Database / manifests /35 /github.com__dmcable__spacexr.json
opsecsystems's picture
Scripts of 2026-09-27: 2 new block(s), 375 manifest(s), 0 removed
f22351b verified
Raw History Blame
24 kB
{
"format": "oscr-script-manifest/1",
"repository": "github.com/dmcable/spacexr",
"url": "https://github.com/dmcable/spacexr/blob/master/vignettes/spatial-transcriptomics.Rmd",
"host": "github.com",
"commit": "9f5dc33c8060f946c6072a138b70e189636e1435",
"license": "GPL-3.0",
"license_confirmed_by": "license file LICENSE",
"redistribution": "yes",
"files": [
{
"path": "AnalysisCSIDE/Figures/figure2.Rmd",
"sha256": "ca13481def4f66bb823e2f5e2c4098c32549586ddf282f2afdd27bcaf7324fc7",
"language": "R",
"lines": 349,
"truncated": false,
"block": 1,
"row": 10526
},
{
"path": "AnalysisCSIDE/Figures/figure3.Rmd",
"sha256": "b16f6511233f47d6a51c4e4aae714a15b8559e6f5d5a2f2e4c007bb27d56e0ad",
"language": "R",
"lines": 180,
"truncated": false,
"block": 1,
"row": 10414
},
{
"path": "AnalysisCSIDE/Figures/figure4_j20.Rmd",
"sha256": "9e233d09fd48f17d269290f78a90a38905266e20345dd64b40c80bfb1ac2edf8",
"language": "R",
"lines": 203,
"truncated": false,
"block": 1,
"row": 10430
},
{
"path": "AnalysisCSIDE/Figures/figure4_merfish.Rmd",
"sha256": "15558e8e659cf24d78755fc9e7f98f652d9b62ef7cf75297d3e25f510b5e48ed",
"language": "R",
"lines": 287,
"truncated": false,
"block": 1,
"row": 10529
},
{
"path": "AnalysisCSIDE/Figures/figure4_testes.Rmd",
"sha256": "043d3ab00ab353088c9e26ad787bc5adb765de2f09e53f35b8b3eeee8e253826",
"language": "R",
"lines": 315,
"truncated": false,
"block": 1,
"row": 10500
},
{
"path": "AnalysisCSIDE/Figures/figure4_visium.Rmd",
"sha256": "5badb7637ec2f78634951707881a93ee4d1f04cbbb164d9a1d85b1494bc54a76",
"language": "R",
"lines": 206,
"truncated": false,
"block": 1,
"row": 10462
},
{
"path": "AnalysisCSIDE/Figures/figure5_nonparametric.Rmd",
"sha256": "2048bcf7bb95a2553e039cfdc6821608914fc27036f741dc47073ab3789ed8dc",
"language": "R",
"lines": 254,
"truncated": false,
"block": 1,
"row": 10442
},
{
"path": "AnalysisCSIDE/Figures/figure5_parametric.Rmd",
"sha256": "bbef2712ddd9664cc100d2dd2a56a93c211d7543b3ff4e52b3c681b00ac070e3",
"language": "R",
"lines": 213,
"truncated": false,
"block": 1,
"row": 10467
},
{
"path": "AnalysisCSIDE/Figures/supp1.Rmd",
"sha256": "4515e6b1ed950e8024f4039168084d319279e7ba86147da46001dd0fbff01b0d",
"language": "R",
"lines": 478,
"truncated": false,
"block": 1,
"row": 10571
},
{
"path": "AnalysisCSIDE/Figures/supp2.Rmd",
"sha256": "5d5cd24dee38b3b20963ca326ab6012a0c3bd4d0b15bb5f22c69330ce7123179",
"language": "R",
"lines": 215,
"truncated": false,
"block": 1,
"row": 10435
},
{
"path": "AnalysisCSIDE/Figures/supp3.Rmd",
"sha256": "02acf39d0f097c3bef2a9aa6f9d532912379f06d59524176ba1d8921afb228f0",
"language": "R",
"lines": 180,
"truncated": false,
"block": 1,
"row": 10352
},
{
"path": "AnalysisCSIDE/Figures/supp4.Rmd",
"sha256": "8aab489f0f4109dce666b67f1692eed0d4d373f1b59b932ce1096cf81c9dd016",
"language": "R",
"lines": 92,
"truncated": false,
"block": 1,
"row": 10260
},
{
"path": "AnalysisCSIDE/Figures/supp5.Rmd",
