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| """Internal mathematical consistency; no experimental-performance validation.""" | |
| from pathlib import Path | |
| import csv,json,math,itertools | |
| OUT=Path(__file__).resolve().parent | |
| layers=[('L0',60,'H-S contact film'),('L1',100,'Shared load spreading and travel-stop allocation'),('L2',300,'Matched A/R sensing elements; optional isolated trace wells'), | |
| ('L3',80,'Isolation septum'),('L4',240,'W0/WG-C coupling, stable reference, archive and identity'),('L5',100,'Material terminals'), | |
| ('L6',620,'Recoil dermis'),('L7',100,'Attachment')] | |
| params={'release':'3.0','status':'final standalone technology-aligned material blueprint; integrated performance untested','title':'Ørïelith//9 - The Skin of an Impossible Angel', | |
| 'patch_mm':[20,20,1.6],'active_field_mm':[16,16],'taxels':[16,16], | |
| 'pitch_um':1000,'island_um':[700,700],'centers_mm':'x=2.5+i, y=2.5+j; i,j=0..15', | |
| 'cavity_um':{'diameter':500,'depth':100,'diaphragm':20}, | |
| 'ionic_transport_lengths_um':[5,15,50],'illustrative_D_m2_per_s':1e-11, | |
| 'witness_ligament_um':[100,10,5],'ligaments_per_taxel':4,'witness_active_length_um':20, | |
| 'tag':{'carrier_um':[220,140,30],'grid':[16,8],'pitch_um':10,'site_diameter_um':6, | |
| 'code':'RM(1,7)','number_of_codewords':256,'length':128,'minimum_distance':64, | |
| 'id':'16*j+i','a':'seven low ID bits','b':'highest ID bit','site':'x=16*row+column'}, | |
| 'material_terminal_channel_um':[40,30],'terminal_min_septum_um':10, | |
| 'qualification_temperature_C':[20,40], | |
| 'ambient_repair_screen':{'temperature_C':20,'relative_humidity_percent':40,'duration_h':24,'requires':'clean host faces recontacted; all assembled outcomes measured separately'}, | |
| 'tolerances_targets':{'layer_fraction':0.10,'registration_um':25,'tag_site_placement_um':2}, | |
| 'gates_are_targets_not_results':True, | |
| 'unresolved':['ionic barrier qualification','W0/WG and C-SH cure/deprotection and interphase qualification', | |
| 'skin-scale writer activation window','elastically active WG-C capture and retained force recruitment', | |
| 'stable calibrated reference and matched translation','loaded travel-stop validation','permanent tag chemistry', | |
| 'full terminal routing mask','assembled functional healing'], | |
| 'writable_tether':{'topology':'active sensor ki in series with g_A; parallel stable reference K_R and shared host bypass B', | |
| 'ledger':'reduced g=g0-a_loss*m+b_gain*r; 0<=r<=min(m,theta); add -L_B for separately activated inaccessible bulk', | |
| 'inventory_reference':'measured force-bearing interface-eligible writer population N_I; not all bulk feed', | |
| 'settled_requirement':'b_gain*chi>a_loss AND fractional Ks growth exceeds fractional Kb growth', | |
| 'nano_reaction_reach_target_nm':5,'receiver_coat_um':2,'reactive_cassette_to_exposed_host_um':5, | |
| 'support_W0_um':4.9,'writer_WG_nominal_nm':100,'writer_WG_tolerance_nm':20, | |
| 'WG_screened_DA_mmol_per_10mmol_HMA':[0.05,0.1,0.25], | |
| 'reference_KR_N_m':20,'travel_stop_measured_upper_target_um':50, | |
| 'fine_post_footprint_um':[100,100], | |
