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| 831 |
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| 832 |
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| 833 |
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| 834 |
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| 835 |
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| 836 |
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| 837 |
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| 838 |
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| 839 |
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| 840 |
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|
| 841 |
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| 842 |
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| 843 |
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| 844 |
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| 845 |
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| 846 |
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| 847 |
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| 848 |
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| 849 |
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| 850 |
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| 851 |
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| 852 |
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| 853 |
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| 854 |
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| 855 |
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| 856 |
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| 857 |
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| 858 |
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| 859 |
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| 860 |
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| 861 |
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| 862 |
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| 863 |
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| 864 |
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| 865 |
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| 866 |
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| 867 |
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| 868 |
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| 869 |
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| 870 |
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| 871 |
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| 872 |
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| 873 |
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| 874 |
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| 875 |
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| 876 |
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| 877 |
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| 878 |
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| 879 |
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| 880 |
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| 881 |
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| 882 |
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TCGA-E9-A1N9-01 WXS WXS WXS
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| 883 |
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| 884 |
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| 885 |
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| 886 |
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| 887 |
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TCGA-E9-A1NF-01 WXS WXS WXS
|
| 888 |
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| 889 |
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| 890 |
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| 891 |
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| 892 |
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| 893 |
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| 894 |
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TCGA-E9-A1R3-01 WXS WXS WXS
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| 895 |
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TCGA-E9-A1R4-01 WXS WXS WXS
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| 896 |
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TCGA-E9-A1R5-01 WXS WXS WXS
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| 897 |
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TCGA-E9-A1R6-01 WXS WXS WXS
|
| 898 |
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TCGA-E9-A1R7-01 WXS WXS WXS
|
| 899 |
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TCGA-E9-A1RA-01 WXS WXS WXS
|
| 900 |
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TCGA-E9-A1RB-01 WXS WXS WXS
|
| 901 |
+
TCGA-E9-A1RC-01 WXS WXS WXS
|
| 902 |
+
TCGA-E9-A1RD-01 WXS WXS WXS
|
| 903 |
+
TCGA-E9-A1RE-01 WXS WXS WXS
|
| 904 |
+
TCGA-E9-A1RF-01 WXS WXS WXS
|
| 905 |
+
TCGA-E9-A1RG-01 WXS WXS WXS
|
| 906 |
+
TCGA-E9-A1RH-01 WXS WXS WXS
|
| 907 |
+
TCGA-E9-A1RI-01 WXS WXS WXS
|
| 908 |
+
TCGA-E9-A226-01 WXS WXS WXS
|
| 909 |
+
TCGA-E9-A227-01 WXS WXS WXS
|
| 910 |
+
TCGA-E9-A228-01 WXS WXS WXS
|
| 911 |
+
TCGA-E9-A229-01 WXS WXS WXS
|
| 912 |
+
TCGA-E9-A22A-01 WXS WXS WXS
|
| 913 |
+
TCGA-E9-A22B-01 WXS WXS WXS
|
| 914 |
+
TCGA-E9-A22D-01 WXS WXS WXS
|
| 915 |
+
TCGA-E9-A22E-01 WXS WXS WXS
|
| 916 |
+
TCGA-E9-A22G-01 WXS WXS WXS
|
| 917 |
+
TCGA-E9-A22H-01 WXS WXS WXS
|
| 918 |
+
TCGA-E9-A243-01 WXS WXS WXS
|
| 919 |
+
TCGA-E9-A244-01 WXS WXS WXS
|
| 920 |
+
TCGA-E9-A245-01 WXS WXS WXS
|
| 921 |
+
TCGA-E9-A247-01 WXS WXS WXS
|
| 922 |
+
TCGA-E9-A248-01 WXS WXS WXS
|
| 923 |
+
TCGA-E9-A249-01 WXS WXS WXS
|
| 924 |
+
TCGA-E9-A24A-01 WXS WXS WXS
|
| 925 |
+
TCGA-E9-A295-01 WXS WXS WXS
|
| 926 |
+
TCGA-E9-A2JS-01 WXS WXS WXS
|
| 927 |
+
TCGA-E9-A2JT-01 WXS WXS WXS
|
| 928 |
+
TCGA-E9-A3HO-01 WXS WXS WXS
|
| 929 |
+
TCGA-E9-A3Q9-01 WXS WXS WXS
|
| 930 |
+
TCGA-E9-A3QA-01 WXS WXS WXS
|
| 931 |
+
TCGA-E9-A3X8-01 WXS WXS WXS
|
| 932 |
+
TCGA-E9-A54X-01 WXS WXS WXS
|
| 933 |
+
TCGA-E9-A54Y-01 WXS WXS WXS
|
| 934 |
+
TCGA-E9-A5FK-01 WXS WXS WXS
|
| 935 |
+
TCGA-E9-A5FL-01 WXS WXS WXS
|
| 936 |
+
TCGA-E9-A5UO-01 WXS WXS WXS
|
| 937 |
+
TCGA-E9-A5UP-01 WXS WXS WXS
|
| 938 |
+
TCGA-E9-A6HE-01 WXS WXS WXS
|
| 939 |
+
TCGA-EW-A1IW-01 WXS WXS WXS
|
| 940 |
+
TCGA-EW-A1IX-01 WXS WXS WXS
|
| 941 |
+
TCGA-EW-A1IY-01 WXS WXS WXS
|
| 942 |
+
TCGA-EW-A1IZ-01 WXS WXS WXS
|
| 943 |
+
TCGA-EW-A1J1-01 WXS WXS WXS
|
| 944 |
+
TCGA-EW-A1J2-01 WXS WXS WXS
|
| 945 |
+
TCGA-EW-A1J3-01 WXS WXS WXS
|
| 946 |
+
TCGA-EW-A1J5-01 WXS WXS WXS
|
| 947 |
+
TCGA-EW-A1J6-01 WXS WXS WXS
|
| 948 |
+
TCGA-EW-A1OV-01 WXS WXS WXS
|
| 949 |
+
TCGA-EW-A1OW-01 WXS WXS WXS
|
| 950 |
+
TCGA-EW-A1OX-01 WXS WXS WXS
|
| 951 |
+
TCGA-EW-A1OY-01 WXS WXS WXS
|
| 952 |
+
TCGA-EW-A1OZ-01 WXS WXS WXS
|
| 953 |
+
TCGA-EW-A1P0-01 WXS WXS WXS
|
| 954 |
+
TCGA-EW-A1P1-01 WXS WXS WXS
|
| 955 |
+
TCGA-EW-A1P3-01 WXS WXS WXS
|
| 956 |
+
TCGA-EW-A1P4-01 WXS WXS WXS
|
| 957 |
+
TCGA-EW-A1P5-01 WXS WXS WXS
|
| 958 |
+
TCGA-EW-A1P6-01 WXS WXS WXS
|
| 959 |
+
TCGA-EW-A1P7-01 WXS WXS WXS
|
| 960 |
+
TCGA-EW-A1P8-01 WXS WXS WXS
|
| 961 |
+
TCGA-EW-A1PA-01 WXS WXS WXS
|
| 962 |
+
TCGA-EW-A1PB-01 WXS WXS WXS
|
| 963 |
+
TCGA-EW-A1PC-01 WXS WXS WXS
|
| 964 |
+
TCGA-EW-A1PD-01 WXS WXS WXS
|
| 965 |
+
TCGA-EW-A1PE-01 WXS WXS WXS
|
| 966 |
+
TCGA-EW-A1PF-01 WXS WXS WXS
|
| 967 |
+
TCGA-EW-A1PG-01 WXS WXS WXS
|
| 968 |
+
TCGA-EW-A1PH-01 WXS WXS WXS
|
| 969 |
+
TCGA-EW-A2FR-01 WXS WXS WXS
|
| 970 |
+
TCGA-EW-A2FS-01 WXS WXS WXS
|
| 971 |
+
TCGA-EW-A2FV-01 WXS WXS WXS
|
| 972 |
+
TCGA-EW-A2FW-01 WXS WXS WXS
|
| 973 |
+
TCGA-EW-A3E8-01 WXS WXS WXS
|
| 974 |
+
TCGA-EW-A3U0-01 WXS WXS WXS
|
| 975 |
+
TCGA-EW-A423-01 WXS WXS WXS
|
| 976 |
+
TCGA-EW-A424-01 WXS WXS WXS
|
| 977 |
+
TCGA-EW-A6S9-01 WXS WXS WXS
|
| 978 |
+
TCGA-EW-A6SA-01 WXS WXS WXS
|
| 979 |
+
TCGA-EW-A6SB-01 WXS WXS WXS
|
| 980 |
+
TCGA-EW-A6SC-01 WXS WXS WXS
|
| 981 |
+
TCGA-EW-A6SD-01 WXS WXS WXS
|
| 982 |
+
TCGA-GI-A2C8-01 WXS WXS WXS
|
| 983 |
+
TCGA-GI-A2C9-01 WXS WXS WXS
|
| 984 |
+
TCGA-GM-A2D9-01 WXS WXS WXS
|
| 985 |
+
TCGA-GM-A2DA-01 WXS WXS WXS
|
| 986 |
+
TCGA-GM-A2DB-01 WXS WXS WXS
|
| 987 |
+
TCGA-GM-A2DC-01 WXS WXS WXS
|
| 988 |
+
TCGA-GM-A2DD-01 WXS WXS WXS
|
| 989 |
+
TCGA-GM-A2DF-01 WXS WXS WXS
|
| 990 |
+
TCGA-GM-A2DH-01 WXS WXS WXS
|
| 991 |
+
TCGA-GM-A2DI-01 WXS WXS WXS
|
| 992 |
+
TCGA-GM-A2DK-01 WXS WXS WXS
|
| 993 |
+
TCGA-GM-A2DL-01 WXS WXS WXS
|
| 994 |
+
TCGA-GM-A2DM-01 WXS WXS WXS
|
| 995 |
+
TCGA-GM-A2DN-01 WXS WXS WXS
|
| 996 |
+
TCGA-GM-A2DO-01 WXS WXS WXS
|
| 997 |
+
TCGA-GM-A3NW-01 WXS WXS WXS
|
| 998 |
+
TCGA-GM-A3NY-01 WXS WXS WXS
|