"sha256": "1839222fd9d8c7f5fe830358e0b0a62623751ba3c6dbf22d9d147529706150fb",
"language": "R",
"lines": 364,
"truncated": false,
"block": 1,
"row": 10523
},
{
"path": "AnalysisCSIDE/Figures/supp6.Rmd",
"sha256": "67dc76d6b07c2858db3dca1145dfacf5966e693dd813a360cc1ab6f2038978ea",
"language": "R",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10173
},
{
"path": "AnalysisCSIDE/Figures/supp7.Rmd",
"sha256": "cb95728c988431012d774ebbf58d18c2fb16a8f3c4ba9bc419d0211e6e6a4cbf",
"language": "R",
"lines": 212,
"truncated": false,
"block": 1,
"row": 10421
},
{
"path": "AnalysisCSIDE/Figures/supp8.Rmd",
"sha256": "3f53fe6ee9e7ff1225db9e0af65591cd242312427bb5b609cf54ee712ddeb437",
"language": "R",
"lines": 166,
"truncated": false,
"block": 1,
"row": 10351
},
{
"path": "AnalysisCSIDE/Preprocessing_and_RCTD/cer_reps.R",
"sha256": "8b43516a5ac225943426613c3e009d6804b88cc0af93e3fc8b0185605d9709c7",
"language": "R",
"lines": 90,
"truncated": false,
"block": 1,
"row": 10221
},
{
"path": "AnalysisCSIDE/Preprocessing_and_RCTD/run_RCTD_testes.R",
"sha256": "25ef2e57b780ae112aa805547b18446a88fdc0cc62b8cae83d2dcbe34a5f3be8",
"language": "R",
"lines": 33,
"truncated": false,
"block": 1,
"row": 10032
},
{
"path": "AnalysisCSIDE/README.Rmd",
"sha256": "c473770aac083c9adec41c59d229463d751e8bccdbaec8239c6f0d1783c5da85",
"language": "R",
"lines": 110,
"truncated": false,
"block": 1,
"row": 10387
},
{
"path": "AnalysisCSIDE/helper_functions/alzheimers_helper.R",
"sha256": "4dbe6c0e7d2a771414e33c365d823bb854e09cca639cc1c85fae3218686b9ba1",
"language": "R",
"lines": 216,
"truncated": false,
"block": 1,
"row": 10370
},
{
"path": "AnalysisCSIDE/helper_functions/de_simulation_helper.R",
"sha256": "7492049ba0d54ce5144cfb04de93e37d8665c232a8aeca4e8ce1ca1f5835c6ea",
"language": "R",
"lines": 135,
"truncated": false,
"block": 1,
"row": 10348
},
{
"path": "AnalysisCSIDE/helper_functions/merge_de_helper.R",
"sha256": "1a2a756890cb98d7373494b7f4341d17830a3e5a9bfc6219069c1dff8bf59b23",
"language": "R",
"lines": 48,
"truncated": false,
"block": 1,
"row": 10107
},
{
"path": "AnalysisCSIDE/helper_functions/personal_utils.R",
"sha256": "167e1d72416fb9e737a82b864943a9aa1c2f2b46eafd2d40f648e1f7751e6064",
"language": "R",
"lines": 35,
"truncated": false,
"block": 1,
"row": 10065
},
{
"path": "AnalysisCSIDE/helper_functions/testes_helper.R",
"sha256": "6fecafa2d419452e6cbd64cadc266b17ff27001b03d88eaf79bebb9970845c05",
"language": "R",
"lines": 263,
"truncated": false,
"block": 1,
"row": 10486
},
{
"path": "AnalysisCSIDE/image_analysis/hcr.R",
"sha256": "256d7ffde3047fa08a6f4b3199ec066b15bf741f15df499e5ce1211e93ff62c0",
"language": "R",
"lines": 110,
"truncated": false,
"block": 1,
"row": 10133
},
{
"path": "AnalysisCSIDE/image_analysis/overlay.R",
"sha256": "b03c3985b7b235243d3db763bced4d909d867f9397770dfc34659eaa16703bf4",
"language": "R",
"lines": 27,
"truncated": false,
"block": 1,
"row": 10014
},
{
"path": "AnalysisCSIDE/j20/align_plaque_density.R",
"sha256": "ca85a7d67f72ed8ac57dc569df9706cf5f48698e24c27cc77dc202523e8e0ab0",
"language": "R",
"lines": 58,
"truncated": false,
"block": 1,
