Add files using upload-large-folder tool

gdl_ct/128x128x64/gdl_0007.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    32,
+    205,
+    1042
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.7235,
+  "post_opening_porosity": 0.63713,
+  "closed_pore_voxels": 186,
+  "post_fill_porosity": 0.63696,
+  "porosity_post": 0.63696,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 186
+    },
+    "porosity": 0.63696,
+    "percolates_flow_axis": true,
+    "n_pores": 275,
+    "n_throats": 682,
+    "throat_inscribed_radius_vox": {
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+      "mean": 3.705,
+      "std": 1.644,
+      "min": 1.0,
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+      "p25": 2.828,
+      "median": 3.606,
+      "p75": 4.69,
+      "p90": 5.992,
+      "max": 11.0
+    },
+    "pore_inscribed_radius_vox": {
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+      "p90": 7.0,
+      "max": 12.329
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0007_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.62439
+x,64,0.5,0.5791
+x,95,0.75,0.66846
+y,32,0.25,0.68274
+y,64,0.5,0.71094
+y,95,0.75,0.61377
+z,16,0.25,0.67761
+z,32,0.5,0.71222
+z,47,0.75,0.6814

gdl_ct/128x128x64/gdl_0007_throat_dist.csv

@@ -0,0 +1,683 @@
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gdl_ct/128x128x64/gdl_0008.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    68,
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+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.71111,
+  "post_opening_porosity": 0.62408,
+  "closed_pore_voxels": 222,
+  "post_fill_porosity": 0.62387,
+  "porosity_post": 0.62387,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 222
+    },
+    "porosity": 0.62387,
+    "percolates_flow_axis": true,
+    "n_pores": 245,
+    "n_throats": 585,
+    "throat_inscribed_radius_vox": {
+      "n": 585,
+      "mean": 3.958,
+      "std": 1.643,
+      "min": 1.0,
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+      "p25": 3.0,
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+      "p90": 6.0,
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+    },
+    "pore_inscribed_radius_vox": {
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+      "p90": 7.348,
+      "max": 10.0
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0008_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
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+x,64,0.5,0.51282
+x,95,0.75,0.61353
+y,32,0.25,0.69067
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+y,95,0.75,0.64612
+z,16,0.25,0.69348
+z,32,0.5,0.68695
+z,47,0.75,0.5954

gdl_ct/128x128x64/gdl_0008_throat_dist.csv

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gdl_ct/128x128x64/gdl_0009.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    72,
+    613,
+    498
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.72206,
+  "post_opening_porosity": 0.62896,
+  "closed_pore_voxels": 0,
+  "post_fill_porosity": 0.62896,
+  "porosity_post": 0.62896,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 0
+    },
+    "porosity": 0.62896,
+    "percolates_flow_axis": true,
+    "n_pores": 266,
+    "n_throats": 608,
+    "throat_inscribed_radius_vox": {
+      "n": 608,
+      "mean": 3.972,
+      "std": 1.711,
+      "min": 1.0,
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+      "p25": 3.0,
+      "median": 4.0,
+      "p75": 5.099,
+      "p90": 6.164,
+      "max": 9.0
+    },
+    "pore_inscribed_radius_vox": {
+      "n": 266,
+      "mean": 4.577,
+      "std": 1.805,
+      "min": 1.414,
+      "p10": 2.449,
+      "p25": 3.162,
+      "median": 4.123,
+      "p75": 5.385,
+      "p90": 7.036,
+      "max": 12.247
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0009_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.61023
+x,64,0.5,0.63916
+x,95,0.75,0.65295
+y,32,0.25,0.50635
+y,64,0.5,0.64575
+y,95,0.75,0.66675
+z,16,0.25,0.66675
+z,32,0.5,0.64587
+z,47,0.75,0.67914

