code
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4.93k
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1.27k
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3 values
def get_gap(self, tol=0.001, abs_tol=False, spin=None): (cbm, vbm) = self.get_cbm_vbm(tol, abs_tol, spin) return max((cbm - vbm), 0.0)
Expects a DOS object and finds the gap. Args: tol: tolerance in occupations for determining the gap abs_tol: An absolute tolerance (True) and a relative one (False) spin: Possible values are None - finds the gap in the summed densities, Up - finds the gap in the up spin channel, Down - finds the gap in the down spin c...
codesearchnet
def get_uri(self, key, is_list=False, is_optional=False, is_secret=False, is_local=False, default=None, options=None): if is_list: return self._get_typed_list_value(key=key, target_type=UriSpec, type_convert=self.parse_uri_spec, is_optional=is_optional, is_secret=is_secret, is_local=is_local, default=defaul...
Get a the value corresponding to the key and converts it to `UriSpec`. Args key: the dict key. is_list: If this is one element or a list of elements. is_optional: To raise an error if key was not found. is_secret: If the key is a secret. is_local: If the key is a local to this service. default: default value if is_opt...
codesearchnet
def GetEntries(self, parser_mediator, match=None, **unused_kwargs): devices = match.get('Devices', {}) for (device_identifier, device_information) in iter(devices.items()): datetime_value = device_information.get('Connected', None) if (not datetime_value): continue event_data...
Extract device information from the iPod plist. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. match (Optional[dict[str: object]]): keys extracted from PLIST_KEYS.
codesearchnet
def batch_frexp(inputs, max_bit=31): shape_of_input = inputs.size() inputs = inputs.view(-1) output_m, output_e = np.frexp(inputs.cpu().numpy()) tmp_m = [] for m in output_m: int_m_shifted = int(decimal.Decimal(m * 2 ** max_bit).quantize(decimal.Decimal('1'), rounding=decimal.ROUND_HALF_UP))...
Decompose the scaling factor into mantissa and twos exponent. Args: scaling_factor (`torch.Tensor`): Target scaling factor to decompose. Returns: ``Tuple(torch.Tensor, torch.Tensor)`: mantisa and exponent
github-repos
def transformer_moe_2k(): hparams = transformer_moe_8k() hparams.batch_size = 2048 hparams.default_ff = 'sep' encoder_archi = 'a/a/a/a/a' decoder_archi = 'a-sepm/a-sepm/a-moe/a-sepm/a-sepm' hparams.layer_types = '{} return hparams
Base transformers model with moe. Will have the following architecture: * No encoder. * Layer 0: a - sep (self-attention - unmasked separable convolutions) * Layer 1: a - sep * Layer 2: a - sep * Layer 3: a - sep * Layer 4: a - sep * Decoder architecture: * Layer 0: a - a - sepm (self-attention - enco/deco-attention...
codesearchnet
def load_stopwords(self, path): if path: with open(path) as f: self.stopwords = set(f.read().splitlines()) else: self.stopwords = set(pkgutil.get_data('textplot', 'data/stopwords.txt').decode('utf8').splitlines())
Load a set of stopwords. Args: path (str): The stopwords file path.
codesearchnet
def For(start, limit, delta, inputs, body, name=None, hostmem=None, rewrite_with_while=None): if rewrite_with_while: return _ForUsingWhile(start, limit, delta, inputs, body, name, hostmem) if body.captured_inputs: ret = gen_functional_ops._for(start, limit, delta, inputs + body.captured_inputs, ...
out = input; for i in range(start, limit, delta) out = body(i, out). Args: start: A `Tensor` of type `int32`. limit: A `Tensor` of type `int32`. delta: A `Tensor` of type `int32`. inputs: A list of `Tensor` objects. A list of input tensors whose types are T. body: A function takes a list of tensors and returns another...
github-repos
def sparse_top_k_categorical_accuracy(y_true, y_pred, k=5): y_pred_rank = tensor_conversion.convert_to_tensor_v2_with_dispatch(y_pred).shape.ndims y_true_rank = tensor_conversion.convert_to_tensor_v2_with_dispatch(y_true).shape.ndims if y_true_rank is not None and y_pred_rank is not None: if y_pred_...
Computes how often integer targets are in the top `K` predictions. Standalone usage: >>> y_true = [2, 1] >>> y_pred = [[0.1, 0.9, 0.8], [0.05, 0.95, 0]] >>> m = tf.keras.metrics.sparse_top_k_categorical_accuracy( ... y_true, y_pred, k=3) >>> assert m.shape == (2,) >>> m.numpy() array([1., 1.], dtype=float32) Args...
github-repos
def __init__( self, name, description='', creator='', raw={}): BossResource.__init__(self, name, description, creator, raw)
Constructor. Args: name (string): Collection name. description (optional[string]): Collection description. Defaults to empty. creator (optional[string]): Resource creator. raw (optional[dictionary]): Holds JSON data returned by the Boss API on a POST (create) or GET operation.
juraj-google-style
def _wrap_method(name): method = getattr(datetime.datetime, name) @functools.wraps(method, ("__name__", "__doc__"), ()) def wrapper(self, *args, **kw): r = method(self, *args, **kw) if isinstance(r, datetime.datetime) and not isinstance(r, type(self)): r = type(self)(r) return r setat...
Wrap a method. Patch a method which might return a datetime.datetime to return a datetime_tz.datetime_tz instead. Args: name: The name of the method to patch
juraj-google-style
def compute_video_metrics_from_predictions(predictions, decode_hparams): all_results = {} (ssim_all_decodes, psnr_all_decodes) = ([], []) for single_decode in predictions: args = get_zipped_dataset_from_predictions(single_decode) (psnr_single, ssim_single) = compute_one_decoding_video_metric...
