Database / manifests /0d /zenodo__19655606.json
opsecsystems's picture
Scripts of 2026-09-29: 4 new block(s), 1817 manifest(s), 0 removed
c64ac01 verified
Raw History Blame Contribute Delete
13 kB
{
"format": "oscr-script-manifest/1",
"repository": "zenodo:19655606",
"url": "10.5281/zenodo.19655606",
"host": "zenodo.org",
"commit": "",
"license": "MIT",
"license_confirmed_by": "license file LICENSE",
"redistribution": "yes",
"files": [
{
"path": "LICENSE",
"sha256": "6bf298022b965ca1b3b32f88bd462034b102153cacdc2e666d7cbcb69189786a",
"language": "License",
"lines": 21,
"truncated": false,
"block": 6,
"row": 1625
},
{
"path": "README.md",
"sha256": "118def47411f32bbbb63181683772361e6391c50a32fa2f009636bfdb7d308e4",
"language": "Text",
"lines": 76,
"truncated": false,
"block": 8,
"row": 9979
},
{
"path": "additional_figures/limits_global_fdr.py",
"sha256": "d09187ee1d75345ce2acb221f2326518e784007be362b34cb035ecd4ca210b06",
"language": "Python",
"lines": 114,
"truncated": false,
"block": 6,
"row": 38788
},
{
"path": "applications/alzheimers/data/clean_data.py",
"sha256": "00792974a151b5bc88e47432c3ac4161b98e7f8b624c09ed01d914b7d0a5124f",
"language": "Python",
"lines": 66,
"truncated": false,
"block": 6,
"row": 31674
},
{
"path": "applications/alzheimers/enrichment/gene_enrichment.py",
"sha256": "3edd57e1294f912c820d2e074120f121fbf60445dfeb3ce29a553d895d18caab",
"language": "Python",
"lines": 128,
"truncated": false,
"block": 6,
"row": 40891
},
{
"path": "applications/alzheimers/figures/plot_results.py",
"sha256": "4b42f3c8577a0e122674f55978b6bb0ab5f1ad8cbb30ab3bea799c0f486a30e1",
"language": "Python",
"lines": 160,
"truncated": false,
"block": 6,
"row": 38366
},
{
"path": "applications/alzheimers/run_methods.py",
"sha256": "71b8451299383f35db7d508db3abab7c520f91b6566bd47e2078b2a2f973b189",
"language": "Python",
"lines": 230,
"truncated": false,
"block": 7,
"row": 325
},
{
"path": "applications/alzheimers/run_pfs.py",
"sha256": "cad853b59e76b74d4b3a33a67d39d9f099cd881fc3823486f188a18e78e3e1e5",
"language": "Python",
"lines": 142,
"truncated": false,
"block": 6,
"row": 37640
},
{
"path": "applications/breast_cancer/data/load_and_clean.py",
"sha256": "cddd5abc55b6b6d79c278142a2afca2b316e0923da11aec328f74975ee49b4b7",
"language": "Python",
"lines": 237,
"truncated": false,
"block": 7,
"row": 638
},
{
"path": "applications/breast_cancer/data/save_cleaned_data.py",
"sha256": "d665e6642131be3b7d6ecfed8fe6ae21b2c397ad8f7c22145c2562ff071f2c77",
"language": "Python",
"lines": 33,
"truncated": false,
"block": 6,
"row": 25378
},
{
"path": "applications/breast_cancer/enrichment/gene_enrichment.py",
"sha256": "fbb9ef81428e8977a81279fc8ab80d0dea643285712dd9426358eb96b44effb6",
"language": "Python",
"lines": 98,
"truncated": false,
"block": 6,
"row": 38138
},
{
"path": "applications/breast_cancer/enrichment/protein_enrichment.py",
"sha256": "f140b9c2a44d876530460af02df4f25661311b9ac754845a1c8667c1403483bf",
"language": "Python",
