Upload esm2_only_v1/core_embeddings/extraction_report.json
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work/esm2_only_v1/core_embeddings/extraction_report.json
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{
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"model_name": "facebook/esm2_t30_150M_UR50D",
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"model_frozen": true,
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"hidden_dim": 640,
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"started_at_epoch": 1784277096.2175195,
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"completed_at_epoch": 1784277830.1549609,
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"seconds": 733.9374420642853,
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"unique_sequences_total": 15403,
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"unique_sequences_encoded_once": true,
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"long_sequence_overlap": 128,
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"max_residues": 1000,
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"bos_offset_verified": true,
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"resume_supported": true,
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"atomic_commit": true,
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"save_dtype": "float16",
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"protein_shape": [
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14231,
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640
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],
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"mutation_shape": [
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1055821,
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640
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],
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"ptm_shape": [
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166288,
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640
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],
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"protein_valid_rows": 14231,
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"mutation_valid_rows": 1022481,
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"ptm_valid_rows": 161834,
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"protein_invalid_rows": 0,
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"mutation_invalid_rows": 33340,
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"ptm_invalid_rows": 4454,
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"benchmark_mutations_all_sequence_valid": true,
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"invalid_rows_are_zero_placeholders": true,
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"invalid_rows_are_not_esm_embeddings": true,
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"integrity_pass": true,
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"cache_sha256_file": "/root/autodl-tmp/bio/disease_mutation_ptm_gcl/work/esm2_only_v1/core_embeddings/cache_sha256.txt",
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"gpu_memory_allocated_mib": 573,
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"cpu_memory_used_gib": null,
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"disk_free_gib": 14.427417755126953
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}
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