Computes metrics from predictions. Args: predictions: list of list of dicts. outer length: num_decodes, inner_length: num_samples decode_hparams: Decode hparams. instance of HParams. Returns: statistics: dict of Tensors, key being the metric with each Tensor having the shape (num_samples, num_frames).
codesearchnet
def bytes(self) -> bytes | None: if self.part.text: return self.text.encode() if isinstance(self.part.inline_data, genai_types.Blob): return self.part.inline_data.data return None
Returns part contents as bytes. Returns: Text encoded into bytes or bytes from inline data if the underlying part is a Blob.
github-repos
def apply(self, predictions: Iterable[AnomalyPrediction]) -> AnomalyPrediction: result_dict: dict[str, Any] = {} _AggModelIdMixin.add_model_id(self, result_dict) _SourcePredictionMixin.add_source_predictions(self, result_dict, predictions) scores = [prediction.score for prediction in predictions if pred...
Applies the score aggregation function to a list of predictions. Args: predictions (Iterable[AnomalyPrediction]): A collection of `AnomalyPrediction` objects to be aggregated. Returns: AnomalyPrediction: A single `AnomalyPrediction` object with the aggregated score. The aggregated score is determined as follows: - I...
github-repos
def load(self, binary: pyquil.Program) -> 'QuantumFlowQVM': assert self.status in ['connected', 'done'] prog = quil_to_program(str(binary)) self._prog = prog self.program = binary self.status = 'loaded' return self
Load a pyQuil program, and initialize QVM into a fresh state. Args: binary: A pyQuil program
juraj-google-style
def new_message_from_header(header): message_type = header.message_type if (not isinstance(message_type, Type)): try: if isinstance(message_type, str): message_type = Type[message_type] elif isinstance(message_type, int): message_type = Type(messag...
Given an OF Header, return an empty message of header's message_type. Args: header (~pyof.v0x01.common.header.Header): Unpacked OpenFlow Header. Returns: Empty OpenFlow message of the same type of message_type attribute from the given header. The header attribute of the message will be populated. Raises: KytosUndefi...
codesearchnet
def publish(self, message): if (not isinstance(message, types.PubsubMessage)): message = types.PubsubMessage(**message) future = None with self._state_lock: if (not self.will_accept(message)): return future new_size = (self._size + message.ByteSize()) new_count = ...
Publish a single message. Add the given message to this object; this will cause it to be published once the batch either has enough messages or a sufficient period of time has elapsed. This method is called by :meth:`~.PublisherClient.publish`. Args: message (~.pubsub_v1.types.PubsubMessage): The Pub/Sub message. R...
codesearchnet
def __call__(self, stream, content_type): try: return json.load(codecs.getreader('utf-8')(stream)) finally: stream.close()
Decode a JSON object into the corresponding Python object. Args: stream (stream): The response stream to be deserialized. content_type (str): The content type of the response. Returns: object: Body of the response deserialized into a JSON object.
juraj-google-style
def _implicit_credentials_from_files(): credentials_filename = _get_environment_variable_file() if (not credentials_filename): credentials_filename = _get_well_known_file() if os.path.isfile(credentials_filename): extra_help = ' (produced automatically when running "gcloud auth login...
Attempts to get implicit credentials from local credential files. First checks if the environment variable GOOGLE_APPLICATION_CREDENTIALS is set with a filename and then falls back to a configuration file (the "well known" file) associated with the 'gcloud' command line tool. Returns: Credentials object associated wi...
codesearchnet
def CancelBatchJob(client, batch_job, max_poll_attempts=MAX_POLL_ATTEMPTS): batch_job_service = client.GetService('BatchJobService', 'v201809') batch_job['status'] = 'CANCELING' operation = {'operator': 'SET', 'operand': batch_job} batch_job_service.mutate([operation]) poll_attempt = 0 while ((p...
Cancels the given BatchJob. Args: client: an instantiated AdWordsClient used to cancel the BatchJob. batch_job: a BatchJob to be canceled. max_poll_attempts: an int defining the number of times the BatchJob will be checked to determine whether it has been canceled.
codesearchnet
def assert_same_structure(nest1, nest2, check_types=True): nest_util.assert_same_structure(nest_util.Modality.DATA, nest1, nest2, check_types)
Asserts that two structures are nested in the same way. Args: nest1: an arbitrarily nested structure. nest2: an arbitrarily nested structure. check_types: if `True` (default) types of sequences should be same as well. For dictionary, "type" of dictionary is considered to include its keys. In other words, two dictionar...
github-repos
def __init__(self, date_time, date_time_description): super(OLECFSummaryInformationEvent, self).__init__( date_time, date_time_description) self.name = 'Summary Information'
Initializes an event. Args: date_time (dfdatetime.DateTimeValues): date and time values. date_time_description (str): description of the meaning of the date and time values.
juraj-google-style
def preprocess_image(image_buffer, output_height, output_width, num_channels, is_training=False): if is_training: image = _decode_crop_and_flip(image_buffer, num_channels) mlperf_log.resnet_print(key=mlperf_log.INPUT_RESIZE, value=[output_height, output_width]) image = _resize_image(image, o...
Preprocesses the given image. Preprocessing includes decoding, cropping, and resizing for both training and eval images. Training preprocessing, however, introduces some random distortion of the image to improve accuracy. Args: image_buffer: scalar string Tensor representing the raw JPEG image buffer. output_height: ...
codesearchnet
def find_importer_frame(): byte = (lambda ch: (ord(ch) if PY2 else ch)) frame = inspect.currentframe() try: while frame: code = frame.f_code lasti = frame.f_lasti if (byte(code.co_code[lasti]) == dis.opmap['IMPORT_NAME']): arg = (byte(code.co_code[...
Returns the outer frame importing this "end" module. If this module is being imported by other means than import statement, None is returned. Returns: A frame object or None.
codesearchnet
def _create_environment(config): if isinstance(config.env, str): env = gym.make(config.env) else: env = config.env() if config.max_length: env = tools.wrappers.LimitDuration(env, config.max_length) if isinstance(env.action_space, gym.spaces.Box): if config.normalize_ranges: env = tools....
