Download a1_bootstrap/bootstrap_summary.json from Mohith202/7ROI_outputs: direct link, hf CLI and curl.
- Browser
- Download file 8.7 kB
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https://huggingface.co/datasets/Mohith202/7ROI_outputs/resolve/main/a1_bootstrap/bootstrap_summary.json
- Command line
-
hf download hf://datasets/Mohith202/7ROI_outputs/a1_bootstrap/bootstrap_summary.json
-
curl -L -o bootstrap_summary.json https://huggingface.co/datasets/Mohith202/7ROI_outputs/resolve/main/a1_bootstrap/bootstrap_summary.json
8.7 kB
| { | |
| "alignment_config": { | |
| "alignment_subjects": [], | |
| "hrf_model": "glover", | |
| "overwrite": true, | |
| "run_alignment": true, | |
| "trim_end_tr": 0, | |
| "trim_start_tr": 0 | |
| }, | |
| "alignment_qc": { | |
| "alignment_subjects": [ | |
| "sub-01", | |
| "sub-02", | |
| "sub-04", | |
| "sub-05", | |
| "sub-06", | |
| "sub-07", | |
| "sub-08", | |
| "sub-09", | |
| "sub-10", | |
| "sub-11", | |
| "sub-12", | |
| "sub-13", | |
| "sub-14", | |
| "sub-15", | |
| "sub-16", | |
| "sub-17", | |
| "sub-19", | |
| "sub-20", | |
| "sub-21", | |
| "sub-22", | |
| "sub-23", | |
| "sub-24", | |
| "sub-25", | |
| "sub-26" | |
| ], | |
| "analysis_mask_path": "/home/mohith/ds005345/outputs/a1_bootstrap/analysis_mask.nii.gz", | |
| "bold_n_tr_max": 608, | |
| "bold_n_tr_min": 608, | |
| "bold_n_voxels_max": 509764, | |
| "bold_n_voxels_min": 509764, | |
| "hrf_model": "glover", | |
| "n_bold_rows": 96, | |
| "n_regressor_rows": 316, | |
| "regressor_n_features_max": 4096, | |
| "regressor_n_features_min": 2048, | |
| "regressor_n_tr_max": 608, | |
| "regressor_n_tr_min": 608, | |
| "trim_end_tr": 0, | |
| "trim_start_tr": 0 | |
| }, | |
| "allowed_runs": [ | |
| 1, | |
| 2, | |
| 3, | |
| 4 | |
| ], | |
| "analysis_mask_qc": { | |
| "intersection_voxels": 548786, | |
| "left_hemisphere_voxels": 251575, | |
| "n_manifest_rows": 96, | |
| "n_resampled_run_masks": 0, | |
| "n_run_masks": 96, | |
| "reference_orientation": "RAS", | |
| "reference_shape": [ | |
| 97, | |
| 115, | |
| 97 | |
| ], | |
| "right_hemisphere_voxels": 251575, | |
| "run_mask_method": "first_volume_nonzero", | |
| "run_mask_voxels_max": 933608, | |
| "run_mask_voxels_min": 797667, | |
| "symmetric_mask_voxels": 509764 | |
| }, | |
| "annotation_dir": "/home/mohith/ds005345/data/annotation", | |
| "annotation_qc": { | |
| "annotation_dir": "/home/mohith/ds005345/data/annotation", | |
| "duration_s_max": 4.279999999999973, | |
| "duration_s_min": 0.05999999999994543, | |
| "enable_mixed_fallback": true, | |
| "n_manifest_rows": 96, | |
| "n_run_templates": 4, | |
| "n_unified_rows": 156816, | |
| "run_word_counts": { | |
| "1": 1753, | |
| "2": 1514, | |
| "3": 1753, | |
| "4": 1514 | |
| }, | |
| "source_resolution": [ | |
| { | |
| "annotation_used_mixed_fallback": false, | |
| "provenance": "fixed_run_source:single_female_word_information.csv", | |
| "run": 1, | |
| "source_word_table": "single_female_word_information.csv" | |
| }, | |
| { | |
| "annotation_used_mixed_fallback": false, | |
| "provenance": "fixed_run_source:single_male_word_information.csv", | |
| "run": 2, | |
| "source_word_table": "single_male_word_information.csv" | |
| }, | |
| { | |
| "annotation_used_mixed_fallback": true, | |