| 999 |
+
TCGA-GM-A3XG-01 NA WXS NA
|
| 1000 |
+
TCGA-GM-A3XL-01 WXS WXS WXS
|
| 1001 |
+
TCGA-GM-A3XN-01 NA WXS NA
|
| 1002 |
+
TCGA-GM-A4E0-01 WXS WXS WXS
|
| 1003 |
+
TCGA-GM-A5PV-01 WXS WXS WXS
|
| 1004 |
+
TCGA-GM-A5PX-01 WXS WXS WXS
|
| 1005 |
+
TCGA-HN-A2NL-01 WXS WXS WXS
|
| 1006 |
+
TCGA-HN-A2OB-01 WXS WXS WXS
|
| 1007 |
+
TCGA-JL-A3YW-01 WXS WXS WXS
|
| 1008 |
+
TCGA-JL-A3YX-01 WXS WXS WXS
|
| 1009 |
+
TCGA-LD-A66U-01 WXS WXS WXS
|
| 1010 |
+
TCGA-LD-A74U-01 WXS WXS WXS
|
| 1011 |
+
TCGA-LD-A7W5-01 WXS WXS WXS
|
| 1012 |
+
TCGA-LD-A7W6-01 WXS WXS WXS
|
| 1013 |
+
TCGA-LD-A9QF-01 WXS WXS WXS
|
| 1014 |
+
TCGA-LL-A440-01 WXS WXS WXS
|
| 1015 |
+
TCGA-LL-A441-01 WXS WXS WXS
|
| 1016 |
+
TCGA-LL-A442-01 NA WXS NA
|
| 1017 |
+
TCGA-LL-A50Y-01 WXS WXS WXS
|
| 1018 |
+
TCGA-LL-A5YL-01 WXS WXS WXS
|
| 1019 |
+
TCGA-LL-A5YM-01 WXS WXS WXS
|
| 1020 |
+
TCGA-LL-A5YN-01 WXS WXS WXS
|
| 1021 |
+
TCGA-LL-A5YO-01 WXS WXS WXS
|
| 1022 |
+
TCGA-LL-A5YP-01 WXS WXS WXS
|
| 1023 |
+
TCGA-LL-A6FP-01 WXS WXS WXS
|
| 1024 |
+
TCGA-LL-A6FQ-01 WXS WXS WXS
|
| 1025 |
+
TCGA-LL-A6FR-01 WXS WXS WXS
|
| 1026 |
+
TCGA-LL-A73Y-01 WXS WXS WXS
|
| 1027 |
+
TCGA-LL-A73Z-01 WXS WXS WXS
|
| 1028 |
+
TCGA-LL-A740-01 WXS WXS WXS
|
| 1029 |
+
TCGA-LL-A7SZ-01 WXS WXS WXS
|
| 1030 |
+
TCGA-LL-A7T0-01 WXS WXS WXS
|
| 1031 |
+
TCGA-LL-A8F5-01 WXS WXS WXS
|
| 1032 |
+
TCGA-LL-A9Q3-01 WXS WXS WXS
|
| 1033 |
+
TCGA-LQ-A4E4-01 NA WXS NA
|
| 1034 |
+
TCGA-MS-A51U-01 WXS WXS WXS
|
| 1035 |
+
TCGA-OK-A5Q2-01 WXS WXS WXS
|
| 1036 |
+
TCGA-OL-A5D6-01 WXS WXS WXS
|
| 1037 |
+
TCGA-OL-A5D7-01 WXS WXS WXS
|
| 1038 |
+
TCGA-OL-A5D8-01 WXS WXS WXS
|
| 1039 |
+
TCGA-OL-A5DA-01 WXS WXS WXS
|
| 1040 |
+
TCGA-OL-A5RU-01 WXS WXS WXS
|
| 1041 |
+
TCGA-OL-A5RV-01 WXS WXS WXS
|
| 1042 |
+
TCGA-OL-A5RW-01 WXS WXS WXS
|
| 1043 |
+
TCGA-OL-A5RX-01 WXS WXS WXS
|
| 1044 |
+
TCGA-OL-A5RY-01 WXS WXS WXS
|
| 1045 |
+
TCGA-OL-A5RZ-01 WXS WXS WXS
|
| 1046 |
+
TCGA-OL-A5S0-01 WXS WXS WXS
|
| 1047 |
+
TCGA-OL-A66H-01 WXS WXS WXS
|
| 1048 |
+
TCGA-OL-A66I-01 WXS WXS WXS
|
| 1049 |
+
TCGA-OL-A66J-01 WXS WXS WXS
|
| 1050 |
+
TCGA-OL-A66K-01 WXS WXS WXS
|
| 1051 |
+
TCGA-OL-A66L-01 WXS WXS WXS
|
| 1052 |
+
TCGA-OL-A66N-01 WXS WXS WXS
|
| 1053 |
+
TCGA-OL-A66O-01 WXS WXS WXS
|
| 1054 |
+
TCGA-OL-A66P-01 WXS WXS WXS
|
| 1055 |
+
TCGA-OL-A6VO-01 WXS WXS WXS
|
| 1056 |
+
TCGA-OL-A6VQ-01 WXS WXS WXS
|
| 1057 |
+
TCGA-OL-A6VR-01 WXS WXS WXS
|
| 1058 |
+
TCGA-OL-A97C-01 WXS WXS WXS
|
| 1059 |
+
TCGA-PE-A5DC-01 WXS WXS WXS
|
| 1060 |
+
TCGA-PE-A5DD-01 WXS WXS WXS
|
| 1061 |
+
TCGA-PE-A5DE-01 WXS WXS WXS
|
| 1062 |
+
TCGA-PL-A8LV-01 WXS WXS WXS
|
| 1063 |
+
TCGA-PL-A8LX-01 WXS WXS WXS
|
| 1064 |
+
TCGA-PL-A8LY-01 WXS WXS WXS
|
| 1065 |
+
TCGA-PL-A8LZ-01 WXS WXS WXS
|
| 1066 |
+
TCGA-S3-A6ZF-01 WXS WXS WXS
|
| 1067 |
+
TCGA-S3-A6ZG-01 WXS WXS WXS
|
| 1068 |
+
TCGA-S3-A6ZH-01 WXS WXS WXS
|
| 1069 |
+
TCGA-S3-AA0Z-01 WXS WXS WXS
|
| 1070 |
+
TCGA-S3-AA10-01 WXS WXS WXS
|
| 1071 |
+
TCGA-S3-AA11-01 WXS WXS WXS
|
| 1072 |
+
TCGA-S3-AA12-01 WXS WXS WXS
|
| 1073 |
+
TCGA-S3-AA14-01 WXS WXS WXS
|
| 1074 |
+
TCGA-S3-AA15-01 WXS WXS WXS
|
| 1075 |
+
TCGA-S3-AA17-01 WXS WXS WXS
|
| 1076 |
+
TCGA-UL-AAZ6-01 WXS WXS WXS
|
| 1077 |
+
TCGA-UU-A93S-01 WXS WXS WXS
|
| 1078 |
+
TCGA-V7-A7HQ-01 WXS WXS WXS
|
| 1079 |
+
TCGA-W8-A86G-01 WXS WXS WXS
|
| 1080 |
+
TCGA-WT-AB41-01 WXS WXS WXS
|
| 1081 |
+
TCGA-WT-AB44-01 WXS WXS WXS
|
| 1082 |
+
TCGA-XX-A899-01 WXS WXS WXS
|
| 1083 |
+
TCGA-XX-A89A-01 WXS WXS WXS
|
| 1084 |
+
TCGA-Z7-A8R5-01 WXS WXS WXS
|
| 1085 |
+
TCGA-Z7-A8R6-01 WXS WXS WXS
|
initial_data/brca_tcga_pan_can_atlas_2018/data_genetic_ancestry.txt
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
ENTITY_STABLE_ID NAME TCGA-3C-AAAU-01 TCGA-3C-AALI-01 TCGA-3C-AALJ-01 TCGA-3C-AALK-01 TCGA-4H-AAAK-01 TCGA-5L-AAT0-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CK-01 TCGA-A2-A0CM-01 TCGA-A2-A0CO-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CR-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 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TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LE-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E2-A1LS-01 TCGA-E2-A2P5-01 TCGA-E2-A2P6-01 TCGA-E2-A3DX-01 TCGA-E2-A56Z-01 TCGA-E2-A570-01 TCGA-E2-A573-01 TCGA-E2-A574-01 TCGA-E2-A576-01 TCGA-E2-A9RU-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-E9-A2JS-01 TCGA-E9-A2JT-01 TCGA-E9-A3HO-01 TCGA-E9-A3Q9-01 TCGA-E9-A3QA-01 TCGA-E9-A3X8-01 TCGA-E9-A54X-01 TCGA-E9-A54Y-01 TCGA-E9-A5FK-01 TCGA-E9-A5FL-01 TCGA-E9-A5UO-01 TCGA-E9-A5UP-01 TCGA-E9-A6HE-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PC-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FR-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-EW-A3E8-01 TCGA-EW-A3U0-01 TCGA-EW-A423-01 TCGA-EW-A424-01 TCGA-EW-A6S9-01 TCGA-EW-A6SA-01 TCGA-EW-A6SB-01 TCGA-EW-A6SC-01 TCGA-EW-A6SD-01 TCGA-GI-A2C8-01 TCGA-GI-A2C9-01 TCGA-GM-A2D9-01 TCGA-GM-A2DA-01 TCGA-GM-A2DB-01 TCGA-GM-A2DC-01 TCGA-GM-A2DD-01 TCGA-GM-A2DF-01 TCGA-GM-A2DH-01 TCGA-GM-A2DI-01 TCGA-GM-A2DK-01 TCGA-GM-A2DL-01 TCGA-GM-A2DM-01 TCGA-GM-A2DN-01 TCGA-GM-A2DO-01 TCGA-GM-A3NW-01 TCGA-GM-A3NY-01 TCGA-GM-A3XG-01 TCGA-GM-A3XL-01 TCGA-GM-A3XN-01 TCGA-GM-A4E0-01 TCGA-GM-A5PV-01 TCGA-GM-A5PX-01 TCGA-HN-A2NL-01 TCGA-HN-A2OB-01 TCGA-JL-A3YW-01 TCGA-JL-A3YX-01 TCGA-LD-A66U-01 TCGA-LD-A74U-01 TCGA-LD-A7W5-01 TCGA-LD-A7W6-01 TCGA-LD-A9QF-01 TCGA-LL-A440-01 TCGA-LL-A441-01 TCGA-LL-A442-01 TCGA-LL-A50Y-01 TCGA-LL-A5YL-01 TCGA-LL-A5YM-01 TCGA-LL-A5YN-01 TCGA-LL-A5YO-01 TCGA-LL-A5YP-01 TCGA-LL-A6FP-01 TCGA-LL-A6FQ-01 TCGA-LL-A6FR-01 TCGA-LL-A73Y-01 TCGA-LL-A73Z-01 TCGA-LL-A7SZ-01 TCGA-LL-A7T0-01 TCGA-LL-A8F5-01 TCGA-LL-A9Q3-01 TCGA-LQ-A4E4-01 TCGA-MS-A51U-01 TCGA-OK-A5Q2-01 TCGA-OL-A5D6-01 TCGA-OL-A5D7-01 TCGA-OL-A5D8-01 TCGA-OL-A5RV-01 TCGA-OL-A5RW-01 TCGA-OL-A5RX-01 TCGA-OL-A5RY-01 TCGA-OL-A5RZ-01 TCGA-OL-A5S0-01 TCGA-OL-A66H-01 TCGA-OL-A66I-01 TCGA-OL-A66J-01 TCGA-OL-A66K-01 TCGA-OL-A66L-01 TCGA-OL-A66N-01 TCGA-OL-A66O-01 TCGA-OL-A66P-01 TCGA-OL-A6VO-01 TCGA-OL-A6VQ-01 TCGA-OL-A6VR-01 TCGA-OL-A97C-01 TCGA-PE-A5DC-01 TCGA-PE-A5DD-01 TCGA-PE-A5DE-01 TCGA-PL-A8LV-01 TCGA-PL-A8LX-01 TCGA-PL-A8LY-01 TCGA-PL-A8LZ-01 TCGA-S3-A6ZF-01 TCGA-S3-A6ZG-01 TCGA-S3-A6ZH-01 TCGA-S3-AA0Z-01 TCGA-S3-AA10-01 TCGA-S3-AA11-01 TCGA-S3-AA12-01 TCGA-S3-AA14-01 TCGA-S3-AA15-01 TCGA-S3-AA17-01 TCGA-UL-AAZ6-01 TCGA-UU-A93S-01 TCGA-V7-A7HQ-01 TCGA-W8-A86G-01 TCGA-WT-AB41-01 TCGA-WT-AB44-01 TCGA-XX-A899-01 TCGA-XX-A89A-01 TCGA-Z7-A8R5-01 TCGA-Z7-A8R6-01 TCGA-AO-A12B-01
|
| 2 |
+
EUR Admixture % EUR 0.807951 0.10558 0.204756 0.086155 0.962198 0.829941 0.944367 0.904746 0.96671 0.857112 0.937445 0.965314 0.993447 0.307852 1.30E-05 0.884612 0.870037 0.980435 0.976639 0.96639 0.105631 0.992097 0.209036 0.996855 0.987304 0.991065 0.996412 0.833583 0.96807 0.995 0.382875 0.995948 0.845538 0.247216 0.038083 0.999956 0.981317 0.988808 0.982227 0.089585 0.848806 0.998786 0.885237 0.369675 0.994279 0.999954 0.986398 0.07775 0.989493 0.966228 0.907072 0.777061 0.993274 0.972133 0.987514 0.925717 0.99996 0.962417 0.99996 0.97477 0.990452 0.978339 0.939173 0.641355 0.98618 0.992014 0.832282 0.99996 0.914324 0.990853 0.986108 0.206109 0.940749 0.994513 0.99996 0.993773 0.937952 0.994747 0.986724 0.99996 0.993884 0.99127 0.88104 0.954289 0.987839 0.959781 0.980542 0.980146 0.400917 0.973449 0.05654 0.993507 0.979383 0.145606 0.981808 0.206438 0.99466 0.290094 0.13729 0.532589 0.252174 0.259334 0.136127 0.090001 0.113121 0.998154 0.141604 0.993844 0.97111 0.99996 0.928868 0.228257 0.971135 0.984724 0.99996 0.981041 0.992966 0.985632 0.99996 0.998154 0.987349 0.963164 0.984554 0.999514 0.992077 0.914073 0.97878 0.107674 0.987524 0.989258 0.998413 0.156699 0.983196 0.988425 0.99312 0.920768 0.986378 0.993591 0.96727 0.967137 0.982343 0.99537 0.137555 0.175979 0.14474 0.140302 0.513159 0.990333 0.186439 0.217084 0.128345 0.219422 0.991455 0.993528 0.99174 0.989399 0.987881 0.997231 0.998144 0.99996 0.978275 0.99822 0.987635 0.99996 0.983853 0.998751 0.983604 0.99985 0.902635 0.99996 0.997459 0.984429 0.937154 0.995285 0.98931 0.979535 0.982181 0.974194 0.993899 0.996021 0.989128 0.997982 0.891243 0.776124 0.984067 0.991406 0.989554 0.988582 0.996337 0.995535 0.999107 0.994802 0.993448 0.979682 0.627061 0.976836 0.997874 0.984848 0.981607 0.997979 0.997133 0.99774 0.99996 0.99043 0.983952 0.987398 0.985507 0.99996 0.995049 0.996173 0.999956 0.99996 0.991503 0.998567 0.985787 0.980257 0.998815 0.99996 0.888214 0.991692 0.996439 0.999078 0.878056 0.956961 0.990651 0.99996 0.99996 0.989202 0.976009 0.99996 0.969067 0.960025 0.983655 0.894106 0.121728 0.163097 0.99996 0.205132 0.964382 0.642089 0.980169 0.982458 0.996523 0.990938 0.384624 0.076616 0.993903 0.919603 0.99996 