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| # Copyright (c) OpenMMLab. All rights reserved. | |
| import numpy as np | |
| from mmseg.core.evaluation import (eval_metrics, mean_dice, mean_fscore, | |
| mean_iou) | |
| from mmseg.core.evaluation.metrics import f_score | |
| def get_confusion_matrix(pred_label, label, num_classes, ignore_index): | |
| """Intersection over Union | |
| Args: | |
| pred_label (np.ndarray): 2D predict map | |
| label (np.ndarray): label 2D label map | |
| num_classes (int): number of categories | |
| ignore_index (int): index ignore in evaluation | |
| """ | |
| mask = (label != ignore_index) | |
| pred_label = pred_label[mask] | |
| label = label[mask] | |
| n = num_classes | |
| inds = n * label + pred_label | |
| mat = np.bincount(inds, minlength=n**2).reshape(n, n) | |
| return mat | |
| # This func is deprecated since it's not memory efficient | |
| def legacy_mean_iou(results, gt_seg_maps, num_classes, ignore_index): | |
| num_imgs = len(results) | |
| assert len(gt_seg_maps) == num_imgs | |
| total_mat = np.zeros((num_classes, num_classes), dtype=np.float) | |
| for i in range(num_imgs): | |
| mat = get_confusion_matrix( | |
| results[i], gt_seg_maps[i], num_classes, ignore_index=ignore_index) | |
| total_mat += mat | |
| all_acc = np.diag(total_mat).sum() / total_mat.sum() | |
| acc = np.diag(total_mat) / total_mat.sum(axis=1) | |
| iou = np.diag(total_mat) / ( | |
| total_mat.sum(axis=1) + total_mat.sum(axis=0) - np.diag(total_mat)) | |
| return all_acc, acc, iou | |
| # This func is deprecated since it's not memory efficient | |
| def legacy_mean_dice(results, gt_seg_maps, num_classes, ignore_index): | |
| num_imgs = len(results) | |
| assert len(gt_seg_maps) == num_imgs | |
| total_mat = np.zeros((num_classes, num_classes), dtype=np.float) | |
| for i in range(num_imgs): | |
| mat = get_confusion_matrix( | |
| results[i], gt_seg_maps[i], num_classes, ignore_index=ignore_index) | |
| total_mat += mat | |
| all_acc = np.diag(total_mat).sum() / total_mat.sum() | |
| acc = np.diag(total_mat) / total_mat.sum(axis=1) | |
| dice = 2 * np.diag(total_mat) / ( | |
| total_mat.sum(axis=1) + total_mat.sum(axis=0)) | |
| return all_acc, acc, dice | |
| # This func is deprecated since it's not memory efficient | |
| def legacy_mean_fscore(results, | |
| gt_seg_maps, | |
| num_classes, | |
| ignore_index, | |
| beta=1): | |
| num_imgs = len(results) | |
| assert len(gt_seg_maps) == num_imgs | |
| total_mat = np.zeros((num_classes, num_classes), dtype=np.float) | |
| for i in range(num_imgs): | |
| mat = get_confusion_matrix( | |
| results[i], gt_seg_maps[i], num_classes, ignore_index=ignore_index) | |
| total_mat += mat | |
| all_acc = np.diag(total_mat).sum() / total_mat.sum() | |
| recall = np.diag(total_mat) / total_mat.sum(axis=1) | |
| precision = np.diag(total_mat) / total_mat.sum(axis=0) | |
| fv = np.vectorize(f_score) | |
| fscore = fv(precision, recall, beta=beta) | |
| return all_acc, recall, precision, fscore | |
| def test_metrics(): | |
| pred_size = (10, 30, 30) | |
| num_classes = 19 | |
| ignore_index = 255 | |
| results = np.random.randint(0, num_classes, size=pred_size) | |
| label = np.random.randint(0, num_classes, size=pred_size) | |
| # Test the availability of arg: ignore_index. | |
| label[:, 2, 5:10] = ignore_index | |
| # Test the correctness of the implementation of mIoU calculation. | |
| ret_metrics = eval_metrics( | |
| results, label, num_classes, ignore_index, metrics='mIoU') | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'IoU'] | |
| all_acc_l, acc_l, iou_l = legacy_mean_iou(results, label, num_classes, | |
| ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(iou, iou_l) | |
| # Test the correctness of the implementation of mDice calculation. | |
| ret_metrics = eval_metrics( | |
| results, label, num_classes, ignore_index, metrics='mDice') | |
| all_acc, acc, dice = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'Dice'] | |
| all_acc_l, acc_l, dice_l = legacy_mean_dice(results, label, num_classes, | |
| ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(dice, dice_l) | |
| # Test the correctness of the implementation of mDice calculation. | |