"row": 10123
},
{
"path": "AnalysisCSIDE/j20/create_pd.R",
"sha256": "9bfdb7cbe23e7a070d62cda52d44e7b4f8b8b3937af512a2d94a5a48774d2a8b",
"language": "R",
"lines": 14,
"truncated": false,
"block": 1,
"row": 9944
},
{
"path": "AnalysisCSIDE/j20/pd_to_exvar.R",
"sha256": "fab4dd1ae3cfb9fb3f5703e6ded4e7af3f80f2c6ebcf8b8b0c5f9603a9f81ea8",
"language": "R",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10184
},
{
"path": "AnalysisCSIDE/j20/preprocess_j20.R",
"sha256": "dfc26175164905eee2a48760ce54d78b9f0830ba970eefedf1e3099ea454650f",
"language": "R",
"lines": 45,
"truncated": false,
"block": 1,
"row": 10109
},
{
"path": "AnalysisCSIDE/j20/run_CSIDE_j20_21.R",
"sha256": "b023e43feaa5a635928e563cd1c545b9769f93531ad7fb52c458d236ae4dd10c",
"language": "R",
"lines": 14,
"truncated": false,
"block": 1,
"row": 9951
},
{
"path": "AnalysisCSIDE/j20/run_CSIDE_j20_22.R",
"sha256": "01c1d244b8cefb869e9271136d4fd5d8ea9173f2b432b5c9c1274cf11128d979",
"language": "R",
"lines": 14,
"truncated": false,
"block": 1,
"row": 9948
},
{
"path": "AnalysisCSIDE/j20/run_CSIDE_j20_23.R",
"sha256": "149922ada102d029422ba6f906e512daf9a891810cb43eb16d40928ec81541a8",
"language": "R",
"lines": 14,
"truncated": false,
"block": 1,
"row": 9949
},
{
"path": "AnalysisCSIDE/j20/run_CSIDE_j20_24.R",
"sha256": "9888db7f41b9737903f71317b1880b0676b868f1b2a7aed2852433fded8d2b77",
"language": "R",
"lines": 14,
"truncated": false,
"block": 1,
"row": 9950
},
{
"path": "AnalysisCSIDE/j20/run_RCTD_j20_21.R",
"sha256": "a3427765d658eedd16ef445e09f17a700b24002be89fd4447e6c8c5e50b41a5a",
"language": "R",
"lines": 20,
"truncated": false,
"block": 1,
"row": 9969
},
{
"path": "AnalysisCSIDE/j20/run_RCTD_j20_22.R",
"sha256": "54c9395ccc994cbf18778124b59f50af333b29887870de4234a57feabdede2f8",
"language": "R",
"lines": 20,
"truncated": false,
"block": 1,
"row": 9967
},
{
"path": "AnalysisCSIDE/j20/run_RCTD_j20_23.R",
"sha256": "822fd45b944a138d80ef899c0fdc618a7a36d4893c3bfbde106b17f4c8bca9e3",
"language": "R",
"lines": 20,
"truncated": false,
"block": 1,
"row": 9968
},
{
"path": "AnalysisCSIDE/j20/run_RCTD_j20_24.R",
"sha256": "d768101e77b7c702653d6b4717ed426bb4022b34fcf2d0e6a828b71c2b538069",
"language": "R",
"lines": 20,
"truncated": false,
"block": 1,
"row": 9970
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_cer_08.R",
"sha256": "6f226348749bc7675957655f1f54b8ed4c0075691894607eea3d47730c8dc4b8",
"language": "R",
"lines": 49,
"truncated": false,
"block": 1,
"row": 10140
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_cer_09.R",
"sha256": "286faf4653bdab6a9a3adf9a66ae3b1d334e5e6a0381edc3f883ef54735a4378",
"language": "R",
"lines": 34,
"truncated": false,
"block": 1,
"row": 10087
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_cer_11.R",
"sha256": "cfb777bb94c77554181405aa31a31d79e273a4e69ee9d5421c7d308eb7d4d55f",
"language": "R",
"lines": 34,
"truncated": false,
"block": 1,
"row": 10088
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_merfish.R",
"sha256": "673da9c57e13ca8b54d2e8b7e6d73b47107ac14e55fa2a1fd3f34e9a5e60fadd",
"language": "R",
"lines": 190,
"truncated": false,