0.986149 0.917344 0.99996 0.99996 0.165941 0.99996 0.999431 0.993106 0.99996 0.5353 0.991249 0.961571 0.146695 0.180988 0.120346 0.977791 0.998068 0.104076 0.99996 0.231206 0.238509 0.99996 0.127757 0.254496 0.99449 0.994389 0.870504 0.943391 0.56423 0.971571 0.916184 0.934031 0.942917 0.966124 0.948131 0.934617 0.943155 0.929013 0.942359 0.90821 0.927978 0.936822 0.933403 0.951369 0.944612 0.972638 0.952548 0.929074 0.935782 0.747253 0.976754 0.976996 0.942495 0.837426 0.923211 0.935598 0.969491 0.951371 0.966062 0.950506 0.920747 0.821503 0.835238 0.953843 0.373541 0.99996 0.9553 0.514141 0.129845 0.979557 0.99996 0.99996 0.903427 0.967155 0.994406 0.138645 0.998247 0.99996 0.989937 0.972871 0.998795 0.074031 0.944806 0.960325 0.194217 0.99996 0.939496 0.913391 0.985922 0.998898 0.523908 0.902105 0.125513 0.023737 0.994576 0.989669 0.934065 0.892767 0.957388 0.909993 0.907604 0.874359 0.900481 0.997459 0.984898 0.988496 0.982716 0.975604 0.992532 0.115214 0.132942 0.975231 0.998091 0.896226 0.989315 0.994559 0.519785 0.999844 0.976969 0.991292 0.907558 0.994873 0.997154 0.987485 0.988245 0.986265 0.976154 0.991975 0.991229 0.91337 0.984674 0.997904 0.99996 0.926895 0.99996 0.865429 0.987148 0.977684 0.958301 0.142068 0.930338 0.996385 0.967325 0.989802 0.97629 0.996924 0.997554 0.99996 0.969944 0.981446 0.943339 0.991148 0.999959 0.978032 0.931957 0.976879 0.995205 0.988055 0.852614 0.980995 0.99996 0.940435 0.959959 0.974983 0.883269 0.996064 0.990288 0.996643 0.99034 0.999012 0.995109 0.997966 0.992502 0.981297 0.976948 0.99054 0.9946 0.991983 0.230934 0.949315 0.989299 0.089223 0.999027 0.9996 0.969292 0.99996 0.992551 0.223797 0.970326 0.14406 0.987041 0.146178 0.990828 0.985455 0.983299 0.945151 0.49542 0.997024 0.126369 0.984277 0.089551 0.228942 0.889114 0.966898 0.984309 0.952487 0.991312 0.996673 0.992117 0.967338 0.209587 0.988502 0.982176 0.169031 0.970113 0.246008 0.99996 0.799498 0.957432 0.4145 0.956954 0.957367 0.98556 0.982557 0.894845 0.78186 0.128342 0.373813 0.157315 0.15585 0.902088 0.96491 0.970082 0.221883 0.994197 0.99996 0.929847 0.336494 0.99779 0.98452 0.985523 0.989174 0.968323 0.998834 0.930528 0.963012 0.998671 0.999957 0.972468 0.989024 0.905966 0.875019 0.991633 0.9559 0.989186 0.99542 0.989727 0.994821 0.833548 0.918388 0.961785 0.249444 0.83293 0.899172 0.980332 0.989939 0.968411 0.919367 0.997924 0.14259 0.988729 0.968505 0.986796 0.990173 0.98937 0.997932 0.755495 0.97029 0.989588 0.816295 0.982108 0.994967 0.994048 0.988515 0.107595 0.979832 0.990852 0.98395 0.947454 0.992554 0.96084 0.99996 0.988811 0.937515 0.995792 0.977228 0.967246 0.990566 0.855359 0.97297 0.989549 0.992026 0.908138 0.977661 0.969814 0.987214 0.911622 0.984165 0.991504 0.986484 0.988056 0.019408 0.984685 0.890806 0.894113 0.996422 0.991169 0.993122 0.915352 0.98878 0.953916 0.930598 0.990837 0.998115 0.932094 0.987891 0.977034 0.897868 0.910969 0.986418 0.926672 0.99996 0.994978 0.99996 0.999148 0.934354 0.973821 0.999955 0.969073 0.99996 0.983692 0.993833 0.002823 0.910339 0.996631 0.842457 0.99996 0.99996 0.985254 0.059701 0.99996 0.975814 0.97752 0.983055 0.95886 0.942953 0.973937 0.952439 0.997637 0.964304 0.936723 0.982165 0.942654 0.970523 0.979257 0.176024 0.972362 0.949103 0.976239 0.240853 0.069898 0.121206 0.101685 0.130631 0.99996 0.999825 0.982797 0.939837 0.994962 0.02446 0.039507 0.02707 0.056681 0.02544 0.032655 0.039278 0.055168 0.011594 0.02956 0.024353 0.023384 0.019499 0.025837 0.019871 0.035987 0.036033 0.276185 0.035102 0.027432 0.022264 0.022187 0.007732 0.002547 0.001291 0.018056 0.003935 0.005746 0.02159 0.017914 0.016127 0.026814 0.074085 0.032146 0.010274 0.024214 0.019155 0.052058 0.016665 0.025882 0.022179 0.036578 0.002919 0.021978 0.007651 0.01244 0.024405 0.924278 0.96779 0.870486 0.951399 0.961378 0.978549 0.990713 0.974301 0.949303 0.972636 0.990972 0.985232 0.966383 0.987432 0.985403 0.98733 0.992039 0.956912 0.984976 0.986695 0.97825 0.979935 0.994594 0.981076 0.984046 0.993633 0.992838 0.991822 0.984274 0.981499 0.986775 0.990491 0.99132 0.991956 0.981976 0.995221 0.988882 0.983042 0.978698 0.984468 0.973431 0.906572 0.992728 0.991121 0.978721 0.998845 0.8681 0.986122 0.99087 0.97996 0.984181 0.992829 0.990582 0.993286 0.976254 0.987623 0.775104 0.975053 0.989605 0.944268 0.986186 0.979367 0.968937 0.972351 0.961302 0.977082 0.977119 0.985085 0.985476 0.974231 0.979117 0.993268 0.966755 0.984578 0.985891 0.973887 0.99996 0.991154 0.984926 0.484251 0.846243 0.975313 0.999212 0.985268 0.995218 0.99996 0.804247 0.999952 0.990966 0.969466 0.699642 0.894831 0.249128 0.99996 0.999494 0.994185 0.991476 0.989523 0.974094 0.971254 0.996685 0.99996 0.142484 0.981197 0.988724 0.969788 0.99996 0.810309 0.99714 0.945707 0.992164 0.991688 0.134253 0.926362 0.07706 0.997361 0.977407 0.953514 0.976613 0.985187 0.987555 0.938002 0.997532 0.990324 0.969074 0.99996 0.956916 0.990795 0.968402 0.967345 0.861807 0.970648 0.997171 0.994807 0.890711 0.988594 0.969536 0.105318 0.99996 0.417669 0.088322 0.970371 0.119512 0.984381 0.976772 0.222996 0.209675 0.968019 0.650504 0.65845 0.92768 0.312107 0.115432 0.162487 0.357919 0.162122 0.583784 0.963109 0.95085 0.909626 0.971444 0.938918 0.95294 0.95214 0.93777 0.930603 0.965035 0.909082 0.966456 0.915633 0.913695 0.995809 0.96771 0.979506 0.96351 0.978659 0.964558 0.958416 0.958533 0.968652 0.977281 0.962019 0.932008 0.970997 0.945 0.965959 0.953859 0.97326 0.932565 0.931718 0.97421 0.958123 0.960853 0.96222 0.972952 0.55141 0.982886 0.955879 0.912626 0.911887 0.961583 0.912323 0.881042 0.960716 0.963181 0.964948 0.963975 0.942179 0.958116 0.890765 0.936088 0.895402 0.967454 0.964804 0.932164 0.90441 0.968838 0.90729 0.046829 0.012706 0.463315 0.48975 0.158296 0.894246 0.634403 0.769219 0.906195 0.122546 0.364374 0.897718 0.963368 0.861676 0.871504 0.486086 0.880956 0.788415 0.407054 0.906384 0.915722 0.068663 0.140303 0.79496 0.228666 0.356803 0.879687 0.99996 0.078115 0.06591 0.885442 0.486885 0.825416 0.336839 0.575543 0.779107 0.211993 0.054571 0.063549 0.120868 0.050881 0.981096 0.096963 0.973683 0.998556 0.961813 0.987994 0.835169 0.143997 0.993762 0.990707 0.995272 0.960245 0.699341 0.989708 0.379253 0.98699 0.99996 0.986595 0.180768 0.989503 0.99996 0.990679 0.987972 0.99427 0.978195 0.164611 0.350988 0.969705 0.981367 0.065503 0.996779 0.290664 0.979147 0.129478 0.038114 0.997556 0.986662 0.167644 0.134461 0.087428 0.174652 0.99616 0.030166 0.085553 0.100091 0.19191 0.076185 0.134012 0.048809 0.989999 0.997913 0.942231 0.112542 0.294388 0.25851 0.124331 0.17851 0.063457 0.095033 0.198314 0.188039 0.245704 0.2855 0.147434 0.98703 0.953405 0.184118 0.989819 0.144835 0.147208 0.222332 0.637225 0.215206 0.190496 0.99306 0.24279 0.963165 1.00E-05 1.00E-05 0.006546 0.010272 0.181021 0.259086 0.143331 0.042972 0.090218 0.078319 0.003856 0.09183 0.041361 0.360109 0.094887 0.204227 0.282773 0.993229 0.156201 0.994335 0.965484 0.99996 0.987206 0.988775 0.727011
|
| 3 |
+
AFR Admixture % AFR 0.042551 0.871721 0.795211 0.594399 1.00E-05 0.052823 0.03631 0.016314 0.003134 0.078363 0.005365 1.00E-05 1.00E-05 0.683099 0.00164 0.085813 0.090844 1.00E-05 0.010087 0.02267 0.869291 1.00E-05 0.762197 1.00E-05 0.002969 0.008905 1.00E-05 0.02879 0.02331 1.00E-05 0.594809 1.00E-05 0.108465 0.741884 0.00628 1.00E-05 1.00E-05 1.00E-05 0.011946 0.873664 0.077653 1.00E-05 0.043179 0.531158 1.10E-05 1.00E-05 1.00E-05 0.890882 0.00551 0.016569 0.067222 0.181764 0.006696 0.013688 1.00E-05 1.00E-05 1.00E-05 0.01191 1.00E-05 1.00E-05 1.00E-05 0.012416 0.04372 0.04958 0.000902 1.00E-05 0.126779 1.00E-05 0.062139 1.00E-05 1.00E-05 0.756018 0.0411 1.00E-05 1.00E-05 1.00E-05 0.041455 1.00E-05 0.008613 1.00E-05 1.00E-05 0.00177 0.085745 0.033623 0.002929 0.012797 0.015992 0.009791 0.565543 0.02076 0.926871 0.006463 0.015904 0.843014 0.018162 0.785048 1.00E-05 0.688877 0.853488 0.447285 0.73619 0.728018 0.819982 0.873292 0.876346 1.00E-05 0.845606 1.00E-05 0.006827 1.00E-05 0.050102 0.758798 0.017728 0.003171 1.00E-05 1.00E-05 0.004147 0.000181 1.00E-05 1.00E-05 1.00E-05 0.026091 0.008617 1.00E-05 0.001808 0.066264 0.016789 0.863705 0.007559 0.002501 1.00E-05 0.822692 0.012363 1.00E-05 0.001256 0.062777 0.006211 1.00E-05 0.027948 1.00E-05 0.012803 1.00E-05 0.845069 0.795663 0.81063 0.843496 0.406915 0.009483 0.809148 0.747978 0.853807 0.77448 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005405 1.00E-05 0.004362 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.07535 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004227 0.011279 1.00E-05 0.01197 1.00E-05 0.003384 0.000661 1.00E-05 0.077654 0.001831 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004435 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.349788 