| { |
| "dataset": "DeepSTARR enhancer sequences", |
| "zenodo_record": 5502060, |
| "source_url": "https://zenodo.org/records/5502060", |
| "file_md5": { |
| "Sequences_Train.fa": "fe474a31c23db2daf7dc4d1fc49a8e5a", |
| "Sequences_Val.fa": "9d1a0e5c9228aa033378af93074109e6", |
| "Sequences_Test.fa": "c2d831a6e2cfb9345fa5e52de76bb453", |
| "Sequences_activity_Train.txt": "4e65afa021fd426c74dbf24c31b8bbf9", |
| "Sequences_activity_Val.txt": "5f30e863b2239e4f9ade6e7b81b3ff3c", |
| "Sequences_activity_Test.txt": "011690ca80cf967d56fefd0c1386419f", |
| "DeepSTARR.model.json": "9b796f79441e53dc75dd79b911fff872", |
| "DeepSTARR.model.h5": "7e53a9351b2520a4713a5ffdb5f1566c" |
| }, |
| "alphabet": "ACGT", |
| "sequence_length": 249, |
| "split_sizes": { |
| "train": 402278, |
| "validation": 40570, |
| "test": 41186 |
| }, |
| "ambiguous_sequences_removed": { |
| "train": 18, |
| "validation": 0, |
| "test": 0 |
| }, |
| "activity_columns": [ |
| "Dev_log2_enrichment", |
| "Hk_log2_enrichment", |
| "Dev_log2_enrichment_scaled", |
| "Hk_log2_enrichment_scaled", |
| "Dev_log2_enrichment_quantile_normalized", |
| "Hk_log2_enrichment_quantile_normalized" |
| ], |
| "generative_training": "official train split only", |
| "official_activity_predictor": "Keras weights ported exactly to PyTorch at evaluation" |
| } |
|
|
