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README.md
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data_files:
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- split: train
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path: raw/train-*
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---
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data_files:
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- split: train
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path: raw/train-*
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license: cc-by-4.0
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---
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# Pheno4D Point Cloud Segmentation
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A dataset for point cloud semantic segmentation of maize and tomato plants. The dataset contains 126 labeled 3D scans across two species, tomato (single label scheme) and maize (dual label scheme: collar-based and tip-based organ boundaries), with per-point labels identifying plant organs (e.g. stem, leaf).
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Each sample includes:
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- `points`: an (N, 3) array of x, y, z point coordinates, N varies per scan
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- `mask`: an (N, 1) array of per-point organ labels (primary label scheme)
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- `mask_2`: an (N, 1) array of per-point organ labels (secondary label scheme, maize only; -1 where not applicable)
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This dataset is indexed on https://project-agml.github.io/ as part of the AgML python library.
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**Note:** this is AgML's first point cloud dataset. Naming follows the `mask` convention used for 2D semantic segmentation datasets in this organization, adapted for 3D point data (stored as `Array2D` with a dynamic first dimension rather than image masks).
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## Citation
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```bibtex
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@article{schunck2021pheno4d,
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title={Pheno4D: A spatio-temporal dataset of maize and tomato plant point clouds for phenotyping and advanced plant analysis},
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author={Schunck, David and Magistri, Federico and Rosu, Radu Alexandru and Corneli{\ss}en, Anne and Chebrolu, Nived and Paulus, Stefan and L{\'e}on, Jens and Behnke, Sven and Stachniss, Cyrill and Kuhlmann, Heiner and Klingbeil, Lasse},
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journal={PLOS ONE},
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volume={16},
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number={8},
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pages={1--18},
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year={2021},
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publisher={Public Library of Science},
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doi={10.1371/journal.pone.0256340}
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}
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```
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Original dataset: https://www.ipb.uni-bonn.de/data/pheno4d/
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*This dataset was reformatted to match HuggingFace standards as part of AgML's point cloud dataset support.*
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