0.014119 1.00E-05 1.00E-05 0.007736 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.011476 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006191 0.006598 1.00E-05 1.00E-05 0.077806 1.00E-05 1.00E-05 1.00E-05 0.08902 0.029954 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.011328 1.00E-05 0.007512 0.019952 0.012278 0.076777 0.867535 0.821778 1.00E-05 0.033734 0.024397 0.02624 1.00E-05 2.50E-05 0.002462 0.003896 0.07817 0.914864 1.00E-05 0.063458 1.00E-05 1.00E-05 0.06557 1.00E-05 1.00E-05 0.83047 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.449948 0.008448 0.023379 0.846857 0.813503 0.871448 0.013317 0.001902 0.881824 1.00E-05 0.752203 0.754503 1.00E-05 0.856613 0.723081 1.00E-05 1.00E-05 0.003008 1.00E-05 0.00353 1.00E-05 0.035272 0.000823 0.004074 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006824 1.00E-05 0.020215 1.00E-05 0.011572 1.00E-05 1.00E-05 0.00544 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.021625 0.010996 0.089656 1.00E-05 0.00382 1.00E-05 1.00E-05 0.009336 0.481757 0.851652 1.00E-05 1.00E-05 1.00E-05 0.016918 0.010182 1.00E-05 0.805614 1.00E-05 1.00E-05 0.005535 0.007283 1.00E-05 0.690779 0.00987 0.005064 0.803176 1.00E-05 0.036705 0.017496 1.00E-05 1.00E-05 0.29444 0.016238 0.859364 0.012133 1.00E-05 1.00E-05 0.029296 0.021578 0.029963 0.063513 0.03914 0.041925 0.064877 1.00E-05 0.009383 0.004146 0.013989 0.01917 0.006881 0.860316 0.833337 0.019002 1.00E-05 0.074083 1.00E-05 1.00E-05 0.416959 1.00E-05 0.015468 1.00E-05 0.010509 1.00E-05 1.00E-05 0.004325 1.00E-05 0.011571 0.016055 1.00E-05 0.003935 0.059212 0.007022 1.00E-05 1.00E-05 0.047418 1.00E-05 0.093868 1.00E-05 0.010904 0.028521 0.106726 1.00E-05 1.00E-05 0.021584 1.00E-05 0.00646 1.00E-05 0.002415 1.00E-05 0.022413 0.013026 0.041303 0.005627 1.10E-05 0.014486 0.04855 0.009172 0.002703 0.011915 0.114061 0.00851 1.00E-05 0.041915 0.006536 0.003099 0.08616 0.002462 0.003599 0.00059 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.010785 1.00E-05 0.000674 0.003269 0.760337 0.035356 0.002951 0.890063 1.00E-05 1.00E-05 0.026556 1.00E-05 0.00268 0.751144 0.002869 0.830127 0.007493 0.841279 0.005647 0.012553 0.015274 0.052439 0.48937 1.00E-05 0.844676 0.001044 0.89224 0.74153 0.021503 0.021637 0.011032 0.030883 0.008657 1.00E-05 0.001402 0.022024 0.759888 0.00642 0.00893 0.803205 0.020135 0.738592 1.00E-05 0.147198 0.02994 0.550255 0.034963 0.03269 1.00E-05 0.009691 0.079476 1.00E-05 0.86455 0.590341 0.821546 0.82604 0.067954 0.028991 0.010988 0.749593 1.00E-05 1.00E-05 0.052528 0.649393 0.00218 1.00E-05 1.00E-05 0.008313 0.008637 1.00E-05 0.023638 0.0034 1.00E-05 1.00E-05 0.001184 0.006899 0.052337 0.097293 1.00E-05 0.023089 0.000247 1.00E-05 0.00179 0.002345 0.113246 0.052554 0.030864 0.729384 0.117284 0.017802 0.013239 0.006832 0.018062 0.033884 1.00E-05 0.818088 0.008504 0.007979 0.007236 1.00E-05 1.00E-05 1.00E-05 0.185027 1.00E-05 0.003899 0.130819 1.00E-05 0.00359 1.00E-05 1.00E-05 0.871181 0.012958 1.00E-05 0.003891 0.031545 1.00E-05 0.025526 1.00E-05 1.00E-05 0.006798 1.00E-05 0.004853 0.020558 1.00E-05 0.106628 1.00E-05 0.001856 0.002805 0.022537 0.010736 0.004581 1.00E-05 0.065599 0.002677 0.002249 1.00E-05 1.00E-05 0.010191 1.00E-05 0.031792 0.0756 1.00E-05 0.003967 1.00E-05 0.068561 0.003519 0.006112 0.010348 1.00E-05 1.00E-05 0.022713 1.00E-05 0.013958 0.062718 0.024085 1.00E-05 0.054231 1.00E-05 0.002179 1.00E-05 1.00E-05 0.026761 1.00E-05 1.00E-05 0.015171 1.00E-05 0.000205 1.00E-05 0.008732 0.041863 1.00E-05 0.108322 1.00E-05 1.00E-05 1.00E-05 0.91017 1.00E-05 0.000745 1.00E-05 0.005422 0.02879 0.041772 0.005185 0.018619 1.00E-05 0.001577 0.045542 0.012394 0.011709 1.00E-05 1.00E-05 0.816579 1.00E-05 0.039849 0.001953 0.720826 0.922977 0.859772 0.893427 0.832686 1.00E-05 1.00E-05 1.00E-05 0.031984 1.00E-05 0.01731 0.04818 0.019614 0.081452 0.016173 0.013279 0.069319 0.06884 1.00E-05 0.020456 0.009284 0.004395 0.036106 0.010933 0.019326 0.023938 0.042098 0.012346 0.014552 0.011623 0.014402 0.007772 1.00E-05 1.00E-05 1.00E-05 0.005476 1.00E-05 1.00E-05 0.016292 0.011353 1.00E-05 0.013332 0.141247 0.027155 0.007645 0.038699 0.012056 0.112779 0.011989 0.009293 0.01113 0.01026 1.00E-05 0.010491 1.00E-05 1.00E-05 0.014182 0.011452 0.026683 0.092391 0.037022 0.02657 0.00617 1.00E-05 0.00515 0.031361 0.007861 1.00E-05 1.00E-05 0.011106 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.029758 0.004174 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.007841 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006224 0.008643 1.00E-05 1.00E-05 0.066943 1.00E-05 1.00E-05 0.010481 1.00E-05 0.090568 1.00E-05 1.00E-05 0.004298 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003498 1.00E-05 0.184543 0.012468 1.00E-05 0.039334 0.008417 0.011885 0.011584 0.001395 0.031052 0.012547 0.009106 1.00E-05 0.008054 0.013628 0.009041 1.00E-05 0.00014 1.00E-05 1.00E-05 0.022467 1.00E-05 1.00E-05 1.00E-05 0.175733 0.119096 0.019862 1.00E-05 1.00E-05 0.003498 1.00E-05 0.140413 1.00E-05 1.00E-05 0.022825 0.243735 0.008201 0.739183 1.00E-05 1.00E-05 0.000528 0.000452 1.00E-05 0.020034 1.00E-05 1.00E-05 1.00E-05 1.80E-05 1.00E-05 0.00674 0.024378 1.00E-05 0.147504 0.002826 0.034574 1.00E-05 1.00E-05 0.847277 0.011957 0.88814 0.001038 0.007612 0.042335 0.020676 1.00E-05 1.00E-05 0.04297 1.00E-05 1.00E-05 0.023501 1.00E-05 0.016388 0.0056 0.00185 0.008039 0.084257 0.006031 1.00E-05 0.002587 1.00E-05 1.00E-05 1.00E-05 0.879619 1.00E-05 0.073844 0.894673 0.004023 0.875396 0.002336 1.00E-05 0.765892 0.751876 0.003235 0.259081 0.025029 0.022834 0.673245 0.868498 0.808325 0.622322 0.803906 0.405543 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.007883 1.00E-05 0.007458 1.00E-05 1.00E-05 0.043829 1.00E-05 0.034474 0.041586 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.010022 0.003691 1.00E-05 1.00E-05 0.008238 0.042591 1.00E-05 1.00E-05 1.00E-05 0.009496 1.00E-05 0.000722 0.018819 1.00E-05 1.00E-05 1.00E-05 0.002903 1.00E-05 0.001592 0.000622 1.00E-05 0.052492 0.062226 0.00263 0.051587 0.081256 1.00E-05 0.005416 0.005432 1.00E-05 1.00E-05 1.00E-05 0.016628 0.016346 0.063469 1.00E-05 0.006453 0.000116 0.030074 1.00E-05 0.075813 0.045494 1.00E-05 0.261801 0.15773 0.031957 0.034896 0.121359 0.141711 0.073493 0.833794 0.5559 0.017979 0.025818 0.072329 0.085642 0.039326 0.023904 0.154533 0.081981 0.009204 0.041238 0.899799 0.859667 0.156235 0.222303 0.270416 0.088379 1.00E-05 1.00E-05 0.914123 0.065443 0.192198 0.068979 0.625689 0.123465 0.089833 0.736699 0.945399 0.917365 0.867014 0.815334 0.005512 0.879729 0.019686 1.00E-05 0.020693 0.006569 0.150513 0.818357 0.006208 1.00E-05 1.00E-05 0.026887 0.034662 1.00E-05 0.613007 1.00E-05 1.00E-05 0.00868 0.78615 0.003893 1.00E-05 0.002492 0.008314 0.001657 1.00E-05 0.000305 0.020027 0.005523 0.015966 0.909193 0.003191 0.695347 0.014769 0.858114 0.955012 0.002414 0.009768 0.828673 0.862507 0.903163 0.8 0.00381 0.954721 0.909995 0.889944 0.785981 0.915696 0.82001 0.93374 0.004136 1.00E-05 0.03383 0.854751 0.693848 0.714326 0.865886 0.793463 0.923963 0.877115 0.790471 0.802001 0.742464 0.672671 0.807066 0.006155 0.024819 0.782146 0.002114 0.841325 0.834166 0.737024 0.027747 0.77232 0.79403 1.00E-05 0.005488 0.028169 0.99996 0.99996 0.993424 0.989698 0.806751 0.729022 0.815022 0.943804 0.903163 0.899857 0.996106 0.869834 0.946242 0.592729 0.877336 0.785217 0.713669 1.00E-05 0.795012 1.00E-05 0.017359 1.00E-05 0.000587 1.00E-05 0.131644
|
| 4 |
+