| ret_metrics = eval_metrics( | |
| results, label, num_classes, ignore_index, metrics='mFscore') | |
| all_acc, recall, precision, fscore = ret_metrics['aAcc'], ret_metrics[ | |
| 'Recall'], ret_metrics['Precision'], ret_metrics['Fscore'] | |
| all_acc_l, recall_l, precision_l, fscore_l = legacy_mean_fscore( | |
| results, label, num_classes, ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(recall, recall_l) | |
| assert np.allclose(precision, precision_l) | |
| assert np.allclose(fscore, fscore_l) | |
| # Test the correctness of the implementation of joint calculation. | |
| ret_metrics = eval_metrics( | |
| results, | |
| label, | |
| num_classes, | |
| ignore_index, | |
| metrics=['mIoU', 'mDice', 'mFscore']) | |
| all_acc, acc, iou, dice, precision, recall, fscore = ret_metrics[ | |
| 'aAcc'], ret_metrics['Acc'], ret_metrics['IoU'], ret_metrics[ | |
| 'Dice'], ret_metrics['Precision'], ret_metrics[ | |
| 'Recall'], ret_metrics['Fscore'] | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(iou, iou_l) | |
| assert np.allclose(dice, dice_l) | |
| assert np.allclose(precision, precision_l) | |
| assert np.allclose(recall, recall_l) | |
| assert np.allclose(fscore, fscore_l) | |
| # Test the correctness of calculation when arg: num_classes is larger | |
| # than the maximum value of input maps. | |
| results = np.random.randint(0, 5, size=pred_size) | |
| label = np.random.randint(0, 4, size=pred_size) | |
| ret_metrics = eval_metrics( | |
| results, | |
| label, | |
| num_classes, | |
| ignore_index=255, | |
| metrics='mIoU', | |
| nan_to_num=-1) | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'IoU'] | |
| assert acc[-1] == -1 | |
| assert iou[-1] == -1 | |
| ret_metrics = eval_metrics( | |
| results, | |
| label, | |
| num_classes, | |
| ignore_index=255, | |
| metrics='mDice', | |
| nan_to_num=-1) | |
| all_acc, acc, dice = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'Dice'] | |
| assert acc[-1] == -1 | |
| assert dice[-1] == -1 | |
| ret_metrics = eval_metrics( | |
| results, | |
| label, | |
| num_classes, | |
| ignore_index=255, | |
| metrics='mFscore', | |
| nan_to_num=-1) | |
| all_acc, precision, recall, fscore = ret_metrics['aAcc'], ret_metrics[ | |
| 'Precision'], ret_metrics['Recall'], ret_metrics['Fscore'] | |
| assert precision[-1] == -1 | |
| assert recall[-1] == -1 | |
| assert fscore[-1] == -1 | |
| ret_metrics = eval_metrics( | |
| results, | |
| label, | |
| num_classes, | |
| ignore_index=255, | |
| metrics=['mDice', 'mIoU', 'mFscore'], | |
| nan_to_num=-1) | |
| all_acc, acc, iou, dice, precision, recall, fscore = ret_metrics[ | |
| 'aAcc'], ret_metrics['Acc'], ret_metrics['IoU'], ret_metrics[ | |
| 'Dice'], ret_metrics['Precision'], ret_metrics[ | |
| 'Recall'], ret_metrics['Fscore'] | |
| assert acc[-1] == -1 | |
| assert dice[-1] == -1 | |
| assert iou[-1] == -1 | |
| assert precision[-1] == -1 | |
| assert recall[-1] == -1 | |
| assert fscore[-1] == -1 | |
| # Test the bug which is caused by torch.histc. | |
| # torch.histc: https://pytorch.org/docs/stable/generated/torch.histc.html | |
| # When the arg:bins is set to be same as arg:max, | |
| # some channels of mIoU may be nan. | |
| results = np.array([np.repeat(31, 59)]) | |
| label = np.array([np.arange(59)]) | |
| num_classes = 59 | |
| ret_metrics = eval_metrics( | |
| results, label, num_classes, ignore_index=255, metrics='mIoU') | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'IoU'] | |
| assert not np.any(np.isnan(iou)) | |
| def test_mean_iou(): | |
| pred_size = (10, 30, 30) | |
| num_classes = 19 | |
| ignore_index = 255 | |
| results = np.random.randint(0, num_classes, size=pred_size) | |
| label = np.random.randint(0, num_classes, size=pred_size) | |
| label[:, 2, 5:10] = ignore_index | |
| ret_metrics = mean_iou(results, label, num_classes, ignore_index) | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'IoU'] | |
| all_acc_l, acc_l, iou_l = legacy_mean_iou(results, label, num_classes, | |
| ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(iou, iou_l) | |
| results = np.random.randint(0, 5, size=pred_size) | |
| label = np.random.randint(0, 4, size=pred_size) | |