gdl_ct/128x128x64/gdl_0009_throat_dist.csv

@@ -0,0 +1,609 @@
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gdl_ct/128x128x64/gdl_0010.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    39,
+    255,
+    103
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.71649,
+  "post_opening_porosity": 0.61623,
+  "closed_pore_voxels": 0,
+  "post_fill_porosity": 0.61623,
+  "porosity_post": 0.61623,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 0
+    },
+    "porosity": 0.61623,
+    "percolates_flow_axis": true,
+    "n_pores": 287,
+    "n_throats": 649,
+    "throat_inscribed_radius_vox": {
+      "n": 649,
+      "mean": 3.697,
+      "std": 1.64,
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+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0010_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
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+z,47,0.75,0.66364

gdl_ct/128x128x64/gdl_0010_throat_dist.csv

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gdl_ct/128x128x64/gdl_0011.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    48,
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+    71
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.73169,
+  "post_opening_porosity": 0.6259,
+  "closed_pore_voxels": 562,
+  "post_fill_porosity": 0.62537,
+  "porosity_post": 0.62537,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 562
+    },
+    "porosity": 0.62537,
+    "percolates_flow_axis": true,
+    "n_pores": 286,
+    "n_throats": 635,
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+    },
+    "pore_inscribed_radius_vox": {
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+      "max": 10.488
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0011_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
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+x,64,0.5,0.5946
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+z,47,0.75,0.60529

gdl_ct/128x128x64/gdl_0011_throat_dist.csv

@@ -0,0 +1,636 @@
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gdl_ct/128x128x64/gdl_0012.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
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+    128,
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+  ],
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+    75,
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+    311
+  ],
+  "bob_transpose": [
+    1,
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+    0
+  ],
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+  "pre_opening_porosity": 0.66638,
+  "post_opening_porosity": 0.56306,
+  "closed_pore_voxels": 488,
+  "post_fill_porosity": 0.56259,
+  "porosity_post": 0.56259,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 488
+    },
+    "porosity": 0.56259,
+    "percolates_flow_axis": true,
+    "n_pores": 257,
+    "n_throats": 577,
+    "throat_inscribed_radius_vox": {
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+    "pore_inscribed_radius_vox": {
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+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0012_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.52246
+x,64,0.5,0.53601
+x,95,0.75,0.61926
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+z,16,0.25,0.64258
+z,32,0.5,0.67169
+z,47,0.75,0.30334

gdl_ct/128x128x64/gdl_0012_throat_dist.csv

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gdl_ct/128x128x64/gdl_0013.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    55,
+    185,
+    852
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.73362,
+  "post_opening_porosity": 0.64225,
+  "closed_pore_voxels": 285,
+  "post_fill_porosity": 0.64198,
+  "porosity_post": 0.64198,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 285
+    },
+    "porosity": 0.64198,
+    "percolates_flow_axis": true,
+    "n_pores": 255,
+    "n_throats": 615,
+    "throat_inscribed_radius_vox": {
+      "n": 615,
+      "mean": 3.705,
+      "std": 1.688,
+      "min": 1.0,
+      "p10": 1.414,
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+      "median": 3.742,
+      "p75": 4.636,
+      "p90": 5.916,
+      "max": 9.849
+    },
+    "pore_inscribed_radius_vox": {
+      "n": 255,
+      "mean": 4.655,
+      "std": 1.834,
+      "min": 2.0,
+      "p10": 2.449,
+      "p25": 3.162,
+      "median": 4.472,
+      "p75": 5.831,
+      "p90": 7.0,
+      "max": 11.533
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0013_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.62769
+x,64,0.5,0.67786
+x,95,0.75,0.61292
+y,32,0.25,0.65051
+y,64,0.5,0.59644
+y,95,0.75,0.67761
+z,16,0.25,0.68188
+z,32,0.5,0.69965
+z,47,0.75,0.62775