"block": 1,
"row": 10373
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_nonparametric.R",
"sha256": "ae7503c3dbd38de5a0fc3707c1323686744fd33efb56f4b6d94455acf3fb0379",
"language": "R",
"lines": 25,
"truncated": false,
"block": 1,
"row": 9989
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_testes.R",
"sha256": "dce7dad126564e63c7c04a0a6e952309b2fa246a954b5718e9acd7e136285fa8",
"language": "R",
"lines": 70,
"truncated": false,
"block": 1,
"row": 10152
},
{
"path": "AnalysisCSIDE/run_CSIDE/run_de_tumor.R",
"sha256": "e5b963398dc67324762c54b3f84caab565103863f40a9b89da9a3bb4e3f67fe7",
"language": "R",
"lines": 138,
"truncated": false,
"block": 1,
"row": 10343
},
{
"path": "AnalysisPaper/MainFigures/Updated-Compatability/figure2-platform-effect.Rmd",
"sha256": "0e25f28564b41fc0ea0a505d0ba96cb6fde8a3316570101285f062cc88a4e67e",
"language": "R",
"lines": 69,
"truncated": false,
"block": 1,
"row": 10151
},
{
"path": "AnalysisPaper/MainFigures/figure1.Rmd",
"sha256": "900cc0d91780ed831b7d5d0bd79de413e3dea9c9fe8de9c143ebccb2f7e9d5bf",
"language": "R",
"lines": 155,
"truncated": false,
"block": 1,
"row": 10374
},
{
"path": "AnalysisPaper/MainFigures/figure2-platform-effect.Rmd",
"sha256": "36966ccbf9987b23a9e3d445c3af50ea1e06638e35da63413946890b93c9bde5",
"language": "R",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10164
},
{
"path": "AnalysisPaper/MainFigures/figure2.Rmd",
"sha256": "8b1d173afaaaa4e47c629ec0c82b432abb9758f60239527402aa8e2746f240be",
"language": "R",
"lines": 192,
"truncated": false,
"block": 1,
"row": 10418
},
{
"path": "AnalysisPaper/MainFigures/figure3.Rmd",
"sha256": "0e33762a3d2348fcf9ccd94410661a7e11562c0de42b3112cc141278a39c04ad",
"language": "R",
"lines": 285,
"truncated": false,
"block": 1,
"row": 10509
},
{
"path": "AnalysisPaper/MainFigures/figure4.Rmd",
"sha256": "836f307991f36c5603c0bddb4652791af3b31ed34c6d34d14ee2b7b1dfcdda96",
"language": "R",
"lines": 214,
"truncated": false,
"block": 1,
"row": 10491
},
{
"path": "AnalysisPaper/MainFigures/figure5-all.Rmd",
"sha256": "0f31af9ea6fc19daacfd0a3c5a8af4512e99041f42bc3994df3491ec34cf7811",
"language": "R",
"lines": 213,
"truncated": false,
"block": 1,
"row": 10473
},
{
"path": "AnalysisPaper/MainFigures/figure5-interneurons.Rmd",
"sha256": "c7de66d7e26aced6510cf97caab1b88515d3f4141c72c1393bb626f07b52b2fa",
"language": "R",
"lines": 277,
"truncated": false,
"block": 1,
"row": 10506
},
{
"path": "AnalysisPaper/MainFigures/figure6-astrocytes.Rmd",
"sha256": "50598043d66a07e7f0df724f471863ba07505ee8e3c8afd1522b742c70c1bbf6",
"language": "R",
"lines": 221,
"truncated": false,
"block": 1,
"row": 10464
},
{
"path": "AnalysisPaper/MainFigures/figure6-spatialgenes.Rmd",
"sha256": "5affff25186417eab48821627365865f356e5318b63b54cfcfb08661961d42c4",
"language": "R",
"lines": 224,
"truncated": false,
"block": 1,
"row": 10434
},
{
"path": "AnalysisPaper/Plotting/figure_utils.R",
"sha256": "b42a70f0166e30ca35a2e1db885c1d529efd0e052c38373c62ea105ccdaf611c",
"language": "R",
"lines": 262,
"truncated": false,
"block": 1,
"row": 10494
},
{
"path": "AnalysisPaper/README.Rmd",