EAS Admixture % EAS 0.002436 0.018699 1.00E-05 0.02148 0.027323 1.00E-05 0.016338 0.009912 0.004794 0.030903 0.004492 0.024371 0.001325 0.001754 0.980263 0.016087 0.038345 1.00E-05 1.00E-05 0.003749 0.010971 0.003794 0.020509 1.00E-05 0.002167 1.00E-05 1.00E-05 0.001915 0.005832 1.00E-05 0.012376 0.003622 0.028804 0.01088 0.906788 1.00E-05 1.00E-05 0.000665 0.005551 0.0073 0.028638 1.00E-05 0.020853 0.004602 1.00E-05 1.00E-05 1.00E-05 0.012833 0.00303 0.009114 0.023752 0.003659 1.00E-05 0.012602 0.004184 0.05351 1.00E-05 0.005163 1.00E-05 0.002587 1.00E-05 0.003878 0.015859 0.02374 1.00E-05 1.00E-05 0.036096 1.00E-05 0.015827 1.00E-05 1.00E-05 0.027716 0.013021 0.001844 1.00E-05 1.40E-05 0.016055 1.60E-05 0.0016 1.00E-05 0.005703 1.00E-05 0.025993 0.008675 0.005352 0.018541 1.00E-05 0.005929 0.013613 0.005371 0.015749 1.00E-05 0.000217 0.011359 1.00E-05 0.002821 0.003642 0.006869 0.009202 0.020106 0.011145 0.0113 0.032322 0.020508 0.006206 1.00E-05 0.01277 1.00E-05 1.00E-05 1.00E-05 0.015241 0.012926 0.006904 0.002066 1.00E-05 0.01765 0.002868 1.00E-05 1.00E-05 1.00E-05 0.004128 0.007534 0.001799 0.000454 1.00E-05 0.018238 0.00441 0.023139 0.004897 0.006375 0.001464 0.00938 0.001327 1.00E-05 0.000257 0.008953 1.00E-05 0.006379 0.002285 0.019704 0.004834 0.0046 0.005448 0.008684 0.031917 0.011911 0.023108 0.000164 0.004393 0.011666 0.014033 0.006078 1.00E-05 0.004587 1.00E-05 1.00E-05 0.005845 1.00E-05 1.00E-05 1.00E-05 0.009075 1.00E-05 0.004293 1.00E-05 0.004845 1.00E-05 0.001799 0.00012 0.007215 1.00E-05 1.00E-05 1.00E-05 0.043183 0.004685 1.00E-05 0.006337 0.007037 0.008334 0.000293 0.000575 1.00E-05 1.00E-05 0.012552 0.052717 0.002534 0.00062 0.001023 0.003889 1.00E-05 1.00E-05 1.00E-05 0.001214 0.001419 1.00E-05 0.000479 0.004805 0.000231 1.00E-05 0.003119 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002083 0.000915 2.00E-05 0.00221 1.00E-05 0.004921 1.00E-05 1.00E-05 1.00E-05 0.003378 1.00E-05 1.00E-05 1.00E-05 0.001155 1.00E-05 0.026464 0.001905 0.002448 0.000892 0.026517 0.009897 0.005469 1.00E-05 1.00E-05 1.00E-05 0.011589 1.00E-05 0.014686 0.01803 0.002907 0.023558 0.002378 0.007227 1.00E-05 0.021035 0.008459 0.011087 1.00E-05 1.00E-05 0.000994 0.000313 0.044394 0.0085 1.00E-05 0.001228 1.00E-05 0.013821 0.005285 1.00E-05 1.00E-05 0.003569 1.00E-05 1.00E-05 0.006864 1.00E-05 0.010798 0.000283 0.014275 0.004523 1.00E-05 0.00587 0.008781 1.00E-05 0.01408 1.00E-05 0.010166 0.002762 1.00E-05 0.01504 0.015868 1.00E-05 0.002862 0.035038 0.021473 0.208274 0.007296 0.037495 0.047373 0.041509 0.032693 0.028617 0.028705 0.030296 0.031096 0.025875 0.040478 0.053035 0.027499 0.036032 0.021824 0.046488 0.011183 0.029885 0.041438 0.037015 0.141885 0.003689 0.019286 0.032257 0.100902 0.044162 0.047687 0.012477 0.040737 0.01738 0.018936 0.04703 0.068725 0.114143 0.032454 1.00E-05 1.00E-05 0.000727 1.00E-05 0.0143 1.00E-05 1.00E-05 1.00E-05 0.009697 1.00E-05 1.00E-05 0.005476 0.001723 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003961 1.00E-05 0.014017 1.00E-05 1.00E-05 0.016678 0.000764 1.00E-05 1.00E-05 1.00E-05 0.015296 0.00313 0.937227 0.000709 1.00E-05 0.00617 0.011525 0.00569 0.022718 0.007925 0.02075 0.032033 0.001832 0.005699 0.005311 0.003275 0.004779 1.00E-05 0.011332 0.022033 0.00449 0.001482 0.020546 0.001486 0.003078 0.030318 1.00E-05 0.005139 1.00E-05 0.060483 1.00E-05 1.00E-05 0.00051 0.005169 1.00E-05 0.006949 1.00E-05 0.002657 0.02678 0.008284 1.00E-05 1.00E-05 0.019288 1.00E-05 0.033992 0.004325 0.010846 0.006926 0.068411 0.049874 1.00E-05 0.001794 0.003712 0.012999 0.003046 1.00E-05 1.00E-05 0.005671 0.005508 0.01499 0.000673 1.00E-05 0.007462 0.013273 0.00359 0.000134 1.00E-05 0.023861 0.010473 1.00E-05 0.009026 0.005777 0.012283 0.024309 0.001453 1.00E-05 1.00E-05 0.004021 0.000958 0.002271 0.002004 0.000921 0.009459 0.010953 0.005876 1.00E-05 0.003857 0.003672 1.00E-05 0.001649 0.015772 1.00E-05 1.00E-05 0.00411 1.00E-05 1.00E-05 0.013096 0.004828 0.013797 0.004769 0.012523 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004235 1.20E-05 0.023053 0.002747 0.004316 0.018781 0.012288 0.008167 1.00E-05 0.011643 1.10E-05 0.001245 1.00E-05 0.007087 0.030505 1.00E-05 0.004107 0.026801 0.006405 0.007907 1.00E-05 0.03756 0.010491 0.015116 0.00612 1.00E-05 1.00E-05 0.007732 0.016013 0.014316 0.007088 0.027429 0.020193 0.01809 0.026372 0.004552 0.016556 0.024024 1.00E-05 1.00E-05 0.017606 0.010953 1.00E-05 0.00297 1.00E-05 1.00E-05 0.000435 1.00E-05 0.016493 0.001857 1.00E-05 1.30E-05 0.005344 1.00E-05 0.03352 0.026437 0.003717 0.018557 0.003043 1.00E-05 0.004908 0.002814 0.046572 0.024498 0.005788 0.008591 0.040224 1.00E-05 1.00E-05 1.00E-05 0.013507 0.001026 1.00E-05 0.027684 0.002171 0.010714 0.005634 0.006374 1.00E-05 1.00E-05 0.047201 0.017743 0.002186 0.046509 0.010508 1.00E-05 0.003355 1.00E-05 0.00898 0.001295 0.005004 0.01187 0.014977 1.00E-05 0.009565 1.00E-05 0.002167 1.00E-05 1.00E-05 0.012789 0.009701 1.00E-05 0.037643 0.009351 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.010531 0.005312 0.015423 1.00E-05 0.002257 1.00E-05 1.00E-05 0.957237 1.00E-05 0.016923 0.023361 1.00E-05 1.00E-05 1.00E-05 0.013909 0.006288 0.011125 1.00E-05 0.006839 1.00E-05 0.002026 0.001047 0.005229 0.030309 1.00E-05 1.00E-05 0.015809 1.00E-05 0.002823 1.00E-05 1.00E-05 1.40E-05 0.010847 1.50E-05 0.003545 1.00E-05 1.00E-05 0.006137 0.988425 0.004551 0.003339 0.034202 1.00E-05 1.00E-05 0.006218 0.014393 1.00E-05 0.007807 0.012538 0.002633 0.007546 0.009219 1.00E-05 0.004033 0.002333 1.00E-05 0.01361 0.005117 1.00E-05 0.009927 0.005223 0.006713 0.001749 0.008584 0.00219 0.024491 0.007105 0.018427 0.004868 0.032806 1.00E-05 0.000142 0.014632 0.010856 0.002263 0.95821 0.912293 0.953296 0.861846 0.957217 0.954046 0.891382 0.875973 0.970903 0.949964 0.958959 0.960943 0.944374 0.957026 0.960783 0.940055 0.921849 0.021073 0.949746 0.959008 0.956949 0.964218 0.992238 0.977951 0.969821 0.976448 0.968805 0.973142 0.962098 0.963022 0.970953 0.959834 0.784648 0.940679 0.960787 0.937066 0.968769 0.835143 0.95713 0.957207 0.947502 0.952928 0.978647 0.960048 0.979428 0.97825 0.960085 0.023446 0.002561 0.032166 0.011559 0.012032 0.008823 0.009099 0.017311 0.014048 0.014291 0.004408 0.004339 0.008115 0.00226 0.004591 0.008054 0.00294 0.008915 0.008411 0.00799 0.015272 0.00832 0.004451 0.005996 0.005229 0.002922 0.007132 0.003351 1.00E-05 0.004902 0.008944 0.004503 0.004393 0.008014 0.012476 0.002385 0.002376 0.008509 0.007975 0.012818 0.00654 0.014396 0.003883 0.004608 0.010157 1.00E-05 0.020749 0.006982 0.0091 0.005712 0.010119 0.007141 0.004813 0.00631 0.014979 0.006116 0.031959 0.012459 0.010365 0.013444 0.003724 0.008728 0.019459 0.007572 0.007627 0.004102 0.013755 0.013979 0.003673 0.010845 0.00685 0.006702 0.014194 0.012916 0.007007 1.00E-05 1.00E-05 1.00E-05 1.30E-05 0.052531 0.030065 0.004308 1.00E-05 0.002611 1.00E-05 1.00E-05 0.041304 1.00E-05 0.001374 0.005865 0.017252 0.001272 0.011669 1.00E-05 0.000475 0.00495 0.001888 1.00E-05 0.005506 0.002855 1.00E-05 1.00E-05 0.095676 0.001568 0.003951 0.005814 1.00E-05 0.022241 1.40E-05 0.011051 0.003002 1.00E-05 0.018451 1.00E-05 0.014802 1.00E-05 0.012223 0.002426 1.00E-05 0.006296 0.003095 0.009336 1.00E-05 1.00E-05 0.004568 1.00E-05 1.00E-05 1.00E-05 0.002574 0.008082 0.028844 1.00E-05 0.002799 1.00E-05 0.012447 0.004721 0.003233 0.013885 1.00E-05 0.085493 0.011263 0.002332 0.002577 1.00E-05 0.01601 0.007533 0.038395 1.00E-05 0.018748 0.005021 1.00E-05 0.001131 0.01359 0.022122 0.018222 0.017881 1.00E-05 0.030449 0.024865 0.061169 0.00896 0.04776 0.015535 0.017485 0.031599 0.037888 0.027572 0.038684 0.021612 0.041972 0.041064 1.00E-05 0.004469 0.014514 0.025178 0.010529 0.029117 0.025131 0.019174 0.021062 0.016146 0.018706 0.016978 0.020943 0.038413 0.022325 0.018805 0.005391 0.046382 0.0367 0.014016 0.031405 0.02168 0.027827 0.023393 0.153358 0.012783 0.03352 0.021843 0.019357 0.023563 0.030095 0.028418 0.031142 0.01951 0.013599 0.029372 0.038057 0.025617 0.079016 0.039181 0.030048 0.021294 0.022281 0.048075 0.048686 1.00E-05 0.012106 0.878106 0.984597 0.014397 1.00E-05 0.050572 0.008288 0.052545 0.007068 0.009208 0.041857 0.00499 0.004143 0.00892 0.004891 0.025458 1.00E-05 0.022244 0.037769 0.025023 0.010964 0.001958 0.018657 1.00E-05 0.021153 0.009121 0.05257 0.008975 1.00E-05 0.04469 0.008825 0.008935 0.045661 0.016425 0.028539 0.005368 0.018322 0.040043 1.00E-05 0.006125 0.004818 0.014396 0.002295 0.018667 0.005658 0.001414 0.009067 0.000182 0.006581 0.024089 1.00E-05 1.00E-05 1.00E-05 0.009793 0.014528 1.00E-05 0.006548 0.002525 1.00E-05 0.004607 0.009315 0.001824 1.00E-05 0.005904 0.001819 1.00E-05 0.006539 0.021862 0.038924 0.013866 0.002647 0.023048 1.00E-05 0.011139 0.00578 0.006661 0.005068 1.00E-05 1.00E-05 0.003156 1.00E-05 0.004298 0.021883 1.00E-05 0.007283 0.002727 0.008697 0.017053 0.005802 0.03059 0.013341 0.002524 0.002057 0.019955 0.029431 0.011744 0.015778 0.003893 0.024712 0.012559 0.025172 0.008351 0.00994 0.011812 0.031578 0.03897 0.006796 0.016752 0.022557 0.001034 0.011857 0.009945 0.039207 0.009546 0.012453 0.006825 1.00E-05 0.64562 0.007379 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.012208 0.007072 0.029967 0.001118 1.50E-05 0.009731 1.00E-05 0.022376 0.008842 0.036799 0.023025 0.010536 0.003538 1.00E-05 0.01408 1.00E-05 0.016099 1.00E-05 1.00E-05 1.00E-05 0.00368
|
| 5 |
+
