Add provisional notice
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README.md
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---
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pretty_name: Provisional ligand–pocket collection
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---
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# Provisional — do not use
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This dataset is provisional and **should not be used by anyone at this point**.
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Licensing for one of the source datasets remains unresolved. No dataset license
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is assigned by this repository. Included source-license notes are provenance,
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not a grant of rights to the combined collection.
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This is the final canonical heavy-atom collection and the exact packed runtime
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cache used by FSBFPocket. Preparation/training/sampling code and definitions are
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in https://github.com/MurrellGroup/FSBFPocket . The corrected annotation schema is
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`pli-interaction-evidence-v2-all-scopes`: ligand–ligand, ligand–protein, and
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protein–protein interactions, symmetric order-invariant ring-plane tests, and
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explicit uncertainty. These are geometric annotations, not measured bonds.
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The collection contains 1,240,225 records: 597,749 GEOM-Drugs conformers,
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500,000 ProFSADB fragments, 94,381 BindingNet docked examples and 48,095 PLINDER
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examples including peptides. The manifest distinguishes origins and ligand
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classes. Seven confirmed PLINDER defects are retained for provenance but
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excluded by the training admission policy in the code.
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Use the GitHub download command to verify and extract the artifacts.
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The full portable collection includes provenance, original structures, primary
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heavy-atom arrays and rich annotation evidence. The packed cache contains all
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inputs and split assignments needed for training; original source downloads
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are not required to train. Older annotation files inside the portable archive
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are provenance only: the reader and training use the corrected v2 annotations.
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