Constructor for an instance of the environment. Args: config: Object providing configurations via attributes. Raises: NotImplementedError: For action spaces other than Box and Discrete. Returns: Wrapped OpenAI Gym environment.
juraj-google-style
def replace_batch_norm(model): for name, module in model.named_children(): if isinstance(module, nn.BatchNorm2d): new_module = GroundingDinoFrozenBatchNorm2d(module.num_features) if not module.weight.device == torch.device('meta'): new_module.weight.data.copy_(module....
Recursively replace all `torch.nn.BatchNorm2d` with `GroundingDinoFrozenBatchNorm2d`. Args: model (torch.nn.Module): input model
github-repos
class PatchTSMixerForTimeSeriesClassification(PatchTSMixerPreTrainedModel): def __init__(self, config: PatchTSMixerConfig): super().__init__(config) self.model = PatchTSMixerModel(config) self.head = PatchTSMixerLinearHead(config=config) self.use_return_dict = config.use_return_dict...
`PatchTSMixer` for classification application. Args: config (`PatchTSMixerConfig`): Configuration. Returns: `None`.
github-repos
def connected_emulators(self, host=enums.JLinkHost.USB): res = self._dll.JLINKARM_EMU_GetList(host, 0, 0) if res < 0: raise errors.JLinkException(res) num_devices = res info = (structs.JLinkConnectInfo * num_devices)() num_found = self._dll.JLINKARM_EMU_GetL...
Returns a list of all the connected emulators. Args: self (JLink): the ``JLink`` instance host (int): host type to search (default: ``JLinkHost.USB``) Returns: List of ``JLinkConnectInfo`` specifying the connected emulators. Raises: JLinkException: if fails to enumerate devices.
juraj-google-style
def ragged_cumsum(x: ragged_tensor.Ragged, axis: int=0, exclusive: bool=False, reverse: bool=False, name: typing.Optional[str]=None): with ops.name_scope(name, 'RaggedCumSum', [x, axis, exclusive, reverse]): axis = array_ops.get_positive_axis(axis, x.shape.rank, ndims_name='rank') if axis == x.ragge...
Calculate math_ops.cumsum for a RaggedTensor. Given a ragged tensor `x`, the `result` is a ragged tensor with the same shape. One can calculate the value of `result[i_1...i_k]` as follows: ``` dense_result=tf.math.cumsum(rt.to_tensor(), axis=axis, exclusive=exclusive, reverse=reverse) result[i_1...i_k]=dense_result[i_...
github-repos
def CreateSession(cls, artifact_filter_names=None, command_line_arguments=None, debug_mode=False, filter_file_path=None, preferred_encoding='utf-8', preferred_time_zone=None, preferred_year=None): session = sessions.Session() session.artifact_filters = artifact_filter_names session.command_line_arguments = ...
Creates a session attribute container. Args: artifact_filter_names (Optional[list[str]]): names of artifact definitions that are used for filtering file system and Windows Registry key paths. command_line_arguments (Optional[str]): the command line arguments. debug_mode (bool): True if debug mode was enabled. filter_f...
codesearchnet
def set_status(self, on, switch=1): if isinstance(switch, int): switch = str(switch) payload = self.generate_payload(SET, {switch:on}) data = self._send_receive(payload) log.debug('set_status received data=%r', data) return data
Set status of the device to 'on' or 'off'. Args: on(bool): True for 'on', False for 'off'. switch(int): The switch to set
juraj-google-style
def draw_lines(self, *points): point_array = ffi.new('SDL_Point[]', len(points)) for i, p in enumerate(points): point_array[i] = p._ptr[0] check_int_err(lib.SDL_RenderDrawLines(self._ptr, point_array, len(points)))
Draw a series of connected lines on the current rendering target. Args: *points (Point): The points along the lines. Raises: SDLError: If an error is encountered.
juraj-google-style
def handle_event(self, event_handler, event_name, user_args, event_timeout=None, cond=None, cond_timeout=None): worker = self.executor.submit(self._handle, event_handler, event_name, user_args, event_timeout, cond, cond_timeout) return worker
Handle events that don't have registered handlers In a new thread, poll one event of specified type from its queue and execute its handler. If no such event exists, the thread waits until one appears. Args: event_handler: Handler for the event, which should take at least one argument - the event json object. event_na...
codesearchnet
def get_header(message, name): header = message.get(name) log.debug("Getting header {!r}: {!r}".format(name, header)) if header: return decode_header_part(header) return six.text_type()
Gets an email.message.Message and a header name and returns the mail header decoded with the correct charset. Args: message (email.message.Message): email message object name (string): header to get Returns: decoded header
juraj-google-style
def suggestions(self, word): suggestions = set(self._misspelling_dict.get(word, [])).union( set(self._misspelling_dict.get(word.lower(), []))) return sorted([same_case(source=word, destination=w) for w in suggestions])
Returns a list of suggestions for a misspelled word. Args: word: The word to check. Returns: List of zero or more suggested replacements for word.
juraj-google-style
def dumps(o, encoder=None): retval = "" if encoder is None: encoder = TomlEncoder(o.__class__) addtoretval, sections = encoder.dump_sections(o, "") retval += addtoretval while sections: newsections = encoder.get_empty_table() for section in sections: addtore...
Stringifies input dict as toml Args: o: Object to dump into toml preserve: Boolean parameter. If true, preserve inline tables. Returns: String containing the toml corresponding to dict
juraj-google-style
def __init__(self, section): self.section = section super().__init__('invalid section name: {}'.format(section))
Initialization of instances: Args: section (str): invalid section name. Attributes: section (str): invalid section name.
juraj-google-style
def color_string(self, x): diff_str = "" color = "black" if len(x) == 2 and self.compare_file is not None: difference = x[0] - x[1] if difference: color, sign = ('green', '-') if difference < 0 else ('red', '+') diff_str = '{}{}'....
