File size: 9,462 Bytes
9b90395
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
{
 "format": "oscr-script-manifest/1",
 "repository": "zenodo:15198488",
 "url": "10.5281/zenodo.15198488",
 "host": "zenodo.org",
 "commit": "",
 "license": "CC-BY-4.0",
 "license_confirmed_by": "license of the archive's record",
 "redistribution": "yes",
 "files": [
  {
   "path": "README.md",
   "sha256": "d8c459f9760307a066e49fa0d357905e91118cee6eec0ea1b56cbd4eb8cdfc58",
   "language": "Text",
   "lines": 13,
   "truncated": false,
   "block": 9,
   "row": 14521
  },
  {
   "path": "deprecated-code.zip/deprecated-code/beta_tuning.py",
   "sha256": "acca7bc7e8f0428a68ad71aa81cf3dec1d62874e276e2c40c71c416672f62584",
   "language": "Python",
   "lines": 27,
   "truncated": false,
   "block": 9,
   "row": 6864
  },
  {
   "path": "deprecated-code.zip/deprecated-code/cloning.py",
   "sha256": "34117caa51710a54b6b6e16b3ce6da4e3e329e09cc6b3650125d86c2deaea21b",
   "language": "Python",
   "lines": 55,
   "truncated": false,
   "block": 9,
   "row": 8199
  },
  {
   "path": "deprecated-code.zip/deprecated-code/count_partition_cells.py",
   "sha256": "2043651f946557ac62e9760d3e0016a10584dbdba76fc3a8801b40590bad2585",
   "language": "Python",
   "lines": 138,
   "truncated": false,
   "block": 9,
   "row": 9379
  },
  {
   "path": "deprecated-code.zip/deprecated-code/cylinder_test.py",
   "sha256": "5b51e09c9a8e388718d8431a27f31651cb9b0d5b9e263b75bcc8808f22e6c9ea",
   "language": "Python",
   "lines": 116,
   "truncated": false,
   "block": 9,
   "row": 8794
  },
  {
   "path": "deprecated-code.zip/deprecated-code/extract_rt_pca.py",
   "sha256": "5c7415736514beb7d18e8afd9ad47a133d139a0a217688a7b216bd7df09ae916",
   "language": "Python",
   "lines": 13,
   "truncated": false,
   "block": 9,
   "row": 6590
  },
  {
   "path": "deprecated-code.zip/deprecated-code/morphology_placement/callosum_targeting.py",
   "sha256": "9299ea07ef911b28385df6834e44f51dc64fb210c0d5771792dd5f3bf176b2f0",
   "language": "Python",
   "lines": 116,
   "truncated": false,
   "block": 9,
   "row": 9120
  },
  {
   "path": "deprecated-code.zip/deprecated-code/morphology_placement/neuron_scraper.py",
   "sha256": "d9972a5a445d90fc089cf5ae18a520562f6c3abead3267297e86a03968e845b0",
   "language": "Python",
   "lines": 27,
   "truncated": false,
   "block": 9,
   "row": 6711
  },
  {
   "path": "deprecated-code.zip/deprecated-code/morphology_placement/plot_morphology.py",
   "sha256": "990947727ab8b43196c84a3d0689fb7356e82fa84e06adbab9090b85366cfaaf",
   "language": "Python",
   "lines": 25,
   "truncated": false,
   "block": 9,
   "row": 6753
  },
  {
   "path": "deprecated-code.zip/deprecated-code/morphology_placement/to_data_arrays.py",
   "sha256": "99703fa563c79d54987312a4e9678812e7f77183c3e50c52bb6d27b84da6d4bd",
   "language": "Python",
   "lines": 9,
   "truncated": false,
   "block": 9,
   "row": 6469
  },
  {
   "path": "deprecated-code.zip/deprecated-code/rt_conn_debug.py",
   "sha256": "52398aa856dfabef974ea537586a7ab09323b0c04060cf190d38e15303c550e9",
   "language": "Python",
   "lines": 136,
   "truncated": false,
   "block": 9,
   "row": 9174
  },
  {
   "path": "offline-scripts.zip/fill_connections.py",
   "sha256": "5d962b227a5599747205eee258d2740be27cbd3f686c6fc15c009fba7bab3d9e",
   "language": "Python",
   "lines": 85,
   "truncated": false,
   "block": 9,
   "row": 8760
  },
  {
   "path": "offline-scripts.zip/store_scaffold_info.py",
   "sha256": "4acd9ee96971b9bdc125709771805dac81961d802856384e56a694cadaa387bf",
   "language": "Python",
   "lines": 78,
   "truncated": false,
   "block": 9,
   "row": 8656
  },
  {
   "path": "offline-scripts.zip/update_rtrt_connections.py",
   "sha256": "5fab12693178c3eeae2c1540ee38d217ff3fdd197ee2db5dcef2296c051bc418",
   "language": "Python",
   "lines": 262,
   "truncated": false,
   "block": 9,
   "row": 10853
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/neuron_mesh_utils.py",
   "sha256": "6b301c5d6650c808c6b3e0b4da8e45b1c7b1b2a006214bdb16c9242644de684b",
   "language": "Python",
   "lines": 156,
   "truncated": false,
   "block": 9,
   "row": 9659
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/plot_connectivity.py",
   "sha256": "76efe8c836764a09639c92bf4b983467d9b1b7b6bb5f098362c604c93b93de48",
   "language": "Python",
   "lines": 47,
   "truncated": false,
   "block": 9,
   "row": 7297
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/plot_connectivity_remote.py",
   "sha256": "66d5ef9b7f320b71ace3af2cffeb0ff15af91c392d60bef48ea53c8ff8d1d745",
   "language": "Python",