| 'active_post_centers_um':[[100,100],[-100,-100]], | |
| 'reference_post_centers_um':[[100,-100],[-100,100]], | |
| 'example_N_per_m':{'ki':100,'g0':25,'g1':200,'Kb':80,'a_loss':10,'b_gain':185}}} | |
| cum=0 | |
| for code,t,role in layers: | |
| params.setdefault('layers',[]).append({'layer':code,'z0_um':cum,'z1_um':cum+t,'thickness_um':t,'role':role});cum+=t | |
| assert cum==1600 | |
| with (OUT/'design_parameters.json').open('w') as f:json.dump(params,f,indent=2,ensure_ascii=False) | |
| with (OUT/'layer_stack.csv').open('w',newline='') as f: | |
| wr=csv.DictWriter(f,fieldnames=['layer','z0_um','z1_um','thickness_um','role']);wr.writeheader();wr.writerows(params['layers']) | |
| recipes=[ | |
| ['H-S','Aminopropyl-terminated PDMS; nominal Mn5000','2.400',5000,12,'4.800 NH2','use measured amine equivalent weight'], | |
| ['H-S','4,4-methylenebis(cyclohexyl isocyanate) MCI/H12MDI','1.680',262.35,0.440748,'3.360 NCO','ACTIVE mass; divide by actual assay for reagent mass'], | |
| ['H-S','1,3,5-Triformylbenzene TFB','0.480',162.14,0.0778272,'1.440 CHO','ACTIVE mass; divide by actual assay; imine water removed'], | |
| ['I-30','Purified CLPU@E5','not specified','',7,'','prequalified polymer; not a generic chlorinated resin'], | |
| ['I-30','EMIM-TFSI','not specified','',3,'','30 wt% of total dry blend'], | |
| ['W0','n-Hexyl methacrylate','10.000',170.25,1.7025,'10 vinyl','writer-free permanent support'], | |
| ['W0','Ethylene glycol dimethacrylate','0.100',198.22,0.019822,'0.200 vinyl','support must remain percolating'], | |
| ['W0','Dibenzoyl peroxide active compound','0.020',242.23,0.0048446,'','initiator screening input; no cure schedule asserted'], | |
| ['WG high-feed screen','n-Hexyl methacrylate','10.000',170.25,1.7025,'10 vinyl','untested 100nm gate-coat candidate'], | |
| ['WG high-feed screen','Ethylene glycol dimethacrylate','0.100',198.22,0.019822,'0.200 vinyl','coat anchoring and retention require qualification'], | |
| ['WG high-feed screen','Published compound 8 DOI10.1039/C5SC03297K','0.250','verify','derive from verified MW','0.500 vinyl','also screen0.050 and0.100mmol; higher feed is not necessarily better'], | |
| ['WG high-feed screen','Dibenzoyl peroxide active compound','0.020',242.23,0.0048446,'','initiator screening input; no cure schedule asserted'], | |
| ['C-SH protected','n-Hexyl methacrylate','9.500',170.25,1.617375,'9.500 vinyl','untested receiver feed'], | |
| ['C-SH protected','2-(Acetylthio)ethyl methacrylate AcSEMA','0.500',188.24,0.09412,'0.500 vinyl; 0.500 protected SH','C8H12O3S; separate deprotection and assay required'], | |
| ['C-SH protected','Ethylene glycol dimethacrylate','0.100',198.22,0.019822,'0.200 vinyl','permanent receiver network'], | |
| ['C-SH protected','Dibenzoyl peroxide active compound','0.020',242.23,0.0048446,'','initiator screening input'], | |
| ] | |
| with (OUT/'chemical_formulations.csv').open('w',newline='') as f: | |
| wr=csv.writer(f);wr.writerow(['formulation','ingredient','amount_mmol','MW_g_mol','mass_g','group_amount_mmol','qualification']);wr.writerows(recipes) | |
| words=[] | |
| for ident in range(256): | |
| a=ident&127;b=ident>>7 | |
| w=sum((((a&x).bit_count()%2)^b)<<x for x in range(128)) | |
