Download 10_tools/validate_package.py from NeeyuHuynh/chest-bench-example: direct link, hf CLI and curl.
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https://huggingface.co/datasets/NeeyuHuynh/chest-bench-example/resolve/main/10_tools/validate_package.py
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3.08 kB
| #!/usr/bin/env python3 | |
| from pathlib import Path | |
| import json, hashlib, sys | |
| ROOT = Path(__file__).resolve().parents[1] | |
| def sha256(p): | |
| h=hashlib.sha256() | |
| with open(p,"rb") as f: | |
| for c in iter(lambda:f.read(1024*1024),b""): h.update(c) | |
| return h.hexdigest() | |
| errors=[] | |
| # JSON/JSONL syntax | |
| for p in ROOT.rglob("*.jsonl"): | |
| with open(p,encoding="utf-8") as f: | |
| for i,line in enumerate(f,1): | |
| if not line.strip(): continue | |
| try: json.loads(line) | |
| except Exception as e: errors.append(f"{p.relative_to(ROOT)}:{i}: {e}") | |
| for p in ROOT.rglob("*.json"): | |
| try: json.loads(p.read_text(encoding="utf-8")) | |
| except Exception as e: errors.append(f"{p.relative_to(ROOT)}: {e}") | |
| # raw checksums remain immutable | |
| chk=ROOT/"00_raw/checksums.sha256" | |
| for line in chk.read_text().splitlines(): | |
| expected, rel=line.split(" ",1) | |
| p=ROOT/rel | |
| if not p.exists(): errors.append(f"missing {rel}") | |
| elif sha256(p)!=expected: errors.append(f"hash mismatch {rel}") | |
| # expected cases | |
| case_map=(ROOT/"01_canonical/case_map.csv").read_text(encoding="utf-8") | |
| for i in range(1,5): | |
| cid=f"case_{i:04d}" | |
| if cid not in case_map: errors.append(f"missing case map entry {cid}") | |
| # QA <-> evidence contract cross references | |
| qas=[json.loads(x) for x in (ROOT/"03_semantics/qa_pairs.jsonl").read_text(encoding="utf-8").splitlines() if x.strip()] | |
| contracts=[json.loads(x) for x in (ROOT/"12_evidence_contract/evidence_contracts.jsonl").read_text(encoding="utf-8").splitlines() if x.strip()] | |
| contract_by_id={x['evidence_contract_id']:x for x in contracts} | |
| qa_ids={x['qa_id'] for x in qas} | |
| for q in qas: | |
| ec=q.get('evidence_contract_id') | |
| if not ec or ec not in contract_by_id: errors.append(f"QA {q['qa_id']} missing valid evidence contract") | |
| for c in contracts: | |
| if c['qa_id'] not in qa_ids: errors.append(f"orphan evidence contract {c['evidence_contract_id']}") | |
| # every QA gets exactly the five planned conditions | |
| perts=[json.loads(x) for x in (ROOT/"13_perturbations/perturbation_manifest.jsonl").read_text(encoding="utf-8").splitlines() if x.strip()] | |
| expected={'correct_image','question_only','same_modality_hard_mismatch','wrong_organ_or_modality','blank_or_target_occluded'} | |
| for qid in qa_ids: | |
| got={x['condition'] for x in perts if x['qa_id']==qid} | |
| if got != expected: errors.append(f"{qid} perturbation conditions mismatch: {sorted(got)}") | |
| # empirical fields must remain unset until a real run exists | |
| for c in contracts: | |
| em=c['empirical_measurement'] | |
| if em.get('status')=='not_run': | |
| leaked=[k for k,v in em.items() if k!='status' and v is not None] | |
| if leaked: errors.append(f"{c['qa_id']} has audit values despite status not_run: {leaked}") | |
| if (ROOT/'VERSION').read_text().strip() != '0.2.0': errors.append('VERSION is not 0.2.0') | |
| if errors: | |
| print("VALIDATION FAILED") | |
| print("\n".join(errors)) | |
| sys.exit(1) | |
| print("VALIDATION PASS") | |
| print(f"{len(qas)} QA items linked to {len(contracts)} evidence contracts; five-condition perturbation plans verified; raw hashes unchanged.") | |