Return a string formatted delta for the values in x. Args: x: 2-item list of integers (representing number of calls) or 2-item list of floats (representing seconds of runtime). Returns: A list with [formatted x[0], [color, formatted delta]], where color reflects whether x[1] is lower, greater, or the same as x[0].
juraj-google-style
def CheckSectionSpacing(filename, clean_lines, class_info, linenum, error): if (((class_info.last_line - class_info.starting_linenum) <= 24) or (linenum <= class_info.starting_linenum)): return matched = Match('\\s*(public|protected|private):', clean_lines.lines[linenum]) if matched: prev_li...
Checks for additional blank line issues related to sections. Currently the only thing checked here is blank line before protected/private. Args: filename: The name of the current file. clean_lines: A CleansedLines instance containing the file. class_info: A _ClassInfo objects. linenum: The number of the line to check...
codesearchnet
def create_module_file(txt, directory): name = nonpresent_module_filename() path = os.path.join(directory, name) with open(path, 'w') as fh: fh.write(txt) return path
Create a file in the given directory with a valid module name populated with the given txt. Returns: A path to the file
codesearchnet
def generate_encodeable_characters(characters: Iterable[str], encodings: Iterable[str]) -> Iterable[str]: for c in characters: for encoding in encodings: try: c.encode(encoding) yield c except UnicodeEncodeError:...
Generates the subset of 'characters' that can be encoded by 'encodings'. Args: characters: The characters to check for encodeability e.g. 'abcd'. encodings: The encodings to check against e.g. ['cp1252', 'iso-8859-5']. Returns: The subset of 'characters' that can be encoded using one of the provided encodings.
juraj-google-style
def __init__(self, make_distribution_fn, convert_to_tensor_fn=tfd.Distribution.sample, **kwargs): if isinstance(make_distribution_fn, six.string_types): make_distribution_fn = _deserialize_function(make_distribut...
Create a `DistributionLambda` Keras layer. Args: make_distribution_fn: Python `callable` that takes previous layer outputs and returns a `tfd.Distribution` instance. convert_to_tensor_fn: Python `callable` that takes a `tfd.Distribution` instance and returns a `tf.Tensor`-like object. For examples, see `class` docstri...
juraj-google-style
def padFrameRange(frange, zfill): def _do_pad(match): '\n Substitutes padded for unpadded frames.\n ' result = list(match.groups()) result[1] = pad(result[1], zfill) if result[4]: result[4] = pad(result[4], zfill) return ''.join((i for i in ...
Return the zero-padded version of the frame range string. Args: frange (str): a frame range to test zfill (int): Returns: str:
codesearchnet
def project(self, **kwargs: Dict[str, Any]) -> Union[Hist, Dict[str, Hist]]: if self.single_observable_projection: return self._project_single_observable(**kwargs) else: return self._project_dict(**kwargs)
Perform the requested projection(s). Note: All cuts on the original histograms will be reset when this function is completed. Args: kwargs (dict): Additional named args to be passed to projection_name(...) and output_key_name(...) Returns: The projected histogram(s). The projected histograms are also stored in ``outp...
juraj-google-style
def UpdateNumberOfEvents( self, number_of_consumed_events, number_of_produced_events): consumed_events_delta = 0 if number_of_consumed_events is not None: if number_of_consumed_events < self.number_of_consumed_events: raise ValueError( 'Number of consumed events smaller than...
Updates the number of events. Args: number_of_consumed_events (int): total number of events consumed by the process. number_of_produced_events (int): total number of events produced by the process. Returns: bool: True if either number of events has increased. Raises: ValueError: if the consumed or produced number of...
juraj-google-style
def get_list(self, id, name=None): return self.create_list(dict(id=id, name=name))
Get a list Returns: List: The list with the given `id`
codesearchnet
def set_pattern_actual_step(self, patternnumber, value): _checkPatternNumber(patternnumber) _checkStepNumber(value) address = _calculateRegisterAddress('actualstep', patternnumber) self.write_register(address, value, 0)
Set the 'actual step' parameter for a given pattern. Args: * patternnumber (integer): 0-7 * value (integer): 0-7
codesearchnet
def dump(voevent, file, pretty_print=True, xml_declaration=True): file.write(dumps(voevent, pretty_print, xml_declaration))
Writes the voevent to the file object. e.g.:: with open('/tmp/myvoevent.xml','wb') as f: voeventparse.dump(v, f) Args: voevent(:class:`Voevent`): Root node of the VOevent etree. file (io.IOBase): An open (binary mode) file object for writing. pretty_print pretty_print(bool): See :func:`dumps` xml_declaration(bool): ...
codesearchnet
def from_ops(*operations: ops.OP_TREE, strategy: InsertStrategy = InsertStrategy.EARLIEST, device: devices.Device = devices.UnconstrainedDevice ) -> 'Circuit': result = Circuit(device=device) result.append(operations, strategy) return r...
Creates an empty circuit and appends the given operations. Args: operations: The operations to append to the new circuit. strategy: How to append the operations. device: Hardware that the circuit should be able to run on. Returns: The constructed circuit containing the operations.
juraj-google-style
def concat(values, axis, name: str='concat'): if name is None: name = 'concat' _assert_concat_compatible_structured_tensors(values) def leaf_op(values): return array_ops.concat(values, axis) axis = array_ops.get_positive_axis(axis, values[0].rank) with ops.name_scope(name, 'Structur...
tf.concat for structured tensors. Does not support (yet) checks on illegal axis values, et cetera. Args: values: a sequence of StructuredTensors. axis: an axis to concatenate upon. name: the name of the op(s). Returns: the params reorganized according to indices.
github-repos
def get_variation_for_experiment(self, experiment_id): return self.experiment_bucket_map.get(experiment_id, {self.VARIATION_ID_KEY: None}).get(self.VARIATION_ID_KEY)
Helper method to retrieve variation ID for given experiment. Args: experiment_id: ID for experiment for which variation needs to be looked up for. Returns: Variation ID corresponding to the experiment. None if no decision available.
juraj-google-style
def delete_direct(self, addresses): with self._lock: for address in addresses: self._validate_write(address) if address in self._state: self._state[address].set_deleted() else: fut = _ContextFuture(addr...
