| { |
| "format": "oscr-script-manifest/1", |
| "repository": "github.com/konradjk/loftee", |
| "url": "https://github.com/konradjk/loftee", |
| "host": "github.com", |
| "commit": "c7a87dffe3b96a729d299ca3ccb1c25db7b44e30", |
| "license": "MIT", |
| "license_confirmed_by": "license file LICENSE", |
| "redistribution": "yes", |
| "files": [ |
| { |
| "path": "LICENSE", |
| "sha256": "e618518ea1fd3a2095e892450bcef9ea902daeaaf581685af17b729e5cb4cc89", |
| "language": "License", |
| "lines": 21, |
| "truncated": false, |
| "block": 6, |
| "row": 1898 |
| }, |
| { |
| "path": "README.md", |
| "sha256": "e488af4bb4dae415302f7ffb0c3c5aac5d7403a0225550d0d2e40db92cdd95fb", |
| "language": "Text", |
| "lines": 345, |
| "truncated": false, |
| "block": 8, |
| "row": 10832 |
| }, |
| { |
| "path": "de_novo_donor.pl", |
| "sha256": "26748ce569f1e313a6351e68d22f43318bd520c2d364f4bfb64b0d1c0ff794f0", |
| "language": "Perl", |
| "lines": 222, |
| "truncated": false, |
| "block": 6, |
| "row": 20081 |
| }, |
| { |
| "path": "extended_splice.pl", |
| "sha256": "54431acad326b6ccc79d0e6882387ce13ef7fc0aa5cd4bcd8dc91117d75efec8", |
| "language": "Perl", |
| "lines": 278, |
| "truncated": false, |
| "block": 6, |
| "row": 20083 |
| }, |
| { |
| "path": "gerp_dist.pl", |
| "sha256": "b7bf6e2aa9f36e6b9915e3c401c6b6d020f950c04402ce1a23106992a92a10ab", |
| "language": "Perl", |
| "lines": 136, |
| "truncated": false, |
| "block": 6, |
| "row": 20070 |
| }, |
| { |
| "path": "loftee_splice_utils.pl", |
| "sha256": "c01af2f3767bfeb3047de4314c2aacf7494703db2b748a6a23384e0a25e7e549", |
| "language": "Perl", |
| "lines": 244, |
| "truncated": false, |
| "block": 6, |
| "row": 20079 |
| }, |
| { |
| "path": "maxEntScan/score3.pl", |
| "sha256": "c539cfe5f3ecafd4757ec802f945f3e730ba9cfe407067f9ac74e6eeff0b9c37", |
| "language": "Perl", |
| "lines": 166, |
| "truncated": false, |
| "block": 6, |
| "row": 20066 |
| }, |
| { |
| "path": "maxEntScan/score5.pl", |
| "sha256": "dd3f2032ce80bdbce802cb4846c5d09ea979e7bcf70376a52e58301b69fe6ad4", |
| "language": "Perl", |
| "lines": 102, |
| "truncated": false, |
| "block": 6, |
| "row": 20042 |
| }, |
| { |
| "path": "maxEntScan/splicemodels/hashseq.m", |
| "sha256": "7aca84617e9990aa4ca76f9b64359cc66dd201ea7d801528a864e0a8ae03a949", |
| "language": "MATLAB", |
| "lines": 8, |
| "truncated": false, |
| "block": 6, |
| "row": 2649 |
| }, |
| { |
| "path": "splice_site_scan.pl", |
| "sha256": "f658b666e16fa900e0ffd595ecb6844a3a73da9b231a23f50ada5e3fd19a9079", |
| "language": "Perl", |
| "lines": 252, |
| "truncated": false, |
| "block": 6, |
| "row": 20082 |
| }, |
| { |
| "path": "src/loftee_utils.py", |
| "sha256": "af5a259d58837c2dacdec5e267e12ed35a8a9b91626d68a036539c43653c3968", |
| "language": "Python", |
| "lines": 228, |
| "truncated": false, |
| "block": 7, |
| "row": 731 |
| }, |
| { |
| "path": "src/read_vep_vcf.py", |
| "sha256": "2adf0625285720439e7b8c19d46a63cb2d68c5b69aedffa9ac986e93a648fc3e", |
| "language": "Python", |
| "lines": 60, |
| "truncated": false, |
| "block": 6, |
| "row": 33637 |
| }, |
| { |
| "path": "src/strip_vcf_to_sites.py", |
| "sha256": "be994217710d7d3acd6c737eac02fb27d6a31680e0d161af7c08ef4c84e1d7f7", |
| "language": "Python", |
| "lines": 25, |
| "truncated": false, |
| "block": 6, |
| "row": 24357 |
| }, |
| { |
| "path": "src/tableize_vcf.py", |
| "sha256": "fce4c0dcbfc34ed4cb9e27edd240746beb0db663498ae2f9b2167e030d42e0f9", |
| "language": "Python", |
| "lines": 431, |
| "truncated": false, |
| "block": 7, |
| "row": 10072 |
| }, |
| { |
| "path": "svm.pl", |
| "sha256": "495aa25f6116fe6459ec66cac8031f7e4f4624cdb84f34789d215a56fc2719cb", |
| "language": "Perl", |
| "lines": 92, |
| "truncated": false, |
| "block": 6, |
| "row": 20048 |
| }, |
| { |
| "path": "utr_splice.pl", |
| "sha256": "725104b489729aa5855b9a94fd704819019133721d7f72d01167311e3b001906", |
| "language": "Perl", |
| "lines": 37, |
| "truncated": false, |
| "block": 6, |
| "row": 20033 |
| } |
| ] |
| } |