| ret_metrics = mean_iou( | |
| results, label, num_classes, ignore_index=255, nan_to_num=-1) | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'IoU'] | |
| assert acc[-1] == -1 | |
| assert acc[-1] == -1 | |
| def test_mean_dice(): | |
| pred_size = (10, 30, 30) | |
| num_classes = 19 | |
| ignore_index = 255 | |
| results = np.random.randint(0, num_classes, size=pred_size) | |
| label = np.random.randint(0, num_classes, size=pred_size) | |
| label[:, 2, 5:10] = ignore_index | |
| ret_metrics = mean_dice(results, label, num_classes, ignore_index) | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'Dice'] | |
| all_acc_l, acc_l, dice_l = legacy_mean_dice(results, label, num_classes, | |
| ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(iou, dice_l) | |
| results = np.random.randint(0, 5, size=pred_size) | |
| label = np.random.randint(0, 4, size=pred_size) | |
| ret_metrics = mean_dice( | |
| results, label, num_classes, ignore_index=255, nan_to_num=-1) | |
| all_acc, acc, dice = ret_metrics['aAcc'], ret_metrics['Acc'], ret_metrics[ | |
| 'Dice'] | |
| assert acc[-1] == -1 | |
| assert dice[-1] == -1 | |
| def test_mean_fscore(): | |
| pred_size = (10, 30, 30) | |
| num_classes = 19 | |
| ignore_index = 255 | |
| results = np.random.randint(0, num_classes, size=pred_size) | |
| label = np.random.randint(0, num_classes, size=pred_size) | |
| label[:, 2, 5:10] = ignore_index | |
| ret_metrics = mean_fscore(results, label, num_classes, ignore_index) | |
| all_acc, recall, precision, fscore = ret_metrics['aAcc'], ret_metrics[ | |
| 'Recall'], ret_metrics['Precision'], ret_metrics['Fscore'] | |
| all_acc_l, recall_l, precision_l, fscore_l = legacy_mean_fscore( | |
| results, label, num_classes, ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(recall, recall_l) | |
| assert np.allclose(precision, precision_l) | |
| assert np.allclose(fscore, fscore_l) | |
| ret_metrics = mean_fscore( | |
| results, label, num_classes, ignore_index, beta=2) | |
| all_acc, recall, precision, fscore = ret_metrics['aAcc'], ret_metrics[ | |
| 'Recall'], ret_metrics['Precision'], ret_metrics['Fscore'] | |
| all_acc_l, recall_l, precision_l, fscore_l = legacy_mean_fscore( | |
| results, label, num_classes, ignore_index, beta=2) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(recall, recall_l) | |
| assert np.allclose(precision, precision_l) | |
| assert np.allclose(fscore, fscore_l) | |
| results = np.random.randint(0, 5, size=pred_size) | |
| label = np.random.randint(0, 4, size=pred_size) | |
| ret_metrics = mean_fscore( | |
| results, label, num_classes, ignore_index=255, nan_to_num=-1) | |
| all_acc, recall, precision, fscore = ret_metrics['aAcc'], ret_metrics[ | |
| 'Recall'], ret_metrics['Precision'], ret_metrics['Fscore'] | |
| assert recall[-1] == -1 | |
| assert precision[-1] == -1 | |
| assert fscore[-1] == -1 | |
| def test_filename_inputs(): | |
| import tempfile | |
| import cv2 | |
| def save_arr(input_arrays: list, title: str, is_image: bool, dir: str): | |
| filenames = [] | |
| SUFFIX = '.png' if is_image else '.npy' | |
| for idx, arr in enumerate(input_arrays): | |
| filename = '{}/{}-{}{}'.format(dir, title, idx, SUFFIX) | |
| if is_image: | |
| cv2.imwrite(filename, arr) | |
| else: | |
| np.save(filename, arr) | |
| filenames.append(filename) | |
| return filenames | |
| pred_size = (10, 30, 30) | |
| num_classes = 19 | |
| ignore_index = 255 | |
| results = np.random.randint(0, num_classes, size=pred_size) | |
| labels = np.random.randint(0, num_classes, size=pred_size) | |
| labels[:, 2, 5:10] = ignore_index | |
| with tempfile.TemporaryDirectory() as temp_dir: | |
| result_files = save_arr(results, 'pred', False, temp_dir) | |
| label_files = save_arr(labels, 'label', True, temp_dir) | |
| ret_metrics = eval_metrics( | |
| result_files, | |
| label_files, | |
| num_classes, | |
| ignore_index, | |
| metrics='mIoU') | |
| all_acc, acc, iou = ret_metrics['aAcc'], ret_metrics[ | |
| 'Acc'], ret_metrics['IoU'] | |
| all_acc_l, acc_l, iou_l = legacy_mean_iou(results, labels, num_classes, | |
| ignore_index) | |
| assert all_acc == all_acc_l | |
| assert np.allclose(acc, acc_l) | |
| assert np.allclose(iou, iou_l) | |