"sha256": "4d8ec315effade89954cf8af39baba1cd84164084870a1fd39f9a2e2985fe855",
"language": "R",
"lines": 70,
"truncated": false,
"block": 1,
"row": 10286
},
{
"path": "AnalysisPaper/Rscripts/doubletsimulation.R",
"sha256": "98a1e522741b947193bc971b35ade57465f86b77c2efc7506798042e0ee95799",
"language": "R",
"lines": 61,
"truncated": false,
"block": 1,
"row": 10178
},
{
"path": "AnalysisPaper/Rscripts/dropSeqProcess.R",
"sha256": "ff4a1feb8c1e8b586cd0e64db8b6b1811a2a7a96c70b741816872bd29b797275",
"language": "R",
"lines": 19,
"truncated": false,
"block": 1,
"row": 9990
},
{
"path": "AnalysisPaper/Rscripts/prepareNMF.R",
"sha256": "112dc791afd9af0c4e5c2883543a4d573aa51734a3361cd4cc1ef0018b22a704",
"language": "R",
"lines": 30,
"truncated": false,
"block": 1,
"row": 10026
},
{
"path": "AnalysisPaper/Rscripts/processNMF.R",
"sha256": "e3460cd880395a373a995d06406d102261c4123470b2d331b3eec55b3f7e9ce0",
"language": "R",
"lines": 20,
"truncated": false,
"block": 1,
"row": 10000
},
{
"path": "AnalysisPaper/Rscripts/processVisium.R",
"sha256": "e5d377daa9fcb06428b5e2ebd61333a07d5530cac3030e3b8f6424873dec95f1",
"language": "R",
"lines": 33,
"truncated": false,
"block": 1,
"row": 10086
},
{
"path": "AnalysisPaper/Rscripts/subcluster.R",
"sha256": "897a290c520f85fea87d6c7f5f4f7c84cb38d7d1b67522ccde8d7d833b4e8d6d",
"language": "R",
"lines": 91,
"truncated": false,
"block": 1,
"row": 10289
},
{
"path": "AnalysisPaper/Rscripts/weightDecompose.R",
"sha256": "a10c418c664e0f2ab88158f1d2c0d308a93fa627fe298ea33a5ed5b8c77c903d",
"language": "R",
"lines": 30,
"truncated": false,
"block": 1,
"row": 10036
},
{
"path": "AnalysisPaper/SuppFigures/supp.Rmd",
"sha256": "48e3282727aa06a4623dc2a5e9c904925d6381974601ec9cbe2909fd5021e263",
"language": "R",
"lines": 504,
"truncated": false,
"block": 1,
"row": 10588
},
{
"path": "AnalysisPaper/SuppFigures/supp_part2.Rmd",
"sha256": "b08b1d7296929e81760e6279b328d2267d91e6f9988174dbc9c256affe7f76d0",
"language": "R",
"lines": 706,
"truncated": false,
"block": 1,
"row": 10601
},
{
"path": "LICENSE",
"sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",
"language": "License",
"lines": 674,
"truncated": false,
"block": 1,
"row": 2235
},
{
"path": "R/CSIDE.R",
"sha256": "b434d876b5bad8fa07d2d6473f7b949d265ce856d0c534f7396ad295c0e02bb5",
"language": "R",
"lines": 748,
"truncated": false,
"block": 1,
"row": 10606
},
{
"path": "R/CSIDE_class.R",
"sha256": "bdf3ea7c2342668415bebae210a6a82c208751da1a07a94e8b68fb78cba0da2f",
"language": "R",
"lines": 153,
"truncated": false,
"block": 1,
"row": 10375
},
{
"path": "R/CSIDE_helper.R",
"sha256": "82e1e4b930dbbfe26b8cce99ecb49b861da7b45a2c6dfe46fe927a35805491b4",
"language": "R",
"lines": 223,
"truncated": false,
"block": 1,
"row": 10390
},
{
"path": "R/CSIDE_plots.R",
"sha256": "c7164583dc0cb4c6c32a69b49ea62608aa4448f82f6a84c87f17c7002bf2cbe0",
"language": "R",
"lines": 524,
"truncated": false,
"block": 1,
"row": 10575
},
{
"path": "R/CSIDE_population.R",
"sha256": "4a3c7b872d095b8d6ae67591a3f22a9ceaee6f4fe4f174213dee03bdba2e36a5",
"language": "R",
"lines": 206,
"truncated": false,