"lines": 168,
"truncated": false,
"block": 6,
"row": 40060
},
{
"path": "applications/breast_cancer/figures/plot_other_methods.py",
"sha256": "77e2e9449da4d99950c70a9378fc76c24b91c7562c8732bc952d642f09a46572",
"language": "Python",
"lines": 191,
"truncated": false,
"block": 6,
"row": 39107
},
{
"path": "applications/breast_cancer/figures/plot_pfs_results.py",
"sha256": "d6874483b02d95944bab1c4235adcb51df72c63274e28ece796e2bf075c09f73",
"language": "Python",
"lines": 141,
"truncated": false,
"block": 6,
"row": 38766
},
{
"path": "applications/breast_cancer/run_methods.py",
"sha256": "ce9960781095c7910ad10e80ba69cd0ec22ff6e709287af77972aa7aedced17e",
"language": "Python",
"lines": 219,
"truncated": false,
"block": 7,
"row": 785
},
{
"path": "applications/breast_cancer/run_pfs.py",
"sha256": "cbfdc319f1f1244bcc27c29d51a3e508e7aa060d71937f3022577cb8d9f9621d",
"language": "Python",
"lines": 141,
"truncated": false,
"block": 6,
"row": 36518
},
{
"path": "applications/env_cancer_study/data/load_and_clean.py",
"sha256": "6a10c07acc5ecd26bdbc57b5a2fd1d21e107a49abe41087442235a568f481c2e",
"language": "Python",
"lines": 130,
"truncated": false,
"block": 6,
"row": 39483
},
{
"path": "applications/env_cancer_study/data/save_cleaned_data.py",
"sha256": "cc2d7831ba48b6a5c7b2e6999e1aa6b7e7ee192a256d6199cc67eee8039ccfac",
"language": "Python",
"lines": 61,
"truncated": false,
"block": 6,
"row": 29820
},
{
"path": "applications/env_cancer_study/figures/heatmaps.py",
"sha256": "dcb0e5c58bc67b3cdf401081d88394f46c9472128e95fb7845c4dd7b66894c14",
"language": "Python",
"lines": 151,
"truncated": false,
"block": 6,
"row": 39700
},
{
"path": "applications/env_cancer_study/figures/plot_glasso_results.py",
"sha256": "7ec6da497c7c607115346745649619ae8cdbfd0df66a8c8e5d99889e37c316ba",
"language": "Python",
"lines": 120,
"truncated": false,
"block": 6,
"row": 35483
},
{
"path": "applications/env_cancer_study/figures/plot_other_methods.py",
"sha256": "8a02553e6c9a2b5814c97a49873b45e246f28e1b4e5ea4d26493c4d3de65f4a3",
"language": "Python",
"lines": 180,
"truncated": false,
"block": 6,
"row": 40191
},
{
"path": "applications/env_cancer_study/figures/plot_pfs_results.py",
"sha256": "24372a44f8df211ec4dc1cdc9bebf328af70a87d3310b52c6f1d831eb6a95bf8",
"language": "Python",
"lines": 132,
"truncated": false,
"block": 6,
"row": 37468
},
{
"path": "applications/env_cancer_study/figures/scatter_plots.py",
"sha256": "8b9bddb33c7f5a022071e8f483face9ae40eb37f4afe7bf7ad03eaed50fbcedf",
"language": "Python",
"lines": 70,
"truncated": false,
"block": 6,
"row": 30748
},
{
"path": "applications/env_cancer_study/run_methods.py",
"sha256": "49ce45b84818229d37f91ec6667808f6ebf4b1392cea04b5486a92c319b355d7",
"language": "Python",
"lines": 206,
"truncated": false,
"block": 6,
"row": 45499
},
{
"path": "applications/env_cancer_study/run_pfs.py",
"sha256": "97e15a3eb2a51917d8b7f70cfad4bd4b53f19b0ca247b7572f9a1d8cd87a0e56",
"language": "Python",
"lines": 108,