AMR Admixture % AMR 1.00E-05 0.00399 1.40E-05 0.124076 0.010459 0.115459 0.002975 0.000136 0.009315 1.00E-05 1.00E-05 0.006753 0.002416 0.007285 0.018074 0.013478 0.000763 0.006574 0.013254 1.00E-05 0.014096 1.00E-05 0.008249 0.003115 1.00E-05 1.00E-05 0.003558 0.130798 0.002778 0.002307 0.005359 0.000409 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.01122 0.010508 0.000266 0.029441 7.30E-05 0.001184 0.005339 0.093069 1.00E-05 1.00E-05 0.004122 0.018525 1.00E-05 0.00808 0.001945 1.00E-05 1.00E-05 0.001567 0.003412 0.014491 1.00E-05 1.00E-05 1.00E-05 0.000236 1.00E-05 0.005356 0.001237 0.284268 0.00107 1.00E-05 0.004832 1.00E-05 0.0077 0.002947 1.00E-05 0.010147 0.005121 1.00E-05 1.00E-05 0.006193 0.004527 1.00E-05 1.00E-05 1.00E-05 0.000394 0.002203 0.007212 0.003403 0.00387 0.004591 0.003446 0.003094 0.019918 0.000409 0.00083 1.00E-05 0.004486 1.10E-05 1.00E-05 1.00E-05 1.00E-05 0.01415 1.00E-05 1.00E-05 0.000481 0.000948 0.01156 0.016189 0.004318 0.001816 1.00E-05 0.001594 1.00E-05 1.00E-05 0.005779 1.00E-05 0.004223 0.00938 1.00E-05 1.00E-05 1.00E-05 0.004267 1.00E-05 0.001816 0.004465 0.003202 0.00502 1.20E-05 0.002485 0.001415 1.00E-05 0.005472 1.00E-05 0.001856 0.000103 0.01122 0.001137 0.002209 0.005357 0.007493 1.00E-05 1.00E-05 0.002487 1.00E-05 1.00E-05 1.00E-05 0.011919 0.019664 0.012703 0.004281 0.056808 1.00E-05 1.00E-05 0.023262 0.003805 1.00E-05 1.00E-05 1.00E-05 0.00198 0.002355 0.00588 1.00E-05 0.001819 1.00E-05 3.10E-05 0.00175 0.0037 1.00E-05 0.000392 1.00E-05 0.00215 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.010062 1.00E-05 0.001104 0.002838 0.002645 0.005492 0.004259 1.00E-05 1.00E-05 1.00E-05 0.018541 1.00E-05 1.00E-05 0.002747 0.005704 0.007509 0.003633 1.00E-05 0.000863 0.003964 1.00E-05 0.007582 1.00E-05 0.00423 1.00E-05 0.004331 1.00E-05 0.00135 0.001484 1.00E-05 1.00E-05 1.00E-05 0.003647 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003527 1.20E-05 1.00E-05 0.000288 1.00E-05 0.008003 0.002108 1.00E-05 1.00E-05 0.007506 1.00E-05 1.00E-05 1.00E-05 0.006397 0.003178 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001064 1.00E-05 1.00E-05 0.001984 0.00115 0.005549 0.008349 0.007888 1.00E-05 1.00E-05 0.002752 0.293254 0.012026 0.008877 1.00E-05 0.004843 0.492801 1.00E-05 0.004282 0.015701 1.00E-05 1.00E-05 0.011791 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000539 1.00E-05 1.00E-05 0.003945 1.00E-05 0.000765 0.001915 0.005489 0.002326 0.000101 1.00E-05 1.00E-05 1.00E-05 0.006415 0.004216 1.00E-05 0.00058 0.006544 1.00E-05 1.00E-05 0.019003 0.012152 0.020588 0.018626 0.011039 0.014483 0.01149 0.001164 0.012274 0.017093 0.011593 0.019384 0.01024 0.0208 0.018968 0.007398 0.018208 0.012722 0.006462 0.009951 0.011448 0.015147 0.018119 0.042597 0.005746 0.003698 0.010855 0.035311 0.028851 0.009469 0.006236 0.007871 0.010938 0.008923 0.009995 0.020106 0.036356 0.009873 0.006632 1.00E-05 0.001834 0.001139 0.004193 0.003499 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.050254 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.007321 1.00E-05 0.007875 1.00E-05 1.00E-05 0.007111 1.00E-05 1.00E-05 0.001072 0.181632 0.000358 0.011984 1.00E-05 1.00E-05 1.20E-05 1.00E-05 0.001114 0.006949 0.003767 1.00E-05 1.00E-05 0.002599 0.000689 1.00E-05 1.00E-05 1.00E-05 0.000438 0.000567 0.013128 0.011678 0.001267 1.00E-05 0.009135 0.009179 0.002343 0.032927 0.000126 0.002415 1.00E-05 0.02144 1.00E-05 1.00E-05 0.002699 0.006566 0.002144 0.000832 1.00E-05 0.002169 0.000629 1.00E-05 0.002066 1.00E-05 0.00639 1.00E-05 0.006702 0.002623 0.000556 0.006242 1.00E-05 0.019768 0.003585 0.009287 1.00E-05 0.004241 1.00E-05 1.10E-05 1.00E-05 0.001962 1.00E-05 0.000358 0.002542 1.00E-05 1.00E-05 0.00621 0.010349 1.00E-05 1.00E-05 0.009453 1.10E-05 1.00E-05 0.008614 0.008183 0.004144 0.006251 1.00E-05 1.00E-05 1.00E-05 0.005618 1.00E-05 0.0026 1.00E-05 0.000752 0.002384 0.001304 0.001169 0.00241 1.00E-05 0.005047 0.007154 0.005542 0.004931 0.000943 1.00E-05 3.20E-05 1.00E-05 1.00E-05 0.001427 0.013182 0.012006 1.00E-05 1.00E-05 1.00E-05 0.001972 0.000367 0.00239 0.010965 1.00E-05 1.00E-05 0.004191 0.001289 0.010737 0.00028 0.000965 0.004639 0.004977 1.00E-05 1.00E-05 1.00E-05 0.003541 1.00E-05 1.00E-05 0.004777 0.000953 0.003338 0.007483 1.00E-05 0.015734 0.002126 0.020118 0.001953 0.004504 0.004695 1.00E-05 0.009656 0.203804 1.00E-05 0.008407 0.000936 1.00E-05 0.003577 0.001537 0.002363 0.00449 1.00E-05 1.00E-05 1.00E-05 0.003151 1.00E-05 1.00E-05 0.002746 0.002493 0.005452 0.001136 0.000888 0.001311 1.00E-05 1.00E-05 1.00E-05 0.004057 0.008167 0.00124 1.00E-05 0.000707 1.00E-05 1.00E-05 0.003565 1.00E-05 0.003462 0.00455 0.001552 0.01257 0.009553 1.00E-05 0.002598 0.001217 1.00E-05 0.003245 0.002046 0.011627 0.000586 0.004928 0.000323 0.003432 1.00E-05 1.00E-05 0.012267 1.00E-05 0.000819 0.006367 0.000579 0.001423 0.002577 0.011455 0.009771 0.005904 0.003657 0.000279 0.006015 0.000417 0.004059 1.00E-05 0.003904 0.000204 1.00E-05 0.002949 0.002485 0.005242 0.00036 0.003119 0.004192 1.00E-05 1.00E-05 0.003112 0.0025 1.00E-05 0.007345 1.00E-05 1.00E-05 0.002888 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006916 0.003547 0.001046 0.000147 0.002168 0.001403 0.028285 1.00E-05 0.002304 0.001846 1.00E-05 0.001368 0.003169 0.009095 1.00E-05 5.70E-05 0.003278 1.00E-05 1.00E-05 1.00E-05 0.000822 1.00E-05 1.00E-05 1.00E-05 0.001108 1.00E-05 0.002985 1.00E-05 1.00E-05 0.000788 1.00E-05 0.01501 1.00E-05 1.00E-05 1.00E-05 0.015726 1.00E-05 0.002022 1.00E-05 0.0034 0.004794 0.006046 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004114 0.000315 1.00E-05 0.00362 0.005868 0.000674 0.000302 0.002453 0.00034 0.01382 1.00E-05 0.000585 1.00E-05 0.003867 1.00E-05 1.00E-05 0.00255 1.00E-05 0.002755 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.10E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004176 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000204 0.002956 0.004947 1.00E-05 1.00E-05 0.003684 0.000168 0.003228 0.005279 0.005201 0.001223 0.00602 1.00E-05 0.003358 0.003308 0.00459 0.003093 0.004405 0.002429 0.004657 0.006458 0.007791 0.000936 0.005077 1.00E-05 0.00273 1.00E-05 0.004807 0.002656 0.000454 0.004261 1.00E-05 0.000658 1.00E-05 0.001892 0.002373 0.003661 0.002215 0.004674 0.002694 0.008985 0.012078 0.003368 0.00405 0.000631 0.001125 0.020573 0.003117 1.00E-05 0.010021 0.003445 1.00E-05 0.002338 1.00E-05 0.005259 1.00E-05 0.008384 1.00E-05 1.00E-05 0.002945 1.00E-05 1.00E-05 1.00E-05 0.008839 1.00E-05 0.006259 1.00E-05 0.000916 0.002788 0.001286 0.004982 1.00E-05 0.003778 0.002487 0.007083 0.003626 1.00E-05 1.00E-05 1.00E-05 0.287475 0.004587 0.000507 1.00E-05 1.00E-05 0.001263 1.00E-05 0.004516 1.00E-05 0.001206 0.001834 0.039361 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000327 0.002008 0.00706 0.000355 0.010319 0.003285 1.00E-05 0.761811 0.006175 0.000575 1.00E-05 1.00E-05 0.003765 1.00E-05 0.008657 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.019988 1.00E-05 0.00167 0.001715 0.002691 0.000863 0.004424 0.009682 0.002438 1.00E-05 0.002848 1.00E-05 1.00E-05 0.003584 0.000832 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00258 0.096822 0.005958 0.002625 0.001167 1.00E-05 0.422984 0.005732 1.00E-05 0.002505 0.002536 1.00E-05 0.003569 4.30E-05 1.00E-05 0.071657 0.31149 1.00E-05 0.013507 0.002469 0.007056 0.001527 0.016081 1.00E-05 0.002791 0.014455 0.013456 0.009495 0.012365 0.011556 0.016099 0.007044 0.020216 0.004146 0.008395 0.003787 0.00791 0.003645 0.004161 1.20E-05 0.005959 0.001891 0.005676 0.00202 0.00352 0.010018 0.004981 0.005826 1.00E-05 0.008412 0.00804 0.016567 1.00E-05 0.006696 0.003767 0.007956 0.008663 0.011753 0.008091 0.014137 0.006882 0.003635 0.03409 0.003278 0.010581 0.013029 0.00652 0.012214 0.005985 0.009274 0.008122 0.011883 0.012382 0.000457 0.011186 0.007699 0.013581 0.004208 0.011071 0.007678 0.006452 0.013838 0.016819 1.00E-05 0.004781 0.029561 0.002677 0.259981 0.347362 1.00E-05 0.056048 0.006938 0.07518 0.011095 0.001793 0.074725 1.00E-05 0.001884 0.061095 1.00E-05 0.468186 1.00E-05 0.019273 0.485933 0.001603 0.028102 0.012871 1.00E-05 0.027643 0.539901 0.320201 0.013685 1.00E-05 1.10E-05 0.011131 0.04017 0.275246 0.08917 0.008924 0.295614 0.112729 0.011256 1.00E-05 0.012951 0.007291 0.119379 0.011087 1.00E-05 0.000963 1.00E-05 0.008418 0.005245 0.003999 0.013548 1.00E-05 0.009263 0.001642 0.003066 0.242608 1.00E-05 0.001182 0.004742 1.00E-05 0.000108 0.023758 0.00061 1.00E-05 0.000915 0.001885 1.00E-05 1.70E-05 1.00E-05 0.004425 0.00889 1.00E-05 0.002246 1.00E-05 0.002839 0.000293 0.005737 0.001796 1.00E-05 0.00355 0.000517 0.003012 0.005102 0.003454 1.00E-05 0.007819 0.001715 0.001258 0.005046 0.002307 0.015378 0.0041 0.00333 1.00E-05 0.003974 0.003266 1.00E-05 0.011375 0.00588 0.003305 1.00E-05 0.00267 0.002853 1.00E-05 1.00E-05 0.010242 0.00652 1.00E-05 0.005014 0.011168 0.007023 0.001973 0.008671 0.001427 0.298702 1.00E-05 0.008166 1.00E-05 0.074503 0.001277 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.01167 0.012095 0.006594 0.009811 1.00E-05 0.015381 0.003545 0.010352 0.001611 1.00E-05 1.00E-05 0.006741 0.034697 0.005635 0.001048 1.00E-05 0.001257 0.002497 0.134407
|
| 6 |
+