| words.append(w) | |
| mind=min((a^b).bit_count() for a,b in itertools.combinations(words,2)) | |
| assert len(set(words))==256 and mind==64 | |
| times={str(L):((L*1e-6)**2/(math.pi**2*1e-11)) for L in (5,15,50)} | |
| Hstar=.8;Mstar=.9;t=86400 | |
| ratio=-math.log1p(-Hstar)/(-math.log(Mstar)) | |
| kH=-math.log1p(-Hstar)/t;kM=-math.log(Mstar)/t | |
| hs_mass=sum(float(r[4]) for r in recipes if r[0]=='H-S') | |
| assert math.isclose(hs_mass,12.5185752,abs_tol=1e-8) | |
| report={ | |
| 'purpose':'mathematical and dimensional consistency only; no experimental data', | |
| 'layer_sum_um':cum,'taxel_count':256,'last_center_mm':17.5,'active_field_limits_mm':[2,18], | |
| 'HS_NH2_mmol':4.8,'HS_NCO_mmol':3.36,'HS_CHO_mmol':1.44,'HS_group_balance_difference_mmol':4.8-3.36-1.44, | |
| 'HS_active_feed_g':hs_mass,'MCI_reagent_g_at_exact_90percent_assay':.440748/.9, | |
| 'TFB_reagent_g_at_exact_98percent_assay':.0778272/.98,'HS_formal_imine_water_g':.00144*18.015, | |
| 'ionic_liquid_weight_fraction':3/(7+3),'ionic_diffusion_tau_s_at_D1e-11':times, | |
| 'Dlat_max_m2_s_for_10um_blur_25s':(10e-6)**2/(2*25), | |
| 'Dlat_max_m2_s_for_10um_blur_24h':(10e-6)**2/(2*86400), | |
| 'healing_archive_selectivity_ratio_min':ratio, | |
| 'kH_min_for_80percent_in_24h_s-1':kH,'kM_max_for_90percent_in_24h_s-1':kM, | |
| 'kM_max_for_90percent_24h_s-1':-math.log(.9)/86400, | |
| 'archive_decay_time_days_for_90percent_24h':(-math.log(.9)/86400)**-1/86400, | |
| 'RM_codewords':256,'RM_pairwise_comparisons':256*255//2,'RM_dmin':mind,'RM_max_correctable_arbitrary_errors':31, | |
| 'witness_fraction_excluding_anchors':4*100*10*5/(700*700*240), | |
| 'hypothetical_ligament_stress_gain_per_load_fraction':math.pi*250**2/(4*10*5), | |
| 'hypothetical_ligament_stress_MPa_at_200kPa_1percent_axial_loadshare':200000*.01*math.pi*250**2/(4*10*5)/1e6, | |
| 'nominal_cavity_loads_mN':{str(p):p*1000*math.pi*(250e-6)**2*1000 for p in (20,80,200)}, | |
| 'tile_envelope_volume_cm3':.64,'tile_mass_g_if_all_density1p1':.64*1.1, | |
| 'nominal_200kPa_load_N_tile':200000*.02*.02,'nominal_200kPa_load_N_active':200000*.016*.016, | |
| 'thermal_diffusion_s_at_alpha1e-7':{'0.5mm':(.0005**2)/1e-7,'1.6mm':(.0016**2)/1e-7}, | |
| 'all_checks_passed':True} | |
| def mechanics(g,ki=100.0,kb=80.0,force=20000*math.pi*(250e-6)**2): | |
| ks=ki*g/(ki+g);total=ks+kb;phi=ks/total | |
| return {'g_N_m':g,'Ks_N_m':ks,'Ktotal_N_m':total,'phi':phi, | |
| 'overall_indentation_um':force/total*1e6,'receptor_force_mN':phi*force*1000, | |
| 'receptor_extension_um':phi*force/ki*1e6, | |
| 'pressure_for_1mN_kPa':.001/(math.pi*(250e-6)**2*phi)/1000} | |
| initial=mechanics(25);written=mechanics(200) | |
| assert math.isclose(written['phi']/initial['phi'],25/11,rel_tol=1e-12) | |
| assert written['Ktotal_N_m']>initial['Ktotal_N_m'] and written['overall_indentation_um']<initial['overall_indentation_um'] | |
| assert mechanics(200,kb=400)['phi']<initial['phi'] | |
| assert mechanics(25-10+185*.04)['phi']<initial['phi'] | |
| area=math.pi*(250e-6)**2 | |
| phimax=100/(100+80) | |
| report['force_recruitment']={'initial':initial,'written':written,'local_gain_ratio':written['phi']/initial['phi'], | |