   "lines": 45,
   "truncated": false,
   "block": 9,
   "row": 7199
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_clouds_extraction.py",
   "sha256": "c1793e574e943c94703a3fe71861f477dee1d9105d1153c0fa13f1a76b615fe2",
   "language": "Python",
   "lines": 80,
   "truncated": false,
   "block": 9,
   "row": 8394
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_morphometrics.py",
   "sha256": "c81b2e59d868ef34d64ee1359adf8f1aa5b5780ac9269fd1fae2559526dc06f6",
   "language": "Python",
   "lines": 129,
   "truncated": false,
   "block": 9,
   "row": 9225
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_rt.py",
   "sha256": "2cd422eb4af15b0c68b874a89a39db2a7ec24dcc23bf03f821bb5c4afc92a03d",
   "language": "Python",
   "lines": 195,
   "truncated": false,
   "block": 9,
   "row": 10412
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_synthetic_axons.py",
   "sha256": "a039429085657f3e9a5b110710f1f34ab2fcaec02d97a00d3579057054c5b61a",
   "language": "Python",
   "lines": 660,
   "truncated": false,
   "block": 9,
   "row": 11992
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_tc.py",
   "sha256": "e77ca2528804040fca9617c9efadd4a31bf430bd8a321d5a711e04bf6b722678",
   "language": "Python",
   "lines": 466,
   "truncated": false,
   "block": 9,
   "row": 11702
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/scalar_field_extraction.py",
   "sha256": "919c756042c70868a1ca10b903a919249640a2f8dec196e2f9c0bb194aaef523",
   "language": "Python",
   "lines": 323,
   "truncated": false,
   "block": 9,
   "row": 10995
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/tc_morphometrics.py",
   "sha256": "23c4498bf23411ce28e8ab0262ae036d1f7a4f30cde0df5b5f5c8a36c7cb46ef",
   "language": "Python",
   "lines": 65,
   "truncated": false,
   "block": 9,
   "row": 7808
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/tc_rt.py",
   "sha256": "804e3120e40d18b3fbed24f5cee7d8ad3f37d5dd9fd9a514a7b53172c8a1de2a",
   "language": "Python",
   "lines": 296,
   "truncated": false,
   "block": 9,
   "row": 11221
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/fixed_placement.py",
   "sha256": "3361611080d95fdd6aa6059872fa703a8b608bc6ec7246c1ebf566735ddb9b23",
   "language": "Python",
   "lines": 47,
   "truncated": false,
   "block": 9,
   "row": 7630
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/ish_utils.py",
   "sha256": "aac1350ad3bf3604c4278d5ab70c3d6ea109cff17ffa161a270a01859a154967",
   "language": "Python",
   "lines": 145,
   "truncated": false,
   "block": 9,
   "row": 9741
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/plot_placement.py",
   "sha256": "14080ea6ab7b112dc1afd30b6e53e448cbae436d3f9549dbf77944c9eec37402",
   "language": "Python",
   "lines": 65,
   "truncated": false,
   "block": 9,
   "row": 8029
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/plot_validation.py",
   "sha256": "664a7ab05ed3f78105c150a90f9508c262d256f5f86bb6091afc8f8403b68020",
   "language": "Python",
   "lines": 46,
   "truncated": false,
   "block": 9,
   "row": 7436
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_expression_data.py",
   "sha256": "50142e9d1ef07be4f454ec2d89c095a996b4e81046e24352b90d7e6758d822c0",
   "language": "Python",
   "lines": 61,
   "truncated": false,
   "block": 9,
   "row": 7675
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_ish_data.py",
   "sha256": "cc1bb42c2a1006924fb991070f5d453588cf2ffb388d44ef041c8f7f66e2b142",
   "language": "Python",
   "lines": 135,
   "truncated": false,
   "block": 9,
   "row": 9426
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_placement_data.py",
   "sha256": "c0d45c20b13f9677527503743d316c08327a51c32ecd5edff0070aad06fe66d9",
   "language": "Python",
   "lines": 113,
   "truncated": false,
   "block": 9,
   "row": 8967
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/segment_rt.py",
   "sha256": "65923e70b062275d338d01bc1ac6dd3d9c1063b127a463080ec8e3e4fe171470",
   "language": "Python",
   "lines": 112,
   "truncated": false,
   "block": 9,
   "row": 8988
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/store_halved_volumes.py",
   "sha256": "6f939c3495b88478c66ca758bfeb6ce212b7f50290accf713aa1be8ee93e0ee7",
   "language": "Python",
   "lines": 44,
   "truncated": false,
   "block": 9,
   "row": 7599
  },
  {
   "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/store_injection_data.py",
   "sha256": "73cd6df2adc65c668c4a0e8ba231c54156f4b409b0e0820b22cddc0ce7b18cc6",
   "language": "Python",
   "lines": 116,
   "truncated": false,
   "block": 9,
   "row": 8851
  }
 ]
}