File size: 3,863 Bytes
4c3c07f
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
{
 "format": "oscr-script-manifest/1",
 "repository": "zenodo:1400710",
 "url": "10.5281/zenodo.1400710",
 "host": "zenodo.org",
 "commit": "",
 "license": "MIT",
 "license_confirmed_by": "license file LICENSE",
 "redistribution": "yes",
 "files": [
  {
   "path": ".devcontainer/setup.sh",
   "sha256": "13d3609d6d1f01058ac543bf379549f0b0d8e0b9a4a287b30779d1c823656323",
   "language": "Shell",
   "lines": 13,
   "truncated": false,
   "block": 4,
   "row": 1487
  },
  {
   "path": ".github/actions/nf-test/license_message.py",
   "sha256": "b9ab4747c983c2d373dccc02f551b498877d70c8a215d0736e9fc23b6bcfda32",
   "language": "Python",
   "lines": 113,
   "truncated": false,
   "block": 3,
   "row": 22133
  },
  {
   "path": ".hooks/block_pipeline_outdir.sh",
   "sha256": "ccf0df032080b45e2def73c7a1d92396d4bbc5c6c340ded8ef14dbbf8c185962",
   "language": "Shell",
   "lines": 44,
   "truncated": false,
   "block": 4,
   "row": 1860
  },
  {
   "path": "LICENSE",
   "sha256": "49147db9f580fc819494d436920fd8db97589e67989d8a82d5d18a4deb8d49f9",
   "language": "License",
   "lines": 21,
   "truncated": false,
   "block": 3,
   "row": 8038
  },
  {
   "path": "README.md",
   "sha256": "b4e5b29433624097376ce480b1f83660da54503bb95c222ab60d6fdbc75f9279",
   "language": "Text",
   "lines": 157,
   "truncated": false,
   "block": 4,
   "row": 2694
  },
  {
   "path": "bin/deseq2_qc.r",
   "sha256": "5976b735cc528b47d3e7bab2c29e859c62bba450d0f8b0742975911862680c5d",
   "language": "R",
   "lines": 250,
   "truncated": false,
   "block": 4,
   "row": 953
  },
  {
   "path": "bin/mqc_features_stat.py",
   "sha256": "fd417fef562019a14335a8c7b850912c54e6ebd34cb8c2f7e52e22d667f8d190",
   "language": "Python",
   "lines": 90,
   "truncated": false,
   "block": 3,
   "row": 21105
  },
  {
   "path": "modules/nf-core/custom/catadditionalfasta/templates/fasta2gtf.py",
   "sha256": "9f5cde90f3053484c70ae32bdfca14a0efcacfe5fc076b70e2bb72bab094ee72",
   "language": "Python",
   "lines": 132,
   "truncated": false,
   "block": 3,
   "row": 22423
  },
  {
   "path": "modules/nf-core/custom/gtffilter/templates/gtffilter.py",
   "sha256": "3ec8cf0bd25b342e0f57013b668a6f03f13c22a53759a690bbf645a9090088b4",
   "language": "Python",
   "lines": 131,
   "truncated": false,
   "block": 3,
   "row": 22896
  },
  {
   "path": "modules/nf-core/custom/multiqccustombiotype/templates/mqc_features_stat.py",
   "sha256": "903408c5ffa1fecb294a1bd3648b55dd4b69bd789caf015e199c643cc33ae10c",
   "language": "Python",
   "lines": 155,
   "truncated": false,
   "block": 3,
   "row": 23097
  },
  {
   "path": "modules/nf-core/custom/tx2gene/templates/tx2gene.py",
   "sha256": "513d4db5c86277c31a25010c645779bd33bb3bbf2cc1a042ee698e34e9b085c0",
   "language": "Python",
   "lines": 214,
   "truncated": false,
   "block": 3,
   "row": 24641
  },
  {
   "path": "modules/nf-core/dupradar/templates/dupradar.r",
   "sha256": "983bcf7632af081c48989d4a3bcc2eea33514aea7ab47faa105c3c307981c0d5",
   "language": "R",
   "lines": 187,
   "truncated": false,
   "block": 4,
   "row": 762
  },
  {
   "path": "modules/nf-core/ea-utils/gtf2bed/templates/gtf2bed.pl",
   "sha256": "53fc357873c17927bfdb53da0429f09788279c8b66d6c16800215d481eee33ab",
   "language": "Perl",
   "lines": 140,
   "truncated": false,
   "block": 3,
   "row": 17320
  },
  {
   "path": "modules/nf-core/summarizedexperiment/summarizedexperiment/templates/summarizedexperiment.r",
   "sha256": "78c1ce0cedee54e6a51d3b50e2572196910b7909f7c5bec15376e6675d8b9020",
   "language": "R",
   "lines": 237,
   "truncated": false,
   "block": 4,
   "row": 821
  },
  {
   "path": "modules/nf-core/tximeta/tximport/templates/tximport.r",
   "sha256": "6df216ba82760b60baba2eca91dc5c77f800ed3babdc405ab5203f054d5f4221",
   "language": "R",
   "lines": 320,
   "truncated": false,
   "block": 4,
   "row": 1012
  }
 ]
}