SAS Admixture % SAS 0.147052 1.00E-05 1.00E-05 0.17389 1.00E-05 0.001767 1.00E-05 0.068892 0.016046 0.033612 0.052689 0.003552 0.002802 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.01297 1.00E-05 0.007181 1.00E-05 0.00409 1.00E-05 1.00E-05 0.00755 1.00E-05 1.00E-05 0.004914 1.00E-05 0.002673 0.004581 1.00E-05 0.017183 1.00E-05 0.048839 1.40E-05 0.007444 1.00E-05 1.00E-05 1.00E-05 0.04483 1.00E-05 0.045392 0.001496 0.005691 1.60E-05 0.00946 1.00E-05 0.001956 1.00E-05 1.00E-05 0.037506 1.00E-05 1.00E-05 0.00488 0.006273 1.00E-05 0.020499 1.00E-05 0.022397 0.009518 1.00E-05 1.00E-05 0.001057 0.011839 0.007956 1.00E-05 1.00E-05 1.00E-05 0.00618 0.013862 1.00E-05 1.00E-05 0.003623 1.00E-05 1.00E-05 1.00E-05 0.005218 0.003053 1.00E-05 1.00E-05 0.004746 1.00E-05 1.00E-05 1.00E-05 0.00429 1.00E-05 0.001039 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005684 0.001677 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.0004 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004542 0.022043 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000659 1.00E-05 0.001288 1.00E-05 0.009909 1.00E-05 1.00E-05 0.004048 1.00E-05 1.00E-05 1.00E-05 0.00362 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001977 0.009346 1.00E-05 1.00E-05 0.007391 1.00E-05 1.00E-05 0.013139 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.008515 0.001865 0.00626 0.008226 0.000383 0.002739 1.70E-05 1.00E-05 0.007214 1.00E-05 1.00E-05 1.00E-05 0.0109 0.001219 0.012437 1.00E-05 0.01479 1.00E-05 0.002511 0.015541 0.009591 1.00E-05 0.005349 1.00E-05 0.008127 1.00E-05 0.001539 1.00E-05 0.010191 0.001988 1.00E-05 0.169319 0.013379 0.005217 0.003709 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005113 0.012716 0.022662 1.00E-05 0.001875 0.010801 0.007529 0.000651 0.001363 0.00223 1.00E-05 0.007468 1.00E-05 0.012562 0.012263 1.00E-05 1.00E-05 0.00028 1.30E-05 1.00E-05 0.004821 0.001403 1.00E-05 0.011027 1.00E-05 1.00E-05 1.00E-05 0.006383 0.001094 1.00E-05 1.00E-05 1.00E-05 0.00386 1.00E-05 1.00E-05 0.010768 1.00E-05 1.00E-05 0.008725 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.740089 1.00E-05 0.02733 0.007784 0.00863 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001795 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00548 0.00273 0.072447 0.022974 0.203379 0.002497 1.00E-05 0.00329 1.00E-05 1.00E-05 0.010968 0.019575 0.014946 0.020497 0.021515 0.023688 1.00E-05 0.008065 0.012347 0.002513 0.002428 0.006218 0.000681 0.014331 0.009074 0.068256 0.013801 1.00E-05 0.014383 0.026351 0.003766 0.007236 0.011787 1.00E-05 0.005609 1.00E-05 0.011232 1.00E-05 0.014253 1.00E-05 0.619807 1.00E-05 0.032804 0.002953 1.00E-05 0.016923 1.00E-05 1.00E-05 0.069948 0.022643 0.005564 1.00E-05 1.00E-05 1.00E-05 0.004508 0.019826 0.001175 0.223908 0.045304 0.012719 0.002586 1.00E-05 1.00E-05 0.068339 0.014048 1.00E-05 1.00E-05 0.066003 1.00E-05 0.026893 0.004695 0.010299 0.030459 0.073016 1.00E-05 1.00E-05 0.045321 0.062956 1.00E-05 1.00E-05 1.00E-05 0.002037 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000407 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.008678 1.00E-05 0.005097 0.002816 0.004982 1.00E-05 1.00E-05 1.00E-05 0.007995 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005894 1.00E-05 1.00E-05 0.682785 1.00E-05 1.00E-05 1.00E-05 0.006466 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001948 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.019545 0.00549 1.00E-05 1.00E-05 0.006093 0.002747 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005815 0.00685 1.00E-05 0.002404 0.002305 0.000881 1.00E-05 0.008166 0.00056 1.00E-05 1.00E-05 0.00037 1.00E-05 1.00E-05 0.004748 0.010536 0.008795 1.00E-05 0.000687 1.00E-05 0.003504 1.00E-05 0.00105 1.00E-05 1.00E-05 0.002944 0.005891 0.007741 0.012604 1.00E-05 0.076815 0.002333 1.00E-05 1.00E-05 1.00E-05 0.002061 0.006462 1.00E-05 1.00E-05 0.005058 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00543 0.009725 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005773 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.012489 0.011711 1.00E-05 0.017153 1.00E-05 0.028453 0.030419 0.001299 1.00E-05 0.020994 1.00E-05 1.00E-05 1.00E-05 0.00463 0.001747 0.007514 0.00455 1.00E-05 1.00E-05 0.003172 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.083006 0.003821 0.002002 1.00E-05 0.042478 1.00E-05 1.00E-05 1.00E-05 0.007874 1.00E-05 1.00E-05 0.0106 0.002038 1.00E-05 0.011946 0.003509 1.00E-05 0.006795 1.00E-05 1.00E-05 1.00E-05 0.002473 1.00E-05 0.000478 1.00E-05 1.00E-05 0.007009 1.00E-05 1.00E-05 0.005108 0.055473 0.004178 0.002182 1.00E-05 0.004172 1.00E-05 0.014549 0.004393 0.005149 0.069305 0.008481 0.012574 0.007454 1.00E-05 0.013138 0.00398 0.010608 0.011914 0.013154 0.015285 0.060469 1.00E-05 1.00E-05 0.003808 0.006711 1.00E-05 1.00E-05 0.000562 0.059034 1.00E-05 1.80E-05 0.043158 0.009683 0.00061 1.00E-05 0.064926 0.013505 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.03886 0.015312 1.00E-05 0.011103 1.00E-05 0.013108 1.00E-05 1.00E-05 0.042459 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.008507 1.00E-05 1.00E-05 0.013611 0.009922 0.005489 1.00E-05 1.00E-05 0.020858 0.0249 1.00E-05 0.034099 1.00E-05 1.00E-05 0.045617 0.015919 0.009642 1.00E-05 0.025578 1.00E-05 0.019279 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.30E-05 1.00E-05 0.017314 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001159 1.00E-05 1.00E-05 1.00E-05 0.017484 1.00E-05 0.007394 0.011268 1.00E-05 0.006195 1.00E-05 1.00E-05 1.00E-05 0.68622 0.00059 0.001926 0.006375 0.005814 1.00E-05 0.019482 0.028868 1.00E-05 0.027239 0.021092 1.00E-05 0.007701 0.0129 1.00E-05 1.00E-05 1.00E-05 0.021284 1.00E-05 1.00E-05 1.00E-05 0.014205 0.007608 0.019179 0.000224 0.018414 0.007472 0.012901 0.00929 0.001319 0.040621 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002774 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003386 0.004399 0.014386 0.00694 0.006688 1.60E-05 0.001918 1.00E-05 1.00E-05 0.000648 1.00E-05 0.003944 1.00E-05 1.00E-05 0.010705 0.000705 1.00E-05 1.00E-05 0.01305 0.013135 1.00E-05 0.004986 0.00362 1.00E-05 0.003646 1.00E-05 0.005072 1.00E-05 1.00E-05 1.00E-05 0.011034 1.00E-05 1.00E-05 0.000211 1.00E-05 1.00E-05 1.00E-05 0.003768 1.00E-05 1.00E-05 0.002245 1.00E-05 0.002257 0.000384 1.00E-05 0.00624 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001664 1.00E-05 1.00E-05 0.009843 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.015134 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.008816 0.015042 1.00E-05 1.00E-05 1.00E-05 0.000758 0.012101 1.00E-05 1.00E-05 0.009519 1.80E-05 0.006444 1.00E-05 1.00E-05 0.095687 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004175 0.003397 1.00E-05 0.015563 1.00E-05 1.00E-05 1.00E-05 0.011051 1.00E-05 1.00E-05 1.00E-05 0.016182 1.00E-05 1.00E-05 0.004814 0.008282 1.00E-05 0.061661 1.00E-05 0.001581 0.001088 1.00E-05 1.00E-05 0.007645 0.004916 1.00E-05 1.00E-05 0.009646 1.00E-05 1.00E-05 0.026676 1.00E-05 0.026342 0.016524 0.025082 0.0233 1.00E-05 1.60E-05 1.00E-05 0.000717 0.024596 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.023263 1.00E-05 0.010737 0.007198 1.00E-05 1.00E-05 0.028726 1.00E-05 1.00E-05 0.049465 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.010653 0.003642 0.00982 0.01574 0.010092 0.000947 0.012086 0.014266 0.01613 0.011283 0.003237 1.00E-05 0.008135 1.00E-05 1.00E-05 1.00E-05 0.027798 1.00E-05 0.009412 0.005125 0.004294 0.00291 0.008584 0.005295 0.000736 0.011027 1.00E-05 1.00E-05 1.00E-05 0.011696 0.011143 0.017572 0.012375 0.004099 1.00E-05 0.002371 0.00332 0.000167 1.00E-05 0.259551 0.000431 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00364 0.006186 0.008568 0.008558 1.00E-05 0.004177 1.00E-05 0.003563 1.00E-05 0.005807 1.00E-05 0.031132 1.00E-05 1.00E-05 1.00E-05 0.000505 0.005148 0.759165 0.006523 0.184755 0.006823 1.00E-05 1.00E-05 1.00E-05 0.08015 1.00E-05 1.00E-05 0.017386 0.006392 0.072887 1.00E-05 1.00E-05 0.071846 0.01298 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.009275 1.00E-05 0.877175 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00463 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003739 1.00E-05 1.00E-05 1.00E-05 0.003065 1.00E-05 0.008861 0.010262 1.00E-05 0.005734 1.00E-05 1.00E-05 1.00E-05 0.00417 1.00E-05 1.00E-05 1.00E-05 0.004053 0.015239 0.813211 0.585636 0.002016 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.02678 1.00E-05 0.000483 0.00691 0.031598 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00481 1.00E-05 1.00E-05 1.00E-05 0.002282 1.80E-05 0.00058 1.00E-05 1.00E-05 0.003141 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.01094 0.008708 0.003258
|
initial_data/brca_tcga_pan_can_atlas_2018/data_protein_quantification.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_protein_quantification_zscores.txt
ADDED
|
The diff for this file is too large to render.