| 'relative_total_stiffness_increase':written['Ktotal_N_m']/initial['Ktotal_N_m']-1, | |
| 'phi_ceiling':phimax,'gain_ceiling':phimax/initial['phi'], | |
| 'minimum_1mN_threshold_kPa':.001/(area*phimax)/1000, | |
| 'counterexample_bypass400_N_m':mechanics(200,kb=400), | |
| 'counterexample_capture_yield_0p04':mechanics(25-10+185*.04)} | |
| # Check the nonlinear implicit derivative against independently solved equilibria. | |
| def equilibrium(load,z,beta): | |
| def ext(q):return q+.1*q**3+q/(1+z)+.05*(q/(1+z))**3 | |
| lo=0.;hi=load | |
| for _ in range(80): | |
| q=(lo+hi)/2;u=ext(q) | |
| if q+(1+beta*z)*(u+.2*u**3)>load:hi=q | |
| else:lo=q | |
| return (lo+hi)/2 | |
| max_error=0.;nchecks=0 | |
| for load in (.1,.5,1.,2.,4.): | |
| for z in (.1,.3,.8,1.4,2.): | |
| for beta in (0.,.3,1.,3.): | |
| q=equilibrium(load,z,beta) | |
| u=q+.1*q**3+q/(1+z)+.05*(q/(1+z))**3 | |
| bd=(1+beta*z)*(1+.6*u*u);bz=beta*(u+.2*u**3) | |
| uip=1+.3*q*q;ugf=1/(1+z)+.15*q*q/(1+z)**3 | |
| ugz=-q/(1+z)**2-.15*q**3/(1+z)**4 | |
| exact=-(bd*ugz+bz)/(1+bd*(uip+ugf)) | |
| eps=1e-5 | |
| numerical=(equilibrium(load,z+eps,beta)-equilibrium(load,z-eps,beta))/(2*eps) | |
| max_error=max(max_error,abs(exact-numerical));nchecks+=1 | |
| assert max_error<1e-8 | |
| report['nonlinear_implicit_derivative_check']={'dimensionless_test_equilibria':nchecks,'max_abs_error':max_error, | |
| 'scope':'independent equilibrium-root finite difference against analytic derivative; not an experimental constitutive model'} | |
| # Explicit finite-capacity illustrative trajectory. Every output is model-only. | |
| force=20000*area;delta_g0=initial['phi']*force/25 | |
| def rhs(state): | |
| m,r=state;g=25-10*m+185*r | |
| mech=mechanics(g,force=force);dg=mech['phi']*force/g | |
| kw=.03*math.exp(4*dg/delta_g0) | |
| return kw*(1-m),5*(m-r)*(1-r) | |
| def rk4(state,dt): | |
| k1=rhs(state);k2=rhs(tuple(state[j]+dt*k1[j]/2 for j in (0,1))) | |
| k3=rhs(tuple(state[j]+dt*k2[j]/2 for j in (0,1))) | |
| k4=rhs(tuple(state[j]+dt*k3[j] for j in (0,1))) | |
| return tuple(state[j]+dt*(k1[j]+2*k2[j]+2*k3[j]+k4[j])/6 for j in (0,1)) | |
| state=(0.,0.);dt=.01;trajectory=[];min_g=25. | |
| for step in range(6001): | |
| m,r=state;g=25-10*m+185*r;min_g=min(min_g,g) | |
| assert -1e-9<=r<=m+1e-9 and m<=1+1e-9 and r<=1+1e-9 | |
| if step%50==0: | |
| me=mechanics(g,force=force) | |
| trajectory.append([step*dt,m,r,g,me['phi'],me['Ktotal_N_m']]) | |
| state=rk4(state,dt) | |
| with (OUT/'illustrative_capture_trajectory.csv').open('w',newline='') as f: | |
| w=csv.writer(f);w.writerow(['model_time_s','opened_fraction_m','captured_fraction_r','g_N_m','receptor_force_fraction','Ktotal_N_m']);w.writerows(trajectory) | |
| assert min_g<25 and min_g>15 | |
| report['illustrative_kinetics']={'kw_law':'0.03*exp(4*delta_g/delta_g_initial) s^-1', | |
| 'kc_normalized':5,'theta':1,'integration':'RK4 dt=0.01s; 60s, no fitted data', | |
| 'inventory_reference':'interface-eligible N_I; reduced model assumes no inaccessible bulk activation (L_B=0)', | |
| 'min_g_N_m':min_g,'last_record':trajectory[-1], | |
| 'warning':'initial softening is present; finite capacity does not guarantee fracture protection'} | |