| "provenance": "mixed_run_fallback_source:single_female_word_information.csv", | |
| "run": 3, | |
| "source_word_table": "single_female_word_information.csv" | |
| }, | |
| { | |
| "annotation_used_mixed_fallback": true, | |
| "provenance": "mixed_run_fallback_source:single_male_word_information.csv", | |
| "run": 4, | |
| "source_word_table": "single_male_word_information.csv" | |
| } | |
| ], | |
| "time_scale_seconds": 0.01 | |
| }, | |
| "artifacts": { | |
| "accepted_manifest": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/accepted_manifest.csv", | |
| "alignment_bold_summary": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/alignment_bold_summary.csv", | |
| "alignment_output_dir": "/home/mohith/ds005345/outputs/a1_bootstrap/alignment_inputs", | |
| "alignment_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/alignment_qc.json", | |
| "alignment_regressor_summary": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/alignment_regressor_summary.csv", | |
| "analysis_mask": "/home/mohith/ds005345/outputs/a1_bootstrap/analysis_mask.nii.gz", | |
| "analysis_mask_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/analysis_mask_qc.json", | |
| "annotation_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/annotation_qc.json", | |
| "annotation_source_resolution": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/annotation_source_resolution.csv", | |
| "core_roi_coverage": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/core_roi_coverage.csv", | |
| "core_roi_failures": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/core_roi_failures.csv", | |
| "core_roi_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/core_roi_qc.json", | |
| "csv_output_dir": "/home/mohith/ds005345/outputs/a1_bootstrap/csv", | |
| "feature_output_dir": "/home/mohith/ds005345/outputs/a1_bootstrap/features", | |
| "feature_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/feature_extraction_qc.json", | |
| "feature_summary": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/feature_extraction_summary.csv", | |
| "manifest_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/manifest_qc.json", | |
| "protocol_b_within_run": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/protocol_b_within_run_splits.csv", | |
| "protocol_b_within_run_skipped": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/protocol_b_within_run_skipped.csv", | |
| "protocol_c_cross_subject": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/protocol_c_cross_subject_folds.csv", | |
| "rejected_manifest": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/rejected_manifest.csv", | |
| "run_event_templates": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/run_event_templates.csv", | |
| "run_mask_qc": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/run_mask_qc.csv", | |
| "unified_word_events": "/home/mohith/ds005345/outputs/a1_bootstrap/csv/unified_word_events.csv" | |
| }, | |
| "base_dir": "/home/mohith/ds005345", | |
| "core_roi_config": { | |
| "allow_core_roi_failures": false, | |
| "min_voxels_required": 20 | |
| }, | |
| "core_roi_gate_passed": true, | |
| "core_roi_qc": { | |
| "core_roi_pre_mask_voxels": { | |
| "AG_TPJ": 448, | |
| "BA44": 448, | |
| "BA45": 424, | |
| "BA47": 648, | |