"truncated": false,
"block": 6,
"row": 35837
},
{
"path": "applications/hcp/data/clean_data.py",
"sha256": "fe9e46d40b881516cf372d7775c01ddc3a3ba5bb1bea3d740eef6710aa4c1416",
"language": "Python",
"lines": 168,
"truncated": false,
"block": 6,
"row": 42081
},
{
"path": "applications/hcp/data/format_feature_names.py",
"sha256": "f2bc8d1cf14ba09e4e3e5458d0055f14685529ab948e8c93d6a73f6a2a632ec1",
"language": "Python",
"lines": 63,
"truncated": false,
"block": 6,
"row": 28244
},
{
"path": "applications/hcp/enrichment/enrichment_analysis.py",
"sha256": "299fffe971752d2b07fa66d1df7b3f3df1dbb7559901a9ee8217fdf1c1b45c95",
"language": "Python",
"lines": 222,
"truncated": false,
"block": 6,
"row": 45588
},
{
"path": "applications/hcp/enrichment/enrichment_helpers.py",
"sha256": "7bd237a88c13f1bdbb8eb88891458578910e6608958d6846a3774882a7dd0c60",
"language": "Python",
"lines": 69,
"truncated": false,
"block": 6,
"row": 31530
},
{
"path": "applications/hcp/figures/plot_graphml_file.py",
"sha256": "048eac9881ddce93c6c3edc8b49373bca3d9552d83ea94601205262131d65b10",
"language": "Python",
"lines": 108,
"truncated": false,
"block": 6,
"row": 32946
},
{
"path": "applications/hcp/figures/plot_results.py",
"sha256": "14cf42a025f3fa6ad0159c068f88e40890201876bc50c88ef369233c56c06835",
"language": "Python",
"lines": 172,
"truncated": false,
"block": 6,
"row": 39571
},
{
"path": "applications/hcp/run_methods.py",
"sha256": "ee1da51f23f8992ade22a85c475c23aad65acfc5c011159b2a3005b5aa769211",
"language": "Python",
"lines": 207,
"truncated": false,
"block": 6,
"row": 44949
},
{
"path": "applications/hcp/run_pfs.py",
"sha256": "e90c067fb0e3a9897598355025375232c0092f331e381b4bb45edb1bf0273a54",
"language": "Python",
"lines": 167,
"truncated": false,
"block": 6,
"row": 38843
},
{
"path": "methods/__init__.py",
"sha256": "24c334e9ea35be72107d2de91a0c6d7ba3e6b712b98a4187abea989d79ce0596",
"language": "Python",
"lines": 52,
"truncated": false,
"block": 6,
"row": 33824
},
{
"path": "methods/metadata.py",
"sha256": "8983893900912db0cfe8f4c872e39f1e2c85de025643e6d9c048df7db38dae0c",
"language": "Python",
"lines": 59,
"truncated": false,
"block": 6,
"row": 27620
},
{
"path": "methods/run_bnlearn.py",
"sha256": "a3432288784e9a8064963be3c156cf5b80e1b8562c745a43f60b750fd846f27d",
"language": "Python",
"lines": 165,
"truncated": false,
"block": 6,
"row": 39939
},
{
"path": "methods/run_huge.py",
"sha256": "c58a50b9f4e84bd08571eb685e255ec934ed2828968db2494a78ea3e5999edbb",
"language": "Python",
"lines": 53,
"truncated": false,
"block": 6,
"row": 29717
},
{
"path": "methods/run_mgm.py",
"sha256": "c69fd5ec1407dd43fea15ea448d4c9d2e586627aa6e0b604c070e6d17ad25132",
"language": "Python",
"lines": 81,
"truncated": false,
"block": 6,
"row": 31630
},
{
"path": "methods/run_silggm.py",
"sha256": "3fc5824b63ea079945df5b7fba95d564e1c768386f4852ba2cd39f8225c232b6",
"language": "Python",
"lines": 69,
"truncated": false,
"block": 6,
"row": 32227
},
{