Called in the context manager's delete method to either mark an entry for deletion , or create a new future and immediately set it for deletion in the future. Args: address_list (list of str): The unique full addresses. Raises: AuthorizationException
juraj-google-style
def process_alias_export_namespace(namespace): namespace.export_path = os.path.abspath(namespace.export_path) if os.path.isfile(namespace.export_path): raise CLIError(FILE_ALREADY_EXISTS_ERROR.format(namespace.export_path)) export_path_dir = os.path.dirname(namespace.export_path) if not os...
Validate input arguments when the user invokes 'az alias export'. Args: namespace: argparse namespace object.
juraj-google-style
def of(cls, key: SearchKey, params: SearchParams) -> 'SearchCriteria': key_name = key.value if key_name in params.disabled: raise SearchNotAllowed(key_name) elif key.inverse: return InverseSearchCriteria(key.not_inverse, params) elif key_name == b'SEQSET'...
Factory method for producing a search criteria sub-class from a search key. Args: key: The search key defining the criteria. params: The parameters that may be used by some searches.
juraj-google-style
def hpo_diseases(username, password, hpo_ids, p_value_treshold=1): try: results = query_phenomizer.query(username, password, *hpo_ids) diseases = [result for result in results if (result['p_value'] <= p_value_treshold)] return diseases except SystemExit: return None
Return the list of HGNC symbols that match annotated HPO terms. Args: username (str): username to use for phenomizer connection password (str): password to use for phenomizer connection Returns: query_result: a generator of dictionaries on the form { 'p_value': float, 'disease_source': str, 'disease_nr': int, 'gene_s...
codesearchnet
def ucast_ip(ip_addr, return_tuple=True): regex_ucast_ip = __re.compile("^((22[0-3])|(2[0-1][0-9])|(1[0-9][0-9])|([1-9]?[0-9]))\.((25[0-5])|(2[0-4][0-9])|(1[0-9][0-9])|([1-9]?[0-9]))\.((25[0-5])|(2[0-4][0-9])|(1[0-9][0-9])|([1-9]?[0-9]))\.((25[0-5])|(2[0-4][0-9])|(1[0-9][0-9])|([1-9]?[0-9]))$") if return_t...
Function to check if a address is unicast Args: ip_addr: Unicast IP address in the following format 192.168.1.1 return_tuple: Set to True it returns a IP, set to False returns True or False Returns: see return_tuple for return options
juraj-google-style
def _rpc(self, method, *args): with self._lock: apiid = next(self._counter) data = {'id': apiid, 'method': method, 'params': args} request = json.dumps(data) self._client_send(request) response = self._client_receive() if not response:...
Sends an rpc to the app. Args: method: str, The name of the method to execute. args: any, The args of the method. Returns: The result of the rpc. Raises: ProtocolError: Something went wrong with the protocol. ApiError: The rpc went through, however executed with errors.
juraj-google-style
def __cloudflare_list_zone_records(self, *, account, zoneID, **kwargs): done = False records = {} page = 1 while (not done): kwargs['page'] = page response = self.__cloudflare_request(account=account, path='/zones/{}/dns_records'.format(zoneID), args=kwargs) info = response['resu...
Helper function to list all records on a CloudFlare DNS Zone. Returns a `dict` containing the records and their information. Args: account (:obj:`CloudFlareAccount`): A CloudFlare Account object zoneID (`int`): Internal CloudFlare ID of the DNS zone **kwargs (`dict`): Additional arguments to be consumed by the API end...
codesearchnet
def run(func, options, args=(), kwargs={}, host='localhost', port=8000): run_stats = run_profilers((func, args, kwargs), options) result = None for prof in run_stats: if (not result): result = run_stats[prof]['result'] del run_stats[prof]['result'] post_data = gzip.compress(j...
Runs profilers on a function. Args: func: A Python function. options: A string with profilers configuration (i.e. 'cmh'). args: func non-keyword arguments. kwargs: func keyword arguments. host: Host name to send collected data. port: Port number to send collected data. Returns: A result of func execution.
codesearchnet
def _pool(inputs, initial_value, reduce_fn, pool_size, strides=None, padding='valid'): if padding not in ('same', 'valid'): raise ValueError(f"Invalid padding '{padding}', must be 'same' or 'valid'.") padding = padding.upper() return lax.reduce_window(inputs, initial_value, reduce_fn, pool_size, str...
Helper function to define pooling functions. Args: inputs: input data of shape `N+2`. initial_value: the initial value for the reduction. reduce_fn: a reduce function of the form `(T, T) -> T`. pool_size: a sequence of `N` integers, representing the window size to reduce over. strides: a sequence of `N` integers, repr...
github-repos
def offTagAdd(self, name, func): if ('*' in name): self.ontagaddglobs.rem(name, func) return cblist = self.ontagadds.get(name) if (cblist is None): return try: cblist.remove(func) except ValueError: pass
Unregister a callback for tag addition. Args: name (str): The name of the tag or tag glob. func (function): The callback func(node, tagname, tagval).
codesearchnet
def _cast_value(self, value): if (self.convert_datetimes): try: date_time = datetime.datetime.fromtimestamp(float(value)) if datetime.datetime(1970, 1, 1) > date_time: raise ValueError else: ret...
Internal method that makes sure every value in dictionary is properly cast into the correct types, instead of just treating everything like a string from the csv file. Args: value : The value to be casted Returns: A casted Value.
juraj-google-style
def distribute_tensor(tensor, layout): if isinstance(tensor, KerasTensor): return tensor return distribution_lib.distribute_tensor(tensor, layout)
Change the layout of a Tensor value in the jit function execution. Args: tensor: a Tensor to change the layout. layout: `TensorLayout` to be applied on the value. Returns: a new value with the specified tensor layout.
github-repos
def delete(self, id, **kwargs): if (id is None): path = self.path else: if (not isinstance(id, int)): id = id.replace('/', '%2F') path = ('%s/%s' % (self.path, id)) self.gitlab.http_delete(path, **kwargs)
Delete an object on the server. Args: id: ID of the object to delete **kwargs: Extra options to send to the server (e.g. sudo) Raises: GitlabAuthenticationError: If authentication is not correct GitlabDeleteError: If the server cannot perform the request
codesearchnet
def quadratic_2d(data): arg_data_max = np.argmax(data) i, j = np.unravel_index(arg_data_max, data.shape) z_ = data[i-1:i+2, j-1:j+2] try: a = (-z_[0,0] + 2*z_[0,1] - z_[0,2] + 2*z_[1,0] + 5*z_[1,1] + 2*z_[1,2] - z_[2,0] + 2*z_[2,1] - z_[2,2]) / 9 ...
