JonathonDilworth commited on
Commit
35b3f83
·
verified ·
1 Parent(s): 9eb2ff7

removed unnecessary 'standard vs repaired' ranking candidates distinction; submit using the standard files, as provided

Browse files
NCIT-DOID/repaired/local.test.cands.tsv DELETED
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NCIT-DOID/repaired/local.train.cands.tsv DELETED
@@ -1,3 +0,0 @@
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NCIT-DOID/repaired/local.valid.cands.tsv DELETED
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README.md CHANGED
@@ -23,7 +23,7 @@ The public task data for the **[OAEI](https://oaei.ontologymatching.org/) Bio-ML
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  ## Tasks
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  - **Global equivalence alignment** — submit an OAEI Alignment RDF/XML or a TSV per pair. Scored (organiser-side) with repaired coherence-aware P/R/F1 (headline) + standard P/R/F1 + Global Coherence. A public `refs_equiv/train.tsv` of positive mappings is provided per pair.
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- - **Local equivalence ranking** — rank the 100-candidate pool per query. Scored with MRR + Hits@{1,5,10}.
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  ## Layout (per pair `NCIT-DOID/`, `SNOMED-FMA/`, `SNOMED-NCIT/`)
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@@ -31,7 +31,6 @@ The public task data for the **[OAEI](https://oaei.ontologymatching.org/) Bio-ML
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  |---|---|
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  | `local.{train,valid,test}.cands.tsv` | Subtrack 2 ranking pools (100 cands/query; test is gold-stripped) |
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  | `refs_equiv/train.tsv` | Subtrack 1 public train positives (`SrcEntity, TgtEntity, Score`) |
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- | `repaired/` | the same set against the coherence-repaired reference |
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  | `evaluation/` | `sample_submission.tsv`, `submission_schema.json` (shared) |
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  | `SHA256SUMS.txt`, `release_manifest.json`, `license_manifest.json`, `resolved_versions.json` | integrity + provenance |
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  ## Tasks
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  - **Global equivalence alignment** — submit an OAEI Alignment RDF/XML or a TSV per pair. Scored (organiser-side) with repaired coherence-aware P/R/F1 (headline) + standard P/R/F1 + Global Coherence. A public `refs_equiv/train.tsv` of positive mappings is provided per pair.
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+ - **Local equivalence ranking** — rank the 100-candidate pool per query. Scored with MRR + Hits@{1,5,10} against the **standard** (unrepaired) reference — coherence repair applies to the global task only.
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  ## Layout (per pair `NCIT-DOID/`, `SNOMED-FMA/`, `SNOMED-NCIT/`)
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  |---|---|
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  | `local.{train,valid,test}.cands.tsv` | Subtrack 2 ranking pools (100 cands/query; test is gold-stripped) |
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  | `refs_equiv/train.tsv` | Subtrack 1 public train positives (`SrcEntity, TgtEntity, Score`) |
 
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  | `evaluation/` | `sample_submission.tsv`, `submission_schema.json` (shared) |
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  | `SHA256SUMS.txt`, `release_manifest.json`, `license_manifest.json`, `resolved_versions.json` | integrity + provenance |
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The diff for this file is too large to render. See raw diff
 
SNOMED-FMA/repaired/local.valid.cands.tsv DELETED
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