"path": "simulations/analyze_sim_results.py",
"sha256": "f35fdba4bf9edc6e8359b72874f16ec9295005d9d13c62a846ec3df77c95cde9",
"language": "Python",
"lines": 150,
"truncated": false,
"block": 6,
"row": 39809
},
{
"path": "simulations/default_settings.py",
"sha256": "ac9643b6fccabc672fface6f1aa36ee92de8009dc4e6c85b731d50eba6954123",
"language": "Python",
"lines": 100,
"truncated": false,
"block": 6,
"row": 31785
},
{
"path": "simulations/illustration.py",
"sha256": "0b4ed913a8c00337a5e00cc94cbf8542024bb291052ae0ce8d0d45e3ff0a1cf7",
"language": "Python",
"lines": 200,
"truncated": false,
"block": 6,
"row": 41308
},
{
"path": "simulations/plot_sim_results.py",
"sha256": "c2b976517e34830167cfffae70c42590b4fa66275466fd01d8402248fe1d2bd5",
"language": "Python",
"lines": 107,
"truncated": false,
"block": 6,
"row": 34642
},
{
"path": "simulations/qvalue_comparison/analyze_qval_results.py",
"sha256": "3ffc76b5d9b233b8c3782525e9ace4e133194ae6cdd14cce67b993295c54924f",
"language": "Python",
"lines": 136,
"truncated": false,
"block": 6,
"row": 39684
},
{
"path": "simulations/qvalue_comparison/qvalue_comparison.py",
"sha256": "537301cc5757b33d1d37d770b47b47baac929bd9421f4dabb0d3ec26c764a5d5",
"language": "Python",
"lines": 275,
"truncated": false,
"block": 7,
"row": 2026
},
{
"path": "simulations/qvalue_comparison/qvalue_methods.py",
"sha256": "332056db6bd94690bb84d3222917d886fbb4026652d5e5e4deb7f7415546a2af",
"language": "Python",
"lines": 187,
"truncated": false,
"block": 6,
"row": 40956
},
{
"path": "simulations/runtimes/analyze_runtime_results.py",
"sha256": "8f19540fa20571c7a228b8fd9719cacb9931a925e2edad25b5c07140729aae13",
"language": "Python",
"lines": 136,
"truncated": false,
"block": 6,
"row": 35998
},
{
"path": "simulations/runtimes/default_settings.py",
"sha256": "8e12961c93503c646656986020b94f957f15721b7e696c60e00157179918f184",
"language": "Python",
"lines": 14,
"truncated": false,
"block": 6,
"row": 22584
},
{
"path": "simulations/runtimes/runtime_results/combine_runtime_results.py",
"sha256": "0f522cb5e1ae10ee0178f66f31bb3c19026bbf71aa6361c52f0a4b77c78c985b",
"language": "Python",
"lines": 183,
"truncated": false,
"block": 6,
"row": 38899
},
{
"path": "simulations/runtimes/runtimes.py",
"sha256": "56fd8cbe68a7b1025af013e897958c32bca52a1c95f612bcbb1b338d2d378a18",
"language": "Python",
"lines": 95,
"truncated": false,
"block": 6,
"row": 34076
},
{
"path": "simulations/simulate_block.py",
"sha256": "a43cc455ac8270d9afe4f0db0e0fe281f5fe158827605804ca4096146c83761b",
"language": "Python",
"lines": 95,
"truncated": false,
"block": 6,
"row": 36423
},
{
"path": "simulations/simulation.py",
"sha256": "db277c3653a71753c39e621b3016b98cef6387759a0f5eddd347f765d4ec9415",
"language": "Python",
"lines": 298,
"truncated": false,
"block": 7,
"row": 2556
},
{
"path": "utils.py",
"sha256": "1643fdd77d16731bcd8b06e4d13f4c4f43c3e56651dec24d8000e6aaa5ae0b4c",
"language": "Python",
"lines": 33,
"truncated": false,
"block": 6,
"row": 24828
}
]
}