Compute the quadratic estimate of the centroid in a 2d-array. Args: data (2darray): two dimensional data array Returns center (tuple): centroid estimate on the row and column directions, respectively
juraj-google-style
def get(self, ID, index='vector-web-s'): url = self.get_url % index r = self.gbdx_connection.get(url + ID) r.raise_for_status() return r.json()
Retrieves a vector. Not usually necessary because searching is the best way to find & get stuff. Args: ID (str): ID of the vector object index (str): Optional. Index the object lives in. defaults to 'vector-web-s' Returns: record (dict): A dict object identical to the json representation of the catalog record
juraj-google-style
def forward(self, inputs_embeddings=None, output_attentions=None, output_hidden_states=None, return_dict=None): output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions output_hidden_states = output_hidden_states if output_hidden_states is not None else self.conf...
Args: inputs_embeddings (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`): Flattened feature map (output of the backbone + projection layers) that is passed to the encoder. output_attentions (`bool`, *optional*): Whether or not to return the attentions tensors of all attention layers. See `att...
github-repos
def __init__(self, timestep, natoms, box, data): self.timestep = timestep self.natoms = natoms self.box = box self.data = data
Base constructor. Args: timestep (int): Current timestep. natoms (int): Total number of atoms in the box. box (LammpsBox): Simulation box. data (pd.DataFrame): Dumped atomic data.
juraj-google-style
def extend(self, elts): elts = elts[:] self._in_deque.append(elts) event = self._event_for(elts) self._event_deque.append(event) return event
Adds elts to the tasks. Args: elts (Sequence): a iterable of elements that can be appended to the task's bundle_field. Returns: Event: an event that can be used to wait on the response.
juraj-google-style
def _get_fullname(obj): if not hasattr(obj, "__name__"): obj = obj.__class__ if obj.__module__ in ("builtins", "__builtin__"): return obj.__name__ return "{}.{}".format(obj.__module__, obj.__name__)
Get the full name of an object including the module. Args: obj: An object. Returns: The full class name of the object.
juraj-google-style
def set_scf_algorithm_and_iterations(self, algorithm="diis", iterations=50): available_algorithms = {"diis", "dm", "diis_dm", "diis_gdm", "gdm", "rca", "rca_diis", "roothaan"} if algorithm.lower() not in available_algorith...
Set algorithm used for converging SCF and max number of SCF iterations. Args: algorithm: The algorithm used for converging SCF. (str) iterations: The max number of SCF iterations. (Integer)
juraj-google-style
def _finalize_outputs(cls, mapreduce_spec, mapreduce_state): if (mapreduce_spec.mapper.output_writer_class() and mapreduce_state.result_status == model.MapreduceState.RESULT_SUCCESS): mapreduce_spec.mapper.output_writer_class().finalize_job(mapreduce_state)
Finalize outputs. Args: mapreduce_spec: an instance of MapreduceSpec. mapreduce_state: an instance of MapreduceState.
juraj-google-style
def create_game(self, map_name): map_inst = maps.get(map_name) map_data = map_inst.data(self._run_config) if map_name not in self._saved_maps: for controller in self._controllers: controller.save_map(map_inst.path, map_data) self._saved_maps.add(map_name) create = sc_pb.Re...
Create a game for the agents to join. Args: map_name: The map to use.
juraj-google-style
def forward(self, hidden_states: List[torch.Tensor], patch_height=None, patch_width=None) -> List[torch.Tensor]: out = [] for i, hidden_state in enumerate(hidden_states): if i not in self.neck_ignore_stages: cls_token, hidden_state = (hidden_state[:, 0], hidden_state[:, 1:]) batc...
Args: hidden_states (`List[torch.FloatTensor]`, each of shape `(batch_size, sequence_length + 1, hidden_size)`): List of hidden states from the backbone.
github-repos
def connect_engine(self): try: self.connection = self.engine.connect() return True except sa.exc.OperationalError as opex: LOG.fatal("Could not connect to the database. The error was: '%s'", str(opex)) return False
Establish a connection to the database. Provides simple error handling for fatal errors. Returns: True, if we could establish a connection, else False.
codesearchnet
def _ReadStreamDataTypeDefinition(self, definitions_registry, definition_values, definition_name, is_member=False): if is_member: supported_definition_values = self._SUPPORTED_DEFINITION_VALUES_ELEMENTS_MEMBER_DATA_TYPE else: supported_definition_values = self._SUPPORTED_DEFINITION_VALUES_ELEMEN...
Reads a stream data type definition. Args: definitions_registry (DataTypeDefinitionsRegistry): data type definitions registry. definition_values (dict[str, object]): definition values. definition_name (str): name of the definition. is_member (Optional[bool]): True if the data type definition is a member data type defi...
codesearchnet
def write_to_path(self,path,suffix='',format='png',overwrite=False): if os.path.exists(path) and overwrite is False: raise ValueError("Error: use ovewrite=True to overwrite images") if not os.path.exists(path): os.makedirs(path) for i,r in self.iterrows(): spath = os.path.jo...
