removed unnecessary 'standard vs repaired' ranking candidates distinction; submit using the standard files, as provided
Browse files- NCIT-DOID/repaired/local.test.cands.tsv +0 -0
- NCIT-DOID/repaired/local.train.cands.tsv +0 -3
- NCIT-DOID/repaired/local.valid.cands.tsv +0 -0
- README.md +1 -2
- SHA256SUMS.txt +0 -9
- SNOMED-FMA/repaired/local.test.cands.tsv +0 -0
- SNOMED-FMA/repaired/local.train.cands.tsv +0 -0
- SNOMED-FMA/repaired/local.valid.cands.tsv +0 -0
- SNOMED-NCIT/repaired/local.test.cands.tsv +0 -3
- SNOMED-NCIT/repaired/local.train.cands.tsv +0 -3
- SNOMED-NCIT/repaired/local.valid.cands.tsv +0 -3
- release_manifest.json +0 -9
NCIT-DOID/repaired/local.test.cands.tsv
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NCIT-DOID/repaired/local.train.cands.tsv
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version https://git-lfs.github.com/spec/v1
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NCIT-DOID/repaired/local.valid.cands.tsv
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README.md
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@@ -23,7 +23,7 @@ The public task data for the **[OAEI](https://oaei.ontologymatching.org/) Bio-ML
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## Tasks
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- **Global equivalence alignment** — submit an OAEI Alignment RDF/XML or a TSV per pair. Scored (organiser-side) with repaired coherence-aware P/R/F1 (headline) + standard P/R/F1 + Global Coherence. A public `refs_equiv/train.tsv` of positive mappings is provided per pair.
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- **Local equivalence ranking** — rank the 100-candidate pool per query. Scored with MRR + Hits@{1,5,10}.
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## Layout (per pair `NCIT-DOID/`, `SNOMED-FMA/`, `SNOMED-NCIT/`)
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@@ -31,7 +31,6 @@ The public task data for the **[OAEI](https://oaei.ontologymatching.org/) Bio-ML
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|---|---|
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| `local.{train,valid,test}.cands.tsv` | Subtrack 2 ranking pools (100 cands/query; test is gold-stripped) |
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| `refs_equiv/train.tsv` | Subtrack 1 public train positives (`SrcEntity, TgtEntity, Score`) |
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-
| `repaired/` | the same set against the coherence-repaired reference |
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| `evaluation/` | `sample_submission.tsv`, `submission_schema.json` (shared) |
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| `SHA256SUMS.txt`, `release_manifest.json`, `license_manifest.json`, `resolved_versions.json` | integrity + provenance |
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## Tasks
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| 24 |
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- **Global equivalence alignment** — submit an OAEI Alignment RDF/XML or a TSV per pair. Scored (organiser-side) with repaired coherence-aware P/R/F1 (headline) + standard P/R/F1 + Global Coherence. A public `refs_equiv/train.tsv` of positive mappings is provided per pair.
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+
- **Local equivalence ranking** — rank the 100-candidate pool per query. Scored with MRR + Hits@{1,5,10} against the **standard** (unrepaired) reference — coherence repair applies to the global task only.
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## Layout (per pair `NCIT-DOID/`, `SNOMED-FMA/`, `SNOMED-NCIT/`)
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|---|---|
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| `local.{train,valid,test}.cands.tsv` | Subtrack 2 ranking pools (100 cands/query; test is gold-stripped) |
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| `refs_equiv/train.tsv` | Subtrack 1 public train positives (`SrcEntity, TgtEntity, Score`) |
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| `evaluation/` | `sample_submission.tsv`, `submission_schema.json` (shared) |
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| `SHA256SUMS.txt`, `release_manifest.json`, `license_manifest.json`, `resolved_versions.json` | integrity + provenance |
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SHA256SUMS.txt
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@@ -2,24 +2,15 @@
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4f7f3c7950471e26f2eb8351efa7805241c69ce8aa2d4b5aa52c494ab0e42bab ./NCIT-DOID/local.train.cands.tsv
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fbf31148970aa67a9ad30a4dd7c6a863a5689d1d71ab56f8b068cb499d5722c0 ./NCIT-DOID/local.valid.cands.tsv
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6dfd1a415489642eba059326f6fbb4a0e907a79fbbb432461ef678aa4a76a91d ./NCIT-DOID/refs_equiv/train.tsv