"block": 1,
"row": 10403
},
{
"path": "R/CSIDE_stats.R",
"sha256": "e27804ddbbaee86354c032905d79d4f3ce95ff81ed21f939d22385b59552e25a",
"language": "R",
"lines": 27,
"truncated": false,
"block": 1,
"row": 10021
},
{
"path": "R/CSIDE_utils.R",
"sha256": "0fd838d4c2097eb56b96d092082ee22e418918c891b74e33867013b7e98c8711",
"language": "R",
"lines": 467,
"truncated": false,
"block": 1,
"row": 10568
},
{
"path": "R/IRWLS.R",
"sha256": "e5a1687cc39e7a6dd512914133d058c891a7aea641baa19ac3a13b38a1670094",
"language": "R",
"lines": 106,
"truncated": false,
"block": 1,
"row": 10194
},
{
"path": "R/RCTD_helper.R",
"sha256": "550efaf30f1df94be2d8795e3bae5877ae959e19f469dbc905e18abba1e636cf",
"language": "R",
"lines": 235,
"truncated": false,
"block": 1,
"row": 10466
},
{
"path": "R/RCTDreplicates.R",
"sha256": "7715e5ad9a6b9b46ebf9f2140e97c73e10a72172ca1ebb9acf74be7ac97b4eb8",
"language": "R",
"lines": 308,
"truncated": false,
"block": 1,
"row": 10570
},
{
"path": "R/Reference.R",
"sha256": "81f69532600565404955bb19801c6c55d42aae68e27a0b788ba7024fe4c34807",
"language": "R",
"lines": 118,
"truncated": false,
"block": 1,
"row": 10319
},
{
"path": "R/SpatialRNA.R",
"sha256": "7c5fe064159a2b28f57f2e174ad697bfa0ba53e56801fa9e647a321324955e45",
"language": "R",
"lines": 236,
"truncated": false,
"block": 1,
"row": 10461
},
{
"path": "R/classes.R",
"sha256": "e9279ff79cb3d44f43ac122e56d763c4b338d5a0fa316a6a9eb5a46f9db2b55f",
"language": "R",
"lines": 172,
"truncated": false,
"block": 1,
"row": 10359
},
{
"path": "R/platform_effect_normalization.R",
"sha256": "792129b755a3d549a40f9eafe461fa69ea99d1da9b0abaef9bbfcbbcb774e421",
"language": "R",
"lines": 109,
"truncated": false,
"block": 1,
"row": 10302
},
{
"path": "R/plotting.R",
"sha256": "6dadefedbfccc05cd33963941d4ca85be6ca56ffbbc4cd2dc1eefcae24489972",
"language": "R",
"lines": 449,
"truncated": false,
"block": 1,
"row": 10559
},
{
"path": "R/postProcessing.R",
"sha256": "0ee4a1350a25d6598dd5d7448b863c02dd9a6d2009f287188bb76950f2ef93c2",
"language": "R",
"lines": 137,
"truncated": false,
"block": 1,
"row": 10358
},
{
"path": "R/prob_model.R",
"sha256": "dfb0a9aaec66e4398f5cdb1075f21cc0a0a1ee6db14b9719cf048a74c0aa2e20",
"language": "R",
"lines": 209,
"truncated": false,
"block": 1,
"row": 10339
},
{
"path": "R/processRef.R",
"sha256": "3237305e2136f9b529777d2fe05136b4a2db9fefb093ff3fbb786f0cb93593b6",
"language": "R",
"lines": 59,
"truncated": false,
"block": 1,
"row": 10147
},
{
"path": "R/replintegrate.R",
"sha256": "53ee829241f6613a5529b1d6b5384cc2c219f1c5e4c2542f1a0203e3b9408b72",
"language": "R",
"lines": 59,
"truncated": false,
"block": 1,
"row": 10101
},
{
"path": "R/repliterate.R",
"sha256": "aa5e2ed8204cbf4d4b75823cb072f5ca5673d81e338bc97182844268b83d9746",
"language": "R",
"lines": 30,
"truncated": false,
"block": 1,
"row": 9992
},
{
"path": "R/runRCTD.R",
"sha256": "818e086dd1fc02ab19d52ca9143375228038af30d5f9715d7ea1dfbac2848f76",
"language": "R",
"lines": 204,
"truncated": false,
"block": 1,
"row": 10465
},
{
"path": "R/spacexr.R",
"sha256": "630e46cbb6c8915f4dd0e9234fa6d0ae2c5c35b9338c990e6911062625d7eff8",