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|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_resource_definition.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
RESOURCE_ID DISPLAY_NAME RESOURCE_TYPE DESCRIPTION OPEN_BY_DEFAULT PRIORITY
|
| 2 |
+
IDC_OHIF_V2 CT Scan PATIENT CT Scan TRUE 1
|
initial_data/brca_tcga_pan_can_atlas_2018/data_resource_patient.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_rppa.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_rppa_zscores.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_sv.txt
ADDED
|
The diff for this file is too large to render.
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|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_sample_acquisition.txt
ADDED
|
The diff for this file is too large to render.
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|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_status.txt
ADDED
|
The diff for this file is too large to render.
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|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/data_timeline_treatment.txt
ADDED
|
The diff for this file is too large to render.
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|
|
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_armlevel_cna.txt
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: GENERIC_ASSAY
|
| 3 |
+
generic_assay_type: ARMLEVEL_CNA
|
| 4 |
+
datatype: CATEGORICAL
|
| 5 |
+
stable_id: armlevel_cna
|
| 6 |
+
profile_name: Putative arm-level copy-number from GISTIC
|
| 7 |
+
profile_description: Putative arm-level copy-number from GISTIC 2.0.
|
| 8 |
+
data_filename: data_armlevel_cna.txt
|
| 9 |
+
show_profile_in_analysis_tab: true
|
| 10 |
+
generic_entity_meta_properties: NAME,DESCRIPTION
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_clinical_patient.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: CLINICAL
|
| 3 |
+
datatype: PATIENT_ATTRIBUTES
|
| 4 |
+
data_filename: data_clinical_patient.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_clinical_sample.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: CLINICAL
|
| 3 |
+
datatype: SAMPLE_ATTRIBUTES
|
| 4 |
+
data_filename: data_clinical_sample.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_cna.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: COPY_NUMBER_ALTERATION
|
| 3 |
+
datatype: DISCRETE
|
| 4 |
+
stable_id: gistic
|
| 5 |
+
show_profile_in_analysis_tab: true
|
| 6 |
+
profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.
|
| 7 |
+
profile_name: Putative copy-number alterations from GISTIC
|
| 8 |
+
data_filename: data_cna.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_cna_hg19_seg.txt
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: COPY_NUMBER_ALTERATION
|
| 3 |
+
datatype: SEG
|
| 4 |
+
stable_id: brca_tcga_pan_can_atlas_2018_segment
|
| 5 |
+
show_profile_in_analysis_tab: false
|
| 6 |
+
description: Segment data for the TCGA PanCanAtlas study.
|
| 7 |
+
profile_name: Segment data values
|
| 8 |
+
reference_genome_id: hg19
|
| 9 |
+
data_filename: data_cna_hg19.seg
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_gene_panel_matrix.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: GENE_PANEL_MATRIX
|
| 3 |
+
datatype: GENE_PANEL_MATRIX
|
| 4 |
+
data_filename: data_gene_panel_matrix.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_genetic_ancestry.txt
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: GENERIC_ASSAY
|
| 3 |
+
generic_assay_type: GENETIC_ANCESTRY
|
| 4 |
+
datatype: LIMIT-VALUE
|
| 5 |
+
stable_id: genetic_ancestry
|
| 6 |
+
profile_name: Genetic Ancestry
|
| 7 |
+
profile_description: Genetic ancestries were determined using five different methods as described in Carrot-Zhang et al (2020). These consensus calls were created based on the ancestral population that received the majority of assignments for each patient. The original data is <a href="https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020">here</a>.
|
| 8 |
+
data_filename: data_genetic_ancestry.txt
|
| 9 |
+
show_profile_in_analysis_tab: true
|
| 10 |
+
generic_entity_meta_properties: NAME
|
| 11 |
+
value_sort_order: ASC
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_log2_cna.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: COPY_NUMBER_ALTERATION
|
| 3 |
+
datatype: LOG2-VALUE
|
| 4 |
+
stable_id: log2CNA
|
| 5 |
+
show_profile_in_analysis_tab: false
|
| 6 |
+
profile_description: Log2 copy-number values for each gene (from Affymetrix SNP6).
|
| 7 |
+
profile_name: Log2 copy-number values
|
| 8 |
+
data_filename: data_log2_cna.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_methylation_hm27_hm450_merged.txt
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: GENERIC_ASSAY
|
| 3 |
+
generic_assay_type: METHYLATION
|
| 4 |
+
datatype: LIMIT-VALUE
|
| 5 |
+
stable_id: methylation_hm27_hm450_merge
|
| 6 |
+
profile_name: Methylation (HM27 and HM450 merge)
|
| 7 |
+
profile_description: Methylation between-platform (hm27 and hm450) normalization values.
|
| 8 |
+
data_filename: data_methylation_hm27_hm450_merged.txt
|
| 9 |
+
show_profile_in_analysis_tab: true
|
| 10 |
+
value_sort_order: DESC
|
| 11 |
+
generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_methylation_hm450.txt
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: GENERIC_ASSAY
|
| 3 |
+
generic_assay_type: METHYLATION
|
| 4 |
+
datatype: LIMIT-VALUE
|
| 5 |
+
stable_id: methylation_hm450
|
| 6 |
+
profile_name: Methylation (HM450)
|
| 7 |
+
profile_description: Methylation beta-values (HM450 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.
|
| 8 |
+
data_filename: data_methylation_hm450.txt
|
| 9 |
+
show_profile_in_analysis_tab: true
|
| 10 |
+
value_sort_order: DESC
|
| 11 |
+
generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
stable_id: rna_seq_v2_mrna
|
| 3 |
+
genetic_alteration_type: MRNA_EXPRESSION
|
| 4 |
+
datatype: CONTINUOUS
|
| 5 |
+
show_profile_in_analysis_tab: FALSE
|
| 6 |
+
profile_name: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
|
| 7 |
+
profile_description:mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
|
| 8 |
+
data_filename: data_mrna_seq_v2_rsem.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: MRNA_EXPRESSION
|
| 3 |
+
datatype: Z-SCORE
|
| 4 |
+
stable_id: rna_seq_v2_mrna_median_all_sample_Zscores
|
| 5 |
+
show_profile_in_analysis_tab: TRUE
|
| 6 |
+
profile_name: mRNA expression z-scores relative to all samples (log RNA Seq V2 RSEM)
|
| 7 |
+
profile_description: Log-transformed mRNA expression z-scores compared to the expression distribution of all samples (RNA Seq V2 RSEM).
|
| 8 |
+
data_filename: data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: MRNA_EXPRESSION
|
| 3 |
+
datatype: Z-SCORE
|
| 4 |
+
data_filename: data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
|
| 5 |
+
stable_id: rna_seq_v2_mrna_median_Zscores
|
| 6 |
+
show_profile_in_analysis_tab: TRUE
|
| 7 |
+
profile_description: mRNA expression z-scores (RNA Seq V2 RSEM) compared to the expression distribution of each gene tumors that are diploid for this gene.
|
| 8 |
+
profile_name: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM)
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: MRNA_EXPRESSION
|
| 3 |
+
datatype: Z-SCORE
|
| 4 |
+
stable_id: rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores
|
| 5 |
+
show_profile_in_analysis_tab: TRUE
|
| 6 |
+
profile_name: mRNA expression z-scores relative to normal samples (log RNA Seq V2 RSEM)
|
| 7 |
+
profile_description: Expression z-scores of tumor samples compared to the expression distribution of all log-transformed mRNA expression of adjacent normal samples in the cohort.
|
| 8 |
+
data_filename: data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_mutations.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cancer_study_identifier: brca_tcga_pan_can_atlas_2018
|
| 2 |
+
genetic_alteration_type: MUTATION_EXTENDED
|
| 3 |
+
datatype: MAF
|
| 4 |
+
stable_id: mutations
|
| 5 |
+
show_profile_in_analysis_tab: true
|
| 6 |
+
profile_description: Mutation data from whole exome sequencing of 1,084 Breast Invasive Carcinoma samples.
|
| 7 |
+
profile_name: Mutations
|
| 8 |
+
data_filename: data_mutations.txt
|
initial_data/brca_tcga_pan_can_atlas_2018/meta_phosphoprotein_quantification.txt
ADDED
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@@ -0,0 +1,12 @@
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: GENERIC_ASSAY
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generic_assay_type: PHOSPHOSITE_QUANTIFICATION
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datatype: LIMIT-VALUE
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stable_id: phosphoprotein_quantification
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profile_name: Phosphoprotein site level expression data by CPTAC (TMT, Log2ratio)
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profile_description: Phosphoprotein site level expression data given in log-ratio (normalized) by CPTAC.
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data_filename: data_phosphoprotein_quantification.txt
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show_profile_in_analysis_tab: true
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pivot_threshold_value: 0
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value_sort_order: ASC
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generic_entity_meta_properties: NAME,DESCRIPTION,GENE_SYMBOL,PHOSPHOSITE,ATTRIBUTE_NAME
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initial_data/brca_tcga_pan_can_atlas_2018/meta_protein_quantification.txt
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: PROTEIN_LEVEL
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datatype: CONTINUOUS
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stable_id: protein_quantification
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show_profile_in_analysis_tab: false
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profile_description: Protein levels measured with mass spectrometry by the Clinical Proteomic Tumor Analysis Consortium (CPTAC)
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profile_name: Protein levels (mass spectrometry by CPTAC)
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data_filename: data_protein_quantification.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_protein_quantification_zscores.txt
ADDED
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@@ -0,0 +1,8 @@
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: PROTEIN_LEVEL
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datatype: Z-SCORE
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stable_id: protein_quantification_zscores
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show_profile_in_analysis_tab: true
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profile_description: Protein level z-scores measured with mass spectrometry by the Clinical Proteomic Tumor Analysis Consortium (CPTAC)
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profile_name: Protein expression z-scores (mass spectrometry by CPTAC)
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data_filename: data_protein_quantification_zscores.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_resource_definition.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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resource_type: DEFINITION
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data_filename: data_resource_definition.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_resource_patient.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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resource_type: PATIENT
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data_filename: data_resource_patient.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_rppa.txt
ADDED
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@@ -0,0 +1,8 @@
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: PROTEIN_LEVEL
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datatype: LOG2-VALUE
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stable_id: rppa
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show_profile_in_analysis_tab: false
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profile_name: Protein expression (RPPA)
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profile_description: Protein expression measured by reverse-phase protein array
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data_filename: data_rppa.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_rppa_zscores.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: PROTEIN_LEVEL
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datatype: Z-SCORE
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stable_id: rppa_Zscores
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show_profile_in_analysis_tab: true
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profile_name: Protein expression z-scores (RPPA)
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| 7 |
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profile_description: Protein expression, measured by reverse-phase protein array, Z-scores
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data_filename: data_rppa_zscores.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_study.txt
ADDED
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type_of_cancer: brca
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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name: Breast Invasive Carcinoma (TCGA, PanCancer Atlas)
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short_name: Breast Invasive Carcinoma Breast (TCGA PanCan 2018)
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description: Breast Invasive Carcinoma TCGA PanCancer data. The original data is <a href="https://gdc.cancer.gov/about-data/publications/pancanatlas">here</a>. The publications are <a href="https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html">here</a>.
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groups: PUBLIC;PANCAN
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pmid: 29625048,29596782,29622463,29617662,29625055,29625050,29617662,30643250,32214244,29625049,29850653,36334560
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citation: TCGA, Cell 2018
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initial_data/brca_tcga_pan_can_atlas_2018/meta_sv.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: STRUCTURAL_VARIANT
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datatype: SV
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stable_id: structural_variants
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show_profile_in_analysis_tab: true
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profile_name: Structural variants
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profile_description: Structural Variant Data.
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data_filename: data_sv.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_sample_acquisition.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: CLINICAL
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datatype: TIMELINE
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data_filename: data_timeline_sample_acquisition.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_status.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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| 2 |
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genetic_alteration_type: CLINICAL
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| 3 |
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datatype: TIMELINE
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| 4 |
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data_filename: data_timeline_status.txt
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initial_data/brca_tcga_pan_can_atlas_2018/meta_timeline_treatment.txt
ADDED
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cancer_study_identifier: brca_tcga_pan_can_atlas_2018
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genetic_alteration_type: CLINICAL
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datatype: TIMELINE
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| 4 |
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data_filename: data_timeline_treatment.txt
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initial_data/root/Reactome_UniProt2Reactome_Homo_sapiens_2026-03-23.txt
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initial_data/root/idmapping_model_organism_9606_2026_05_24.gff
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