| report['receiver_protected_feed_g']=sum(float(r[4]) for r in recipes if r[0]=='C-SH protected') | |
| report['formal_receiver_deacetylation_mass_loss_g']=.0005*42.037 | |
| assert math.isclose(report['receiver_protected_feed_g'],1.7361616,abs_tol=1e-10) | |
| cD=1000/.17025*.005;gamma=cD*5e-9 | |
| report['upper_bound_accessible_writer_inventory']={'assumed_density_kg_m3':1000,'assumed_writer_repeat_fraction':.005, | |
| 'assumed_accessible_depth_nm':5,'cD_mol_m3':cD,'gamma_mol_m2':gamma, | |
| 'sites_per_1000_um2':gamma*1e-9*6.02214076e23,'fraction_of_uniform_5um_film_one_face':5e-9/5e-6, | |
| 'scope':'uniform bulk CONTROL; not the final gate-coat design or measured active-link density'} | |
| report['illustrative_kinetics']['configuration']='reference-free control only; final referenced module is verified below' | |
| def paired(g, kb=80., load=20000*area, kr=20., ki=100.): | |
| ka=ki*g/(ki+g);total=ka+kr+kb;delta=load/total | |
| fa=ka*delta;fr=kr*delta | |
| return {'KA_N_m':ka,'KR_N_m':kr,'Ktotal_N_m':total,'delta_um':delta*1e6, | |
| 'FA_mN':fa*1000,'FR_mN':fr*1000,'Q':fa/fr, | |
| 'xg_um':fa/g*1e6,'xi_um':fa/ki*1e6, | |
| 'P_for_active_1mN_kPa':.001/(area*ka/total)/1000} | |
| pa=paired(25);pb=paired(200) | |
| assert math.isclose(pb['FA_mN']/pa['FA_mN'],2.4,rel_tol=1e-12) | |
| assert math.isclose(pb['Q']/pa['Q'],10/3,rel_tol=1e-12) | |
| qerr=max(abs(paired(g,kb)['Q']-paired(g,80)['Q']) for g in (25,50,100,150,200) for kb in (0,10,80,200,1000)) | |
| assert qerr<1e-12 | |
| g_from_ratio={str(rho):100*rho*20/(100-rho*20)for rho in (1,2,3)} | |
| assert all(math.isclose(paired(g)['Q'],float(rho),rel_tol=1e-12)for rho,g in g_from_ratio.items()) | |
| report['final_referenced_module']={'initial':pa,'written':pb,'actual_FA_gain':pb['FA_mN']/pa['FA_mN'], | |
| 'reference_ratio_gain':pb['Q']/pa['Q'],'host_bypass_invariance_max_abs_error':qerr, | |
| 'tested_Kb_N_m':[0,10,80,200,1000],'g_programmed_from_Q_N_m':g_from_ratio, | |
| 'Q_architectural_ceiling':5,'cannot_infer':'absolute pressure without total-force/bypass calibration'} | |
| # Nonlinear reconstruction: independently solve branches and total equilibrium. | |
| def invert_monotone(fn,value,hi0=1.): | |
| lo=0.;hi=hi0 | |
| while fn(hi)<value:hi*=2 | |
| for _ in range(85): | |
| mid=(lo+hi)/2 | |
| if fn(mid)>value:hi=mid | |
| else:lo=mid | |
| return (lo+hi)/2 | |
| ui=lambda q:q/2+.03*q**3 | |
| ug=lambda q,z:q/(1+z)+.02*(q/(1+z))**3 | |
| ref=lambda d:1.3*d+.1*d**3 | |
| records=[];max_recon=0. | |
| for z in (0.,.5,1.,2.): | |
| for kb in (.2,1.,3.): | |
| for load in (.1,.3,.6,1.,1.5,2.): | |
| aforce=lambda d:invert_monotone(lambda q:ui(q)+ug(q,z),d) | |
| delta=invert_monotone(lambda d:aforce(d)+ref(d)+kb*d+.15*d**3,load) | |
| fa=aforce(delta);fr=ref(delta) | |
| x_recon=invert_monotone(ref,fr)-ui(fa);x_true=ug(fa,z) | |
| max_recon=max(max_recon,abs(x_recon-x_true)) | |
| records.append([z,kb,load,fa,fr,delta,x_recon,x_true]) | |
| assert max_recon<1e-11 | |
| with (OUT/'nonlinear_reference_reconstruction.csv').open('w',newline='')as f: | |