Output the data the dataframe's 'image' column to a directory structured by project->sample and named by frame Args: path (str): Where to write the directory of images suffix (str): for labeling the imaages you write format (str): default 'png' format to write the file overwrite (bool): default False. if true can over...
juraj-google-style
def get_extrema(self, normalize_rxn_coordinate=True): x = np.arange(0, np.max(self.r), 0.01) y = (self.spline(x) * 1000) scale = (1 if (not normalize_rxn_coordinate) else (1 / self.r[(- 1)])) min_extrema = [] max_extrema = [] for i in range(1, (len(x) - 1)): if ((y[i] < y[(i - 1)]) and (...
Returns the positions of the extrema along the MEP. Both local minimums and maximums are returned. Args: normalize_rxn_coordinate (bool): Whether to normalize the reaction coordinate to between 0 and 1. Defaults to True. Returns: (min_extrema, max_extrema), where the extrema are given as [(x1, y1), (x2, y2), ...].
codesearchnet
def install(self, ref, table_name=None, index_columns=None,logger=None): try: obj_number = ObjectNumber.parse(ref) if isinstance(obj_number, TableNumber): table = self._library.table(ref) connection = self._backend._get_connection() ...
Finds partition by reference and installs it to warehouse db. Args: ref (str): id, vid (versioned id), name or vname (versioned name) of the partition.
juraj-google-style
def _fill_from_default(self, default_job_config): if (self._job_type != default_job_config._job_type): raise TypeError(((('attempted to merge two incompatible job types: ' + repr(self._job_type)) + ', ') + repr(default_job_config._job_type))) new_job_config = self.__class__() default_job_properties ...
Merge this job config with a default job config. The keys in this object take precedence over the keys in the default config. The merge is done at the top-level as well as for keys one level below the job type. Arguments: default_job_config (google.cloud.bigquery.job._JobConfig): The default job config that will be u...
codesearchnet
def set_bool(self, location, value): element = self._handle_location(location) if isinstance(value, basestring): value = True if value.upper() == "TRUE" else False elif not isinstance(value, bool): raise ValueError if value is True: element.te...
Set a boolean value. Casper booleans in XML are string literals of "true" or "false". This method sets the text value of "location" to the correct string representation of a boolean. Args: location: Element or a string path argument to find() value: Boolean or string value to set. (Accepts "true"/"True"/"TRUE"; all o...
juraj-google-style
def update_detector(self, detector_id, detector): resp = self._put(self._u(self._DETECTOR_ENDPOINT_SUFFIX, detector_id), data=detector) resp.raise_for_status() return resp.json()
Update an existing detector. Args: detector_id (string): the ID of the detector. detector (object): the detector model object. Will be serialized as JSON. Returns: dictionary of the response (updated detector model).
codesearchnet
def commit(self): commit_response = self._client._firestore_api.commit(self._client._database_string, self._write_pbs, transaction=None, metadata=self._client._rpc_metadata) self._write_pbs = [] self.write_results = results = list(commit_response.write_results) self.commit_time = commit_response.commit_...
Commit the changes accumulated in this batch. Returns: List[google.cloud.proto.firestore.v1beta1.\ write_pb2.WriteResult, ...]: The write results corresponding to the changes committed, returned in the same order as the changes were applied to this batch. A write result contains an ``update_time`` field.
codesearchnet
def _create_mirrored_tpu_replicated_variables(**kwargs): initial_value = kwargs['initial_value'] with maybe_init_scope(): initial_value = initial_value() if callable(initial_value) else initial_value mirrored_replicated_var_list = [] for replica_id in range(num_replicas): replicated_var_...
Returns a list of `TPUReplicatedVariable`s. The list consists of `num_replicas` `TPUReplicatedVariable`s and can be used to initialize a `TPUMirroredVariable`. Each `TPUReplicatedVariable` contains a list of `tf.Variable`s which are replicated to `num_cores_per_replica` logical cores to enable XLA SPMD compilation. A...
github-repos
def start_entry(self, target, var_id): self.in_progress = ConfigEntry(target, var_id, b'') if self.data_size - self.data_index < self.in_progress.data_space(): return Error.DESTINATION_BUFFER_TOO_SMALL self.in_progress.data += struct.pack("<H", var_id) self.data_i...
Begin a new config database entry. If there is a current entry in progress, it is aborted but the data was already committed to persistent storage so that space is wasted. Args: target (SlotIdentifer): The target slot for this config variable. var_id (int): The config variable ID Returns: int: An error code from the...
juraj-google-style
def _construct_location_to_filter_list(match_query): location_to_filters = {} for match_traversal in match_query.match_traversals: for match_step in match_traversal: current_filter = match_step.where_block if current_filter is not None: current...
Return a dict mapping location -> list of filters applied at that location. Args: match_query: MatchQuery object from which to extract location -> filters dict Returns: dict mapping each location in match_query to a list of Filter objects applied at that location
juraj-google-style
def local_conv1d(inputs, kernel, kernel_size, strides, data_format=None): output_shape = (kernel.shape[0],) return local_conv(inputs, kernel, kernel_size, strides, output_shape, data_format)
Apply 1D conv with un-shared weights. Args: inputs: 3D tensor with shape: (batch_size, steps, input_dim) if data_format is "channels_last" or (batch_size, input_dim, steps) if data_format is "channels_first". kernel: the unshared weight for convolution, with shape (output_length, feature_dim, filters). kernel_size: a ...
github-repos
def sort_elements_by_child_values(obj_pyxb, child_name_list): obj_pyxb.sort(key=(lambda x: [get_auto(getattr(x, n)) for n in child_name_list]))
In-place sort simple or complex elements in a PyXB object by values they contain in child elements. Args: obj_pyxb: PyXB object child_name_list: list of str List of element names that are direct children of the PyXB object.
codesearchnet
def Lock(fd, path, blocking): operation = (fcntl.LOCK_EX if blocking else (fcntl.LOCK_EX | fcntl.LOCK_NB)) try: fcntl.flock(fd, operation) except IOError as e: if (e.errno == errno.EWOULDBLOCK): raise IOError(('Exception locking %s. File already locked.' % path)) else: ...
Lock the provided file descriptor. Args: fd: int, the file descriptor of the file to lock. path: string, the name of the file to lock. blocking: bool, whether the function should return immediately. Raises: IOError, raised from flock while attempting to lock a file.
codesearchnet
def get_excel_workbook(api_data, result_info_key, identifier_keys): cleaned_data = [] for item_data in api_data: result_info = item_data.pop(result_info_key, {}) cleaned_item_data = {} if 'meta' in item_data: meta = item_data.pop('meta') cleaned_item_data...
Generates an Excel workbook object given api_data returned by the Analytics API Args: api_data: Analytics API data as a list of dicts (one per identifier) result_info_key: the key in api_data dicts that contains the data results identifier_keys: the list of keys used as requested identifiers (address, zipcode, block_i...
juraj-google-style
def key_periods(ciphertext, max_key_period): if (max_key_period <= 0): raise ValueError('max_key_period must be a positive integer') key_scores = [] for period in range(1, (min(max_key_period, len(ciphertext)) + 1)): score = abs((ENGLISH_IC - index_of_coincidence(*split_columns(ciphertext, p...
Rank all key periods for ``ciphertext`` up to and including ``max_key_period`` Example: >>> key_periods(ciphertext, 30) [2, 4, 8, 3, ...] Args: ciphertext (str): The text to analyze max_key_period (int): The maximum period the key could be Returns: Sorted list of keys Raises: ValueError: If max_key_period is less t...
codesearchnet
def pull(self, platform=None): (repository, _) = parse_repository_tag(self.image_name) return self.collection.pull(repository, tag=self.id, platform=platform)
Pull the image digest. Args: platform (str): The platform to pull the image for. Default: ``None`` Returns: (:py:class:`Image`): A reference to the pulled image.
codesearchnet
def read(self, filename, encoding=None): with open(filename, encoding=encoding) as fp: self._read(fp, filename) self._filename = os.path.abspath(filename)
Read and parse a filename. Args: filename (str): path to file encoding (str): encoding of file, default None
codesearchnet
def mean(x, axis=None, keepdims=False): if any_symbolic_tensors((x,)): return Mean(axis=axis, keepdims=keepdims).symbolic_call(x) return backend.numpy.mean(x, axis=axis, keepdims=keepdims)
Compute the arithmetic mean along the specified axes. Args: x: Input tensor. axis: Axis or axes along which the means are computed. The default is to compute the mean of the flattened tensor. keepdims: If this is set to `True`, the axes which are reduced are left in the result as dimensions with size one. Returns: Ou...
github-repos
def scheduled_sample_count(ground_truth_x, generated_x, batch_size, scheduled_sample_var): num_ground_truth = scheduled_sample_var idx = tf.random_shuffle(tf.range(batch_size)) ground_truth_idx = tf.gather(idx, tf.range(num_ground_truth)) generated_idx = tf.gather(idx, tf.range(num_ground_truth, batch_s...
Sample batch with specified mix of groundtruth and generated data points. Args: ground_truth_x: tensor of ground-truth data points. generated_x: tensor of generated data points. batch_size: batch size scheduled_sample_var: number of ground-truth examples to include in batch. Returns: New batch with num_ground_truth sa...
codesearchnet
def penalty_satisfaction(response, bqm): record = response.record label_dict = response.variables.index if (len(bqm.info['reduction']) == 0): return np.array(([1] * len(record.sample))) penalty_vector = np.prod([((record.sample[(:, label_dict[qi])] * record.sample[(:, label_dict[qj])]) == record...
Creates a penalty satisfaction list Given a sampleSet and a bqm object, will create a binary list informing whether the penalties introduced during degree reduction are satisfied for each sample in sampleSet Args: response (:obj:`.SampleSet`): Samples corresponding to provided bqm bqm (:obj:`.BinaryQuadraticModel`):...
codesearchnet
def _FormatDescription(self, event): date_time_string = timelib.Timestamp.CopyToIsoFormat( event.timestamp, timezone=self._output_mediator.timezone) timestamp_description = event.timestamp_desc or 'UNKNOWN' message, _ = self._output_mediator.GetFormattedMessages(event) if message is None: ...
Formats the description. Args: event (EventObject): event. Returns: str: formatted description field.
juraj-google-style
def add_layer(self, label, change_layer=True): self.layer_stack.insert((self.last_layer() + 1), label) if change_layer: self.set_current_layer(self.last_layer()) return None
Add new mesh layer to the end of the stack Args: label (str): new label for the mesh layer change_layer (bool): change to the newly created layer
codesearchnet
def plugins(self): if (not self.loaded): self.load_modules() return get_plugins()[self.group]._filter(blacklist=self.blacklist, newest_only=True, type_filter=self.type_filter)
Newest version of all plugins in the group filtered by ``blacklist`` Returns: dict: Nested dictionary of plugins accessible through dot-notation. Plugins are returned in a nested dictionary, but can also be accessed through dot-notion. Just as when accessing an undefined dictionary key with index-notation, a :py:exc:...
codesearchnet
def export_vms(self, vms_names=None, standalone=False, export_dir='.', compress=False, init_file_name='LagoInitFile', out_format=YAMLOutFormatPlugin(), collect_only=False, with_threads=True): return self.virt_env.export_vms(vms_names, standalone, export_dir, compress, init_file_name, out_format, collect_only, with_...
Export vm images disks and init file. The exported images and init file can be used to recreate the environment. Args: vms_names(list of str): Names of the vms to export, if None export all the vms in the env (default=None) standalone(bool): If false, export a layered image (default=False) export_dir(str): Dir to plac...
codesearchnet
def get_version(here_path, default_version=DEFAULT_VERSION): if ('site-packages' in here_path): return _version_from_file(here_path) if os.environ.get('TRAVIS_TAG'): if (not TEST_MODE): return os.environ.get('TRAVIS_TAG').replace('v', '') else: warnings.warn('Trav...
tries to resolve version number Args: here_path (str): path to project local dir default_version (str): what version to return if all else fails Returns: str: semantic_version information for library
codesearchnet