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a9befab77c86e0ded284705641226c76023dc34995a87fd55c93e4c839cab3b2 ./NCIT-DOID/repaired/local.test.cands.tsv
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| 6 |
-
16aafb0dacadb1cc15430df6b923533bc5a26e4a833b1681deccb4ed5ecbeec8 ./NCIT-DOID/repaired/local.train.cands.tsv
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-
773a594f15c078e0d71c0e0c3717564031e356ce401e17d09d98208ecc204641 ./NCIT-DOID/repaired/local.valid.cands.tsv
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ae8483617a334d18779e0cede310b3514e1fdd285c0da727b46ac0bb88dcb8bc ./README.md
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3178a515d594a1508f037fd348835a4b9a3a7e26dfc5bd829d22896b78be73d7 ./SNOMED-FMA/local.test.cands.tsv
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e05bfa971e4fc7795cd778fc2b7e8144a9caf67be1727b951a7c55cb28f6ffed ./SNOMED-FMA/local.train.cands.tsv
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5b826af69dd5f93d64dd86cab237049695c6c9c0efc89b212c2b6d6570d136d8 ./SNOMED-FMA/refs_equiv/train.tsv
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-
413b9592d28c4af1ac8d7499f65270859aaf6ae541514bc2a5752b5dc817f743 ./SNOMED-FMA/repaired/local.test.cands.tsv
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| 14 |
-
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-
1af0aaba885b5e6081d57ae5e8b12b5a7d9f16c3cfacee93333893bbe83dcbb5 ./SNOMED-FMA/repaired/local.valid.cands.tsv
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9c1e71c7ee786b7fb919125d82957f886d422abdb56ee932e07c76a2ef2a731b ./SNOMED-NCIT/local.test.cands.tsv
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| 17 |
2a45858161f526a89853f90769634384c2f34020c1c1b12d6fd2bc19e35c0860 ./SNOMED-NCIT/local.train.cands.tsv
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e9404ec88180bccbd146f46654a6628c99622e718a9b645704b50c18f93e5dfc ./SNOMED-NCIT/refs_equiv/train.tsv
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b03514a0ff69a236f257b6f8eabb3df85000242f7f13d0edd95b37a1433a8c85 ./SNOMED-NCIT/repaired/local.test.cands.tsv
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| 21 |
-
cedc4d94eb952c42320a091e7aead1788e176cdfb3410792854e9222ecf8bfc2 ./SNOMED-NCIT/repaired/local.train.cands.tsv
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-
c0240440018e9f8278c76762fcd594c0383ed5f6184487465da80ef8e142a34e ./SNOMED-NCIT/repaired/local.valid.cands.tsv
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bcded5be179d3657aa6a64182fbecfcfc737ac3d2d7bdcfa797b59ba4dfdee17 ./license_manifest.json
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21a529d43b21f7227cc2d3a6f2b3b66cb425e4350f75fdb1ef57d311a226b86a ./ontologies.md
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85febd7e72e82ae954353dd123137072d0da4054694f71d115835d1ce2a1dcef ./release_manifest.json
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4f7f3c7950471e26f2eb8351efa7805241c69ce8aa2d4b5aa52c494ab0e42bab ./NCIT-DOID/local.train.cands.tsv
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fbf31148970aa67a9ad30a4dd7c6a863a5689d1d71ab56f8b068cb499d5722c0 ./NCIT-DOID/local.valid.cands.tsv
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ae8483617a334d18779e0cede310b3514e1fdd285c0da727b46ac0bb88dcb8bc ./README.md
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e05bfa971e4fc7795cd778fc2b7e8144a9caf67be1727b951a7c55cb28f6ffed ./SNOMED-FMA/local.train.cands.tsv
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89014b33c75cfa56511ac57b9f8b254fa6f69adda2affecfd09061206cd423e5 ./SNOMED-FMA/local.valid.cands.tsv
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5b826af69dd5f93d64dd86cab237049695c6c9c0efc89b212c2b6d6570d136d8 ./SNOMED-FMA/refs_equiv/train.tsv
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9c1e71c7ee786b7fb919125d82957f886d422abdb56ee932e07c76a2ef2a731b ./SNOMED-NCIT/local.test.cands.tsv
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e9404ec88180bccbd146f46654a6628c99622e718a9b645704b50c18f93e5dfc ./SNOMED-NCIT/refs_equiv/train.tsv
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bcded5be179d3657aa6a64182fbecfcfc737ac3d2d7bdcfa797b59ba4dfdee17 ./license_manifest.json
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85febd7e72e82ae954353dd123137072d0da4054694f71d115835d1ce2a1dcef ./release_manifest.json
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SNOMED-FMA/repaired/local.test.cands.tsv
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SNOMED-NCIT/repaired/local.test.cands.tsv
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SNOMED-NCIT/repaired/local.train.cands.tsv
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SNOMED-NCIT/repaired/local.valid.cands.tsv
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release_manifest.json
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