gdl_ct/128x128x64/gdl_0013_throat_dist.csv

@@ -0,0 +1,616 @@
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gdl_ct/128x128x64/gdl_0014.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    61,
+    398,
+    76
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.65262,
+  "post_opening_porosity": 0.5423,
+  "closed_pore_voxels": 1499,
+  "post_fill_porosity": 0.54087,
+  "porosity_post": 0.54087,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 1499
+    },
+    "porosity": 0.54087,
+    "percolates_flow_axis": true,
+    "n_pores": 285,
+    "n_throats": 557,
+    "throat_inscribed_radius_vox": {
+      "n": 557,
+      "mean": 3.613,
+      "std": 1.525,
+      "min": 1.0,
+      "p10": 1.414,
+      "p25": 2.828,
+      "median": 3.606,
+      "p75": 4.472,
+      "p90": 5.549,
+      "max": 9.0
+    },
+    "pore_inscribed_radius_vox": {
+      "n": 285,
+      "mean": 4.22,
+      "std": 1.696,
+      "min": 1.0,
+      "p10": 2.236,
+      "p25": 3.0,
+      "median": 4.0,
+      "p75": 5.099,
+      "p90": 6.372,
+      "max": 12.083
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0014_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.4729
+x,64,0.5,0.60864
+x,95,0.75,0.578
+y,32,0.25,0.61426
+y,64,0.5,0.47754
+y,95,0.75,0.47925
+z,16,0.25,0.56122
+z,32,0.5,0.64539
+z,47,0.75,0.5119

gdl_ct/128x128x64/gdl_0014_throat_dist.csv

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gdl_ct/128x128x64/gdl_0015.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
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+    128,
+    128
+  ],
+  "origin_zyx": [
+    85,
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+    1004
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.70009,
+  "post_opening_porosity": 0.60922,
+  "closed_pore_voxels": 202,
+  "post_fill_porosity": 0.60902,
+  "porosity_post": 0.60902,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 202
+    },
+    "porosity": 0.60902,
+    "percolates_flow_axis": true,
+    "n_pores": 255,
+    "n_throats": 582,
+    "throat_inscribed_radius_vox": {
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+      "p75": 5.0,
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+    },
+    "pore_inscribed_radius_vox": {
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+      "max": 12.728
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

gdl_ct/128x128x64/gdl_0015_slices.csv

@@ -0,0 +1,10 @@
+slice_axis,slice_index,depth_fraction,slice_porosity
+x,32,0.25,0.68628
+x,64,0.5,0.62085
+x,95,0.75,0.53906
+y,32,0.25,0.61572
+y,64,0.5,0.68677
+y,95,0.75,0.60889
+z,16,0.25,0.6463
+z,32,0.5,0.67816
+z,47,0.75,0.48511

gdl_ct/128x128x64/gdl_0015_throat_dist.csv

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gdl_ct/128x128x64/gdl_0016.json

@@ -0,0 +1,66 @@
+{
+  "source": "data/DRP-462_crop/5DrySeg_crop_solid.npy",
+  "voxel_size_um": 2.05,
+  "shape": [
+    128,
+    128,
+    64
+  ],
+  "crop_shape_zyx": [
+    64,
+    128,
+    128
+  ],
+  "origin_zyx": [
+    59,
+    875,
+    854
+  ],
+  "bob_transpose": [
+    1,
+    2,
+    0
+  ],
+  "orientation": "slab (z, y, x) crop transposed (1, 2, 0) to bob porous3d default: flow axis x = last axis = GDL through-plane; x = 0 is slab z = origin",
+  "pre_opening_porosity": 0.66401,
+  "post_opening_porosity": 0.55913,
+  "closed_pore_voxels": 636,
+  "post_fill_porosity": 0.55852,
+  "porosity_post": 0.55852,
+  "stats": {
+    "post_processing": {
+      "description": "ball(3) morphological opening of the pore space (closes throats with inscribed-sphere radius < 3 vox) + fill of face-disconnected dead pore pockets",
+      "opening_radius_vox": 3,
+      "closed_pore_voxels": 636
+    },
+    "porosity": 0.55852,
+    "percolates_flow_axis": true,
+    "n_pores": 269,
+    "n_throats": 547,
+    "throat_inscribed_radius_vox": {
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+      "mean": 3.753,
+      "std": 1.604,
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+      "max": 9.0
+    },
+    "pore_inscribed_radius_vox": {
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+      "max": 10.488
+    },
+    "network_extraction": "porespy.networks.snow2 (boundary_width=0, voxel_size=1) on the post-processed geometry"
+  }
+}

poly/128/poly128_0000.npy

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