"language": "R",
"lines": 165,
"truncated": false,
"block": 1,
"row": 10447
},
{
"path": "R/utils.R",
"sha256": "775e068720defd167d220013e6ba5f5e9f5f8e21867603d2c7c6861da31858a3",
"language": "R",
"lines": 131,
"truncated": false,
"block": 1,
"row": 10314
},
{
"path": "README.Rmd",
"sha256": "0332013420eb973bf1c525857a17cec3f935ec9b4bc6952a6d0fbe976833b333",
"language": "R",
"lines": 148,
"truncated": false,
"block": 1,
"row": 10497
},
{
"path": "README.md",
"sha256": "a3476273556ca4e7e532c8c059cadffb0ca77817dc5521b2a1398dbba32b020f",
"language": "Text",
"lines": 288,
"truncated": false,
"block": 1,
"row": 11982
},
{
"path": "documentation/README.Rmd",
"sha256": "e679f66d3a0eed138c63f2ba08c285cf6f4a6b203356e1213cd67160aac38e0c",
"language": "R",
"lines": 243,
"truncated": false,
"block": 1,
"row": 10551
},
{
"path": "vignettes/CSIDE_celltocell_interactions.Rmd",
"sha256": "8ae5640b349df1e00c55fb4634d2fd58bafab0741a8efe920efe7a3eaa2620ef",
"language": "R",
"lines": 155,
"truncated": false,
"block": 1,
"row": 10371
},
{
"path": "vignettes/CSIDE_pathology_interactions.Rmd",
"sha256": "af32061e57f8000f0f4302509a05f95dbb435aebd37cf57bd72c8c2999c30027",
"language": "R",
"lines": 154,
"truncated": false,
"block": 1,
"row": 10379
},
{
"path": "vignettes/CSIDE_two_regions.Rmd",
"sha256": "e51fb6b1de696a240eff732be1766ee918cc3276ce0f86f565232c9b09ca9172",
"language": "R",
"lines": 157,
"truncated": false,
"block": 1,
"row": 10376
},
{
"path": "vignettes/README.Rmd",
"sha256": "7765b1369435cbc44be7b3445469f6b95f37d054ae878c098497c104ff1640d0",
"language": "R",
"lines": 63,
"truncated": false,
"block": 1,
"row": 10239
},
{
"path": "vignettes/differential-expression.Rmd",
"sha256": "7a075d5866fc01d3e21ade0e1320458fddd5c50e05730d59a1bb5c5e6ac642b8",
"language": "R",
"lines": 143,
"truncated": false,
"block": 1,
"row": 10355
},
{
"path": "vignettes/merfish_nonparametric.Rmd",
"sha256": "9bb3401fe4614ad4211731799e79c8c9c3e1664e048812650d5ba2ad41ff21b6",
"language": "R",
"lines": 140,
"truncated": false,
"block": 1,
"row": 10367
},
{
"path": "vignettes/replicates.Rmd",
"sha256": "ebd44df9233be9916ed4a58ea27f90baca3d91e2d757f7a95efe6de669422d11",
"language": "R",
"lines": 188,
"truncated": false,
"block": 1,
"row": 10470
},
{
"path": "vignettes/spatial-transcriptomics.Rmd",
"sha256": "b92da990f1246477a6f8bb8b45f02c2425ac47adb764751f458b846caa75d26f",
"language": "R",
"lines": 183,
"truncated": false,
"block": 1,
"row": 10448
},
{
"path": "vignettes/visium_CSIDE_celltocell_interactions.Rmd",
"sha256": "280c6281fe69fcb11ae02d1993eb09eb72fa1c3c842bf549b98e1bef9a0d2c40",
"language": "R",
"lines": 86,
"truncated": false,
"block": 1,
"row": 10216
},
{
"path": "vignettes/visium_full_regions.Rmd",
"sha256": "78d2fc36e5fb68ea7cd220d140bb1dbd3ff99f1289372965eb8ee2ec31eed07b",
"language": "R",
"lines": 178,
"truncated": false,
"block": 1,
"row": 10410
},
{
"path": "vignettes/visium_multi.Rmd",
"sha256": "96930c9de093d8f8544a54123d727fca27d0b47ec0d1820044a32a9f54682f27",
"language": "R",
"lines": 91,
"truncated": false,
"block": 1,
"row": 10224
}
]
}