| w=csv.writer(f);w.writerow(['model_state_z','model_host_kb','model_total_force','active_force','reference_force','true_translation','reconstructed_tether_extension','true_tether_extension']);w.writerows(records) | |
| report['nonlinear_reference_reconstruction']={'model_equilibria':len(records),'max_absolute_extension_error':max_recon, | |
| 'scope':'dimensionless monotone nonlinear constitutive models; no measured material properties'} | |
| # Antipodal footprint and affine-tilt test (all contacts engaged). | |
| posts={'A':[(100,100),(-100,-100)],'R':[(100,-100),(-100,100)]} | |
| assert all(math.hypot(x+dx,y+dy)<250 for pts in posts.values()for x,y in pts for dx in (-50,50)for dy in (-50,50)) | |
| delta0=30.;v=(.03,-.04) | |
| sumA=sum(10*(delta0+v[0]*x+v[1]*y)for x,y in posts['A']) | |
| sumR=sum(10*(delta0+v[0]*x+v[1]*y)for x,y in posts['R']) | |
| assert math.isclose(sumA/sumR,1.) | |
| report['antipodal_geometry']={'footprints_inside_radius250um':True,'matched_affine_tilt_ratio':sumA/sumR, | |
| 'scope':'linear matched positive-contact model; no plate-bending validation'} | |
| # Loaded-travel requirement, not a promise from a nominal gap. | |
| travel=50e-6;ka_max=pb['KA_N_m'];kr=20;kb=80 | |
| report['conditional_loaded_travel_limit']={'required_measured_delta_max_um':50, | |
| 'FA_max_mN':ka_max*travel*1000,'FR_max_mN':kr*travel*1000, | |
| 'each_active_post_force_cap_mN':ka_max*travel*1000/2, | |
| 'active_sensor_extension_um':ka_max*travel/100*1e6, | |
| 'generic_g_infinite_FA_bound_mN':100*travel*1000, | |
| 'ideal_stop_onset_kPa_initial':travel*(pa['KA_N_m']+kr+kb)/area/1000, | |
| 'ideal_stop_onset_kPa_written':travel*(pb['KA_N_m']+kr+kb)/area/1000, | |
| 'ideal_stop_force_at200kPa_mN_initial':(200000*area-travel*(pa['KA_N_m']+kr+kb))*1000, | |
| 'ideal_stop_force_at200kPa_mN_written':(200000*area-travel*(pb['KA_N_m']+kr+kb))*1000, | |
| 'scope':'conditional idealized upper-travel contract; finite stop compliance, impact and survival require tests'} | |
| assert pa['delta_um']<50 and pb['delta_um']<50 | |
| errx=5e-6/20+5e-6/100 | |
| report['example_force_error_budget']={'assumed_each_force_error_uN':5,'extension_error_bound_um':errx*1e6, | |
| 'written_xg_um_at20kPa':pb['xg_um'],'scope':'assumed readout error; calibration and mismatch errors excluded'} | |
| gamma_new=1000/.17025*.025*5e-9 | |
| report['surface_writer_geometry_budget']={'WG_nominal_thickness_nm':100,'WG_thickness_tolerance_nm':20, | |
| 'W0_support_um':4.9,'assumed_accessible_depth_nm':5,'accessible_fraction':.05, | |
| 'geometric_utilization_ratio_vs5um_control':50,'gamma_upper_mol_m2':gamma_new, | |
| 'areal_inventory_ratio_vs_control':gamma_new/gamma, | |
| 'total_writer_per_area_ratio_vs_control':(1000/.17025*.025*100e-9)/(cD*5e-6), | |
| 'scope':'approximate HMA-repeat inventory geometry; not sensitivity, activation or yield'} | |
| (OUT/'calculation_report.json').write_text(json.dumps(report,indent=2)) | |
| print(json.dumps({'all_checks_passed':True,'host_feed_g':hs_mass,'final_referenced_module':report['final_referenced_module'], | |
| 'nonlinear_reconstruction':report['nonlinear_reference_reconstruction'], | |
| 'stop':report['conditional_loaded_travel_limit'],'surface_writer':report['surface_writer_geometry_budget']},indent=2)) | |