| "TP": 472, | |
| "aSTS": 448, | |
| "pSTS": 552 | |
| }, | |
| "min_voxels_required": 20, | |
| "n_coverage_rows": 672, | |
| "n_fail_rows": 0, | |
| "n_subject_run_failures": 0, | |
| "retention_ratio_max": 1.0, | |
| "retention_ratio_min": 1.0 | |
| }, | |
| "cross_subject_protocol": { | |
| "canonical_runs": [ | |
| 1, | |
| 2, | |
| 3, | |
| 4 | |
| ], | |
| "condition_labels": [ | |
| "single_female", | |
| "single_male", | |
| "mixed_female", | |
| "mixed_male" | |
| ], | |
| "participant_run_info_path": "/home/mohith/ds005345/code/assets/participant_run_info.json", | |
| "test_subject_count": 4 | |
| }, | |
| "csv_output_dir": "/home/mohith/ds005345/outputs/a1_bootstrap/csv", | |
| "data_dir": "/home/mohith/ds005345/data", | |
| "deep_nifti_integrity_check": false, | |
| "derivatives_dir": "/home/mohith/ds005345/derivatives", | |
| "excluded_subjects": [ | |
| "sub-03", | |
| "sub-18" | |
| ], | |
| "feature_extraction_config": { | |
| "device": "auto", | |
| "dry_run": false, | |
| "dry_run_hidden_dim": 128, | |
| "dry_run_n_layers": 3, | |
| "layer_indices": null, | |
| "local_files_only": false, | |
| "max_words_per_chunk": 256, | |
| "overwrite": true, | |
| "run_feature_extraction": true | |
| }, | |
| "feature_qc": { | |
| "dry_run": false, | |
| "hidden_dim_max": 4096, | |
| "hidden_dim_min": 2048, | |
| "max_words_per_chunk": 256, | |
| "n_layers_max": 33, | |
| "n_layers_min": 17, | |
| "n_model_run_rows": 12, | |
| "n_models": 3, | |
| "unmatched_words_total": 0 | |
| }, | |
| "manifest_qc": { | |
| "allowed_runs": [ | |
| 1, | |
| 2, | |
| 3, | |
| 4 | |
| ], | |
| "deep_nifti_integrity_check": false, | |
| "excluded_subjects": [ | |
| "sub-03", | |
| "sub-18" | |
| ], | |
| "mixed_fallback_enabled": true, | |
| "n_accepted": 96, | |
| "n_candidates": 141, | |
| "n_rejected": 45, | |
| "n_unique_subjects": 24, | |
| "n_volumes_max": 608, | |
| "n_volumes_min": 608, | |
| "reject_counts": { | |
| "excluded_subject": 8, | |
| "filename_pattern_mismatch": 28, | |
| "folder_filename_subject_mismatch": 8, | |
| "run_not_in_whitelist": 1 | |
| }, | |
| "tr_seconds_max": 1.0, | |
| "tr_seconds_min": 1.0, | |
| "tr_seconds_unique": [ | |
| 1.0 | |
| ] | |
| }, | |
| "mixed_fallback_enabled": true, | |
| "model_selection": { | |
| "config_path": "/home/mohith/ds005345/code/config/model_profiles.json", | |
| "description": "Current A1 text model set (Qwen3 1.7B + Llama 3.2 1B + LLaDA 8B Instruct)", | |
| "profile": "current", | |
| "source": "model_config" | |
| }, | |
| "models_locked": [ | |
| "Qwen/Qwen3-1.7B", | |
| "meta-llama/Llama-3.2-1B", | |
| "GSAI-ML/LLaDA-8B-Instruct" | |
| ], | |
| "output_dir": "/home/mohith/ds005345/outputs/a1_bootstrap", | |
| "roi_mask_dir": "/home/mohith/ds005345/code/assets/roi_masks", | |
| "run_mask_config": { | |
| "epsilon": 1e-06, | |
| "method": "first_volume_nonzero" | |
| }, | |
| "split_summary": { | |
| "n_manifest_rows": 96, | |
| "n_protocol_b_skipped": 0, | |
| "n_protocol_b_splits": 96, | |
| "n_protocol_c_folds": 24, | |
| "n_subjects_manifest": 24 | |
| }, | |
| "time_scale_seconds": 0.01, | |
| "within_protocol": { | |
| "gap_tr": 8, | |
| "min_test_volumes": 20, | |
| "min_train_volumes": 40, | |
| "test_fraction": 0